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  1. "Hierarchical and Symmetric Infant Image Registration by Robust Longitudinal-Example-Guided Correspondence Detection”, Medical Physics, 2015. [Yao Wu, Guorong Wu, Li Wang, Brent C. Munsell, Qian Wang, Weili Lin, Qianjin Feng, Wufan Chen, Dinggang Shen]
  2. "Sparse Temporally Dynamic Resting-State Functional Connectivity Networks for Early MCI Identification", Brain Imaging and Behavior, 2015. [Chong-Yaw Wee, Sen Yang, Pew-Thian Yap, Dinggang Shen]
  3. "LRTV: MR Image Super-Resolution with Low-Rank and Total Variation Regularizations”, IEEE Trans. On Medical Imaging, 2015. [Feng Shi, Jian Cheng, Li Wang, Pew-Thian Yap, Dinggang Shen]
  4. "Automatic Segmentation of Spinal Canals in CT Images via Iterative Topology Refinement”, IEEE Trans. On Medical Imaging, 2015. [Qian Wang, Le Lu, Dijia Wu, Noha El-Zehiry, Yefeng Zheng, Dinggang Shen, Kevin S. Zhou]
  5. "Spatial Patterns, Longitudinal Development, and Hemispheric Asymmetries of Cortical Thickness in Infants from Birth to 2 Years of Age”, Journal of Neuroscience, 2015. [Gang Li, Weili Lin, John H. Gilmore, Dinggang Shen]
  6. "Deep Sparse Multi-Task Learning for Feature Selection in Alzheimer’s Disease Diagnosis”, Brain Structure and Function, 2015. [Heung-Il Suk, Seong-Whan Lee, Dinggang Shen]
  7. “A Robust Deep Model for Improved Classification of AD/MCI Patients”, IEEE Journal of Biomedical and Health Informatics, 2015. [Feng Li, Loc Tran, Kim-Han Thung, Shuiwang J, Dinggang Shen*, and Jiang Li*] * Co-corresponding authors.
  8. "MRI-based prostate volume-adjusted Prostate-Specific Antigen in the diagnosis of prostate cancer”, Journal of Magnetic Resonance Imaging, 2015. [Yahui Peng, Dinggang Shen, Shu Liao, Baris Turkbey, Soroush Rais-Bahrami, Bradford Wood, Ibrahim Karademir, Tatjana Antic, Ambereen Yousef, Yulei Jiang, Peter A. Pinto, Peter L. Choyke, Aytekin Oto]
  9. "Construction of 4D High-definition Cortical Surface Atlases of Infants: Methods and Applications”, Medical Image Analysis, 2015. [Gang Li, Li Wang, Feng Shi, John H. Gilmore, Weili Lin, Dinggang Shen]
  10. "Semi-Automatic Segmentation of Prostate in CT Images via Coupled Feature Representation and Spatial-Constrained Transductive Lasso”, IEEE Transactions on PAMI, 2015. [Yinghuan Shi, Yaozong Gao, Shu Liao, Daoqiang Zhang, Yang Gao, Dinggang Shen]
  11. "Online Updating of Context-aware Landmark Detectors for Prostate Localization in Daily Treatment CT Images”, Medical Physics 42(5):2594-2606, 2015. [Xiubin Dai, Yaozong Gao, Dinggang Shen]
  12. "Surface vulnerability of cerebral cortex to major depressive disorder”, PLOS ONE, 2015. [Daihui Peng*, Feng Shi, Gang Li, Drew Fralick, Ting Shen, Meihui Qiu, Jun Liu, Kaida Jiang, Dinggang Shen*, Yiru Fang] * Co-corresponding authors.
  13. "Domain Transfer Learning for MCI Conversion Prediction”, IEEE Trans. on Biomedical Engineering, 2015. [Bo Cheng, Mingxia Liu, Daoqiang Zhang, Brent C. Munsell, Dinggang Shen]
  14. "Multi-Task Feature Selection via Supervised Canonical Graph Matching for Diagnosis of Autism Spectrum Disorder”, Brain Imaging and Behavior, 2015. [Liye Wang, Chong-Yaw Wee, Xiaoying Tang, Pew-Thian Yap, Dinggang Shen]
  15. "Multimodal Manifold-Regularized Transfer Learning for MCI Conversion Prediction”, Brain Imaging and Behavior, 2015. [Bo Cheng, Mingxia Liu, Heung-Il Suk, Dinggang Shen*, Daoqiang Zhang*]  *Co-corresponding authors.
  16. "A Learning-Based Prostate Segmentation Method via Joint Transductive Feature Selection and Regression”, Neurocomputing, 2015. [Yinghuan Shi, Yaozong Gao, Shu Liao, Daoqiang Zhang, Yang Gao, Dinggang Shen]
  17. "MRI-based Intelligence Quotient (IQ) Estimation with Sparse Learning”, PLOS ONE, 2015. [Liye Wang, Chong-Yaw Wee, Heung-Il Suk, Xiaoying Tang, Dinggang Shen]
  18. "Probabilistic Air Segmentation and Sparse Regression Estimated Pseudo CT for PET/MR Attenuation Correction”, Radiology 275(2):562-569, 2015. [Yasheng Chen, Meher Juttukonda, Yi Su, Tammie Benzinger, Brian G. Rubin, Yueh Z. Lee, Weili Lin, Dinggang Shen, David Lalush, Hongyu An]
  19. "Deep Convolutional Neural Networks for Multi-Modality Isointense Infant Brain Image Segmentation”, Neuroimage 108:214-224, 2015. [Wenlu Zhang, Rongjian Li, Houtao Deng, Li Wang, Weili Lin, Shuiwang Ji, Dinggang Shen]
  20. "An Efficient Radius-incorporated MKL Algorithm for Alzheimer’s Disease Prediction", Pattern Recognition 48(7): 2141-2150, 2015. [Xinwang Liu, Luping Zhou, Lei Wang, Jian Zhang, Jianping Yin, Dinggang Shen]
  21. "LINKS: Learning-based multi-source IntegratioN frameworK for Segmentation of infant brain images”, Neuroimage 108:160-172, 2015. [Li Wang, Yaozong Gao, Feng Shi, Gang Li, John H. Gilmore, Weili Lin, Dinggang Shen]
  22. "Hierarchical Multi-atlas Label Fusion with Multi-scale Feature Representation and Label-specific Patch Partition”, Neuroimage 106:34-46, 2015. [Guorong Wu, Minjeong Kim, Gerard Sanroma, Qian Wang, Brent Munsell, Dinggang Shen]
  23. "Predict Brain MR Image Registration via Sparse Learning of Appearance and Transformation”, Medical Image Analysis 20(1):61-75, 2015. [Qian Wang, Minjeong Kim, Yonghong Shi, Guorong Wu, Dinggang Shen]
  24. "Cortical Thickness and Surface Area in Neonates at High Risk for Schizophrenia”, Brain Structure and Function, 2014. [Gang Li, Li Wang, Feng Shi, Amanda E. Lyall, Mihye Ahn, Ziwen Peng, Hongtu Zhu, Weili Lin, John H. Gilmore, Dinggang Shen]
  25. "Improved Image Registration by Sparse Patch-Based Deformation Estimation”, NeuroImage 105:257-268, 2015. [Minjeong Kim, Guorong Wu, Qian Wang, Seong-Whan Lee, Dinggang Shen]
  26. "Multivariate Longitudinal Shape Analysis of Human Lateral Ventricles during the First Twenty-Four Months of Life", PLOS ONE 9(9):e108306, 2014. [Lucile Bompard, Shun Xu, Martin Styner, Beatriz Paniagua, Mihye Ahn, Ying Yuan, Valerie Jewells, Wei Gao, Dinggang Shen, Hongtu Zhu, Weili Lin]
  27. "Interactive Prostate Segmentation with Adaptive Feature Selection and Manifold Regularization”, Medical Physics 41(11):111715, 2014. [Sang Hyun Park, Yaozong Gao, Yinghuan Shi, Dinggang Shen]
  28. "Atomic Connectomics Signatures for Characterization and Differentiation of Mild Cognitive Impairment", Brain Imaging and Behavior, 2014. [Jinli Ou, Li Xie, Xiang Li, Dajiang Zhu, Douglas P. Terry, A. Nicholas Puente, Rongxin Jiang,  Yaowu Chen, Lihong Wang, Dinggang Shen, Jing Zhang, L. Stephen Miller, Tianming Liu]
  29. "Manifold Regularized Multi-task Feature Learning for Multi-modality Disease Classification”, Human Brain Mapping 36(2):489-507, 2015. [Biao Jie, Daoqiang Zhang, Bo Cheng, Dinggang Shen]
  30. Integrative Analysis of Multi-Dimensional Imaging Genomics Data for Alzheimer’s Disease Prediction”, Frontiers in Aging Neuroscience 6(260):1-9, 2014. [Ziming Zhang, Heng Huang, Dinggang Shen]
  31. "Anatomy-guided Dense Individualized and Common Connectivity-based Cortical Landmarks (A-DICCCOL)”, IEEE Transactions on Biomedical Engineering 62(4):1108-1119, 2015. [Xi Jiang, Tuo Zhang, Dajiang Zhu, Kaiming Li, Hanbo Chen, Jinglei Lv, Xintao Hu, Junwei Han, Dinggang Shen, Lei Guo, Tianming Liu]
  32. "Disrupted Brain Functional Network in Internet Addiction Disorder: A Resting-State Functional Magnetic Resonance Imaging Study", PLoS ONE 9(9):e107306, 2014. [Chong-Yaw Wee, Zhimin Zhao, Pew-Thian Yap, Guorong Wu, Feng Shi, True Price, Yasong Du, Jianrong Xu, Yan Zhou, Dinggang Shen]
  33. "Supervised Discriminative Group Sparse Representation for Mild Cognitive Impairment Diagnosis”, Neuroinformatics, 2014. [Heung-Il Suk, Chong-Yaw Wee, Seong-Whan Lee, Dinggang Shen]
  34. "Non-Negative Spherical Deconvolution (NNSD) for Estimation of Fiber Orientation Distribution Function in Single-/Multi-Shell Diffusion MRI”, NeuroImage 101:750-764, 2014. [Jian Cheng, Rachid Deriche, Tianzi Jiang, Dinggang Shen, Pew-Thian Yap]
  35. "Large Deformation Diffeomorphic Registration of Diffusion-Weighted Imaging Data”, Medical Image Analysis 18(8):1290-1298, 2014. [Pei Zhang, Marc Niethammer, Dinggang Shen, Pew-Thian Yap]
  36. Subclass-based Multi-task Learning for Alzheimer's Disease Diagnosis”, Frontiers in Aging Neuroscience 6(168):1-12, 2014. [Heung-Il Suk, Seong-Whan Lee, Dinggang Shen]
  37. "Simultaneous and Consistent Labeling of Longitudinal Dynamic Developing Cortical Surfaces in Infants”, Medical Image Analysis 18(8):1274-1289, 2014. [Gang Li, Li Wang, Feng Shi, Weili Lin, Dinggang Shen]
  38. "Spatial Distribution and Longitudinal Development of Deep Cortical Sulcal Landmarks in Infants”, Neuroimage 100:206-218, 2014. [Yu Meng, Gang Li, Weili Lin, John H Gilmore, Dinggang Shen]
  39. "Deformable Segmentation of 3-D MR Prostate Images via Distributed Discriminative Dictionary and Ensemble Learning”, Medical Physics 41:072303, 2014. [Yanrong Guo, Yaozong Gao, Yeqin Shao, True Price, Aytekin Oto, Dinggang Shen]
  40. "Altered brain network modules induce helplessness in major depressive disorder", Journal of Affective Disorders 168:21-29, 2014. [Daihui Peng, Feng Shi, Ting Shen, Ziwen Peng, Chen Zhang, Xiaohua Liu, Meihui Qiu, Jun Liu, Kaida Jiang, Yiru Fang, Dinggang Shen]
  41. "Learning to Rank Atlases for Multiple-Atlas Segmentation”, IEEE Transactions on Medical Imaging 30(10):1939-1953, 2014. [Gerard Sanroma, Guorong Wu, Yaozong Gao, Dinggang Shen]
  42. "Uncertainty Estimation in Diffusion MRI Using The Non-Local Bootstrap”, IEEE Trans. On Medical Imaging 33(8):1627-1640, 2014. [Pew-Thian Yap, Hongyu An, Yasheng Chen, Dinggang Shen]
  43. "Characterization of U-shape Streamline Fibers: Methods and Applications”, Medical Image Analysis 18(5):795-807, 2014. [Tuo Zhang, Hanbo Chen, Lei Guo, Kaiming Li, Longchuan Li, Shu Zhang, Dinggang Shen, Xiaoping Hu, Tianming Liu]
  44. "Multi-task Linear Programming Discriminant Analysis for the Identification of Progressive MCI Individuals," PLOS ONE 9(5):e96458, 2014. [Guan Yu , Yufeng Liu, Kim-Han Thung, Baiguo An, Dinggang Shen]
  45. "Dynamic Development of Regional Cortical Thickness and Surface Area in Early Childhood", Cerebral Cortex, 2014. [Amanda E. Lyall, Feng Shi, Xiujuan Geng, Sandra Woolson, Gang Li, Li Wang, Robert M. Hamer, Dinggang Shen and John H. Gilmore]
  46. "Neonatal Atlas Construction Using Sparse Representation”, Human Brain Mapping 35(9):4663-4677, 2014. [Feng Shi, Li Wang, Guorong Wu, Gang Li, John H. Gilmore, Weili Lin, Dinggang Shen]
  47. "Automated Bone Segmentation from Dental CBCT images using Patch-based Sparse Representation and Convex Optimization”, Medical Physics 41:043503, 2014. [Li Wang, Ken Chung Chen, Yaozong Gao, Feng Shi, Shu Liao, Gang Li, Steve GF Shen, Jin Yan, Philip K.M. Lee, Ben Chow, Nancy X. Liu,e, James J. Xia, Dinggang Shen]
  48. "Mapping Longitudinal Development of Local Cortical Gyrification in Infants from Birth to 2 Years of Age”, Journal of Neuroscience 34(12):4228–4238, 2014. [Gang Li, Li Wang, Feng Shi, Amanda E Lyall, Weili Lin, John H Gilmore, Dinggang Shen]
  49. "Sparse multivariate autoregressive modeling for Mild Cognitive Impairment Classification”, Neuroinformatics 12(3):455-469, 2014. [Yang Li, Chong-Yaw Wee, Biao Jie, Ziwen Peng, Dinggang Shen]
  50. "Hierarchical Lung Field Segmentation with Joint Shape and Appearance Sparse Learning”, IEEE Trans. On Medical Imaging 33(9):1761-1780, 2014. [Yeqin Shao, Yaozong Gao, Yanrong Guo, Yonghong Shi, Xin Yang, Dinggang Shen]
  51. "Neurodegenerative Disease Diagnosis using Incomplete Multi-Modality Data via Matrix Shrinkage and Completion", Neuroimage 91:386-400, 2014. [Kim-Han Thung, Chong-Yaw Wee, Pew-Thian Yap, Dinggang Shen]
  52. "Measuring the Dynamic Longitudinal Cortex Development in Infants by Reconstruction of Temporally Consistent Cortical Surfaces", NeuroImage 90:266-279, 2014. [Gang Li, Jingxin Nie, Li Wang, Feng Shi, John H. Gilmore, Weili Lin, Dinggang Shen]
  53. "Structural and Diffusion Property Alterations in Unaffected Siblings of Patients with Obsessive-Compulsive Disorder", PLOS ONE 9(1): e85663, 2014. [Ziwen Peng, Feng Shi, Changzheng Shi, Guodong Miao, Qiong Yang, Wei Gao, Jason J. Wolff, Raymond C.K. Chan and Dinggang Shen]
  54. "Identifying Informative Imaging Biomarkers via Tree Structured Sparse Learning for AD Diagnosis", Neuroinformatics 12(3):381-394, 2014. [Manhua Liu, Daoqiang Zhang, Dinggang Shen]
  55. "Predictive Models of Resting State Networks for Assessment of Altered Functional Connectivity in Mild Cognitive Impairment", Brain Imaging and Behavior 84(4):542-557, 2014. [Xi Jiang, Dajiang Zhu, Kaiming Li, Tuo Zhang, Lihong Wang, Dinggang Shen, Lei Guo, Tianming Liu]
  56. "Integration of Sparse Multi-modality Representation and Anatomical Constraint for Isointense Infant Brain MR Image Segmentation", Neuroimage 89:152-164, 2014. [Li Wang, Feng Shi, Yaozong Gao, Gang Li, John H.  Gilmore, Weili Lin, Dinggang Shen]
  57. "Latent Feature Representation with Stacked Auto-Encoder for AD/MCI Diagnosis", Brain Structure and Function 220:841-859, 2015. [Heung-Il Suk, Seong-Whan Lee, Dinggang Shen]
  58. "Prostate Volumes Derived From MRI and Volume-Adjusted Serum Prostate-Specific Antigen: Correlation With Gleason Score of Prostate Cancer", American Journal of Roentgenology 201(5): 1041-1048, 2013. [Ibrahim Karademir, Dinggang Shen, Yahui Peng, Shu Liao, Yulei Jiang, Ambereen Yousuf, Gregory Karczmar, Steffen Sammet, Shiyang Wang, Milica Medved, Tatjana Antic, Scott Eggener and Aytekin Oto]
  59. "Incremental Learning with Selective Memory (ILSM): Towards Fast Prostate Localization for Image Guided Radiotherapy", IEEE Trans. on Medical Imaging 33(2): 518-534, 2014. [Yaozong Gao, Yiqiang Zhan, Dinggang Shen]
  60. "Longitudinal development of cortical-thickness, folding, and fiber-density networks in the first two years of life", Human Brain Mapping 35(8):3726-3737, 2014. [Jingxin Nie, Gang Li, Li Wang, Feng Shi, Weili Lin, John H. Gilmore, Dinggang Shen]
  61. "A Generative Probability Model of Joint Label Fusion for Multi-Atlas Based Brain Segmentation", Medical Image Analysis 18(6):881-890, 2014. [Guorong Wu, Qian Wang, Daoqiang Zhang, Feiping Nie, Heng Huang, and Dinggang Shen]
  62. "DNA Copy Number Selection Using Robust Structured Sparsity-Inducing Norms", IEEE/ACM Transactions on Computational Biology and Bioinformatics 11(1):168-181, 2014. [Vangelis Metsis, Fillia Makedon, Dinggang Shen, Heng Huang]
  63. "Resolution Enhancement of Lung 4D-CT via Group-sparsity", Medical Physics 40(12):121717, 2013. [Arnav Bhavsar, Guorong Wu, Jun Lian, Dinggang Shen]
  64. "Family Poverty Affects the Rate of Human Infant Brain Growth", PLOS ONE 8(12): e80954, 2013. [Jamie L. Hanson, Nicole Hair, Dinggang Shen, Feng Shi, John H. Gilmore, Barbara L. Wolfe, Seth D. Pollak]
  65. "Diffusion Tensor Image Registration Using Hybrid Connectivity and Tensor Features", Human Brain Mapping 35(7):3529-3546, 2014. [Qian Wang, Pew-Thian Yap, Guorong Wu, Dinggang Shen]
  66. "Diagnosis of Autism Spectrum Disorders Using Regional and Interregional Morphological Features", Human Brain Mapping 35(7):3414-3430, 2014. [Chong-Yaw Wee, Li Wang, Feng Shi, Pew-Thian Yap, Dinggang Shen]
  67. "Integration of Network Topological and Connectivity Properties for Neuroimaging Classification", IEEE Transactions on Biomedical Engineering 61(2):576-589, 2014. [Biao Jie, Daoqiang Zhang, Wei Gao, Qian Wang, Chong-Yaw Wee, Dinggang Shen]
  68. "Hierarchical Unbiased Graph Shrinkage (HUGS): A Novel Groupwise Registration Method for Large Data Set", Neuroimage 84:626-638, 2014. [Shihui Ying, Guorong Wu, Qian Wang, Dinggang Shen]
  69. "Fiber-Driven Resolution Enhancement of Diffusion-Weighted Images", Neuroimage 84:939-950, 2014. [Pew-Thian Yap, Hongyu An, Yasheng Chen, Dinggang Shen]
  70. "Inter-Modality Relationship Constrained Multi-modality Multi-Task Feature Selection for Alzheimer's Disease and Mild Cognitive Impairment Identification", Neuroimage 84:466-475, 2014. [Feng Liu, Chong-Yaw  Wee, Huafu Chen, Dinggang Shen]
  71. "Knowledge-Guided Robust MRI Brain Extraction for Diverse Large-Scale Neuroimaging Studies on Humans and Non-Human Primates", PLOS ONE 9(1): e77810, 2014. [Yaping Wang, Jingxin Nie, Pew-Thian Yap, Gang Li, Feng Shi, Xiujuan Geng, Lei Guo, Dinggang Shen]
  72. "Connectome-scale Assessments of Structural and Functional Connectivity in MCI", Human Brain Mapping 35(7):2911-2923, 2014. [Dajiang Zhu, Kaiming Li, Douglas P. Terry, A. Nicholas Puente, Lihong Wang, Dinggang Shen, L. Stephen Miller, Tianming Liu]
  73. "Segmentation of Neonatal Brain MR Images using Patch-Driven Level Sets", Neuroimage 84:141-158, 2014. [Li Wang, Feng Shi, Gang Li, Yaozong Gao, Weili Lin, John H. Gilmore, Dinggang Shen]
  74. "Mapping the Genetic Variation of Regional Brain Volumes as Explained by All Common SNPs from the ADNI Study", PLOS ONE 8(8): e71723, 2013. [Christopher Bryant, Kelly S. Giovanello, Joseph H. Ibrahim, Jing Chang, Dinggang Shen, Bradley S. Peterson, and Hongtu Zhu]
  75. "A Markov Random Field Groupwise Registration Framework for Face Recognition", IEEE Transactions on Pattern Analysis and Machine Intelligence 36(4):657-669, 2014. [Shu Liao, Dinggang Shen, Albert C.S. Chung]
  76. "Disrupted cortical network as a vulnerability marker for obsessive-compulsive disorder", Brain Structure and Function 219(5):1801-1812, 2014. [Ziwen Peng, Feng Shi, Changzheng Shi, Qiong Yang, Raymond C.K. Chan, Dinggang Shen]
  77. "Automatic Hippocampus Segmentation of 7.0 Tesla MR Images by Combining Multiple Atlases and Auto-Context Models", Neuroimage 83:335-345, 2013. [Minjeong Kim, Guorong Wu, Wei Li, Li Wang, Young-Don Son, Zang-Hee Cho, Dinggang Shen]
  78. "Topological Graph Kernel on Multiple Thresholded Functional Connectivity Networks for MCI Classification", Human Brain Mapping 35(7):2876-2897, 2014. [Biao Jie, Daoqiang Zhang, Chong-Yaw Wee, Dinggang Shen]
  79. "Spatiotemporal Uptake Characteristics of [18]F-FDG in a Rat Middle Cerebral Artery Occlusion Model", Stroke 44: 2292-2299, 2013. [Hong Yuan, Jonathan E. Frank, Yonglong Hong, Hongyu An, Cihat Eldeniz, Jingxin Nie, Adam Bunevicius, Dinggang Shen, and Weili Lin]
  80. "4D Segmentation of Brain MR Images with Constrained Cortical Thickness Variation", PLOS ONE 8(7): e64207, 2013. [Li Wang, Feng Shi, Gang Li, Dinggang Shen]
  81. "Resolution Enhancement of Lung 4D-CT Data Using Multi-Scale Inter-Phase Iterative Non-Local Means", Medical Physics 40(5):051916, 2013. [Yu Zhang, Pew-Thian Yap, Guorong Wu, Qianjin Feng, Jun Lian, Wufan Chen, Dinggang Shen]
  82. Altered Modular Organization of Structural Cortical Networks in Children with Autism”, PLOS ONE 8(5): e63131, 2013. [Feng Shi, Li Wang, Ziwen Peng, Chong-Yaw Wee, and Dinggang Shen]
  83. "Inferring Group-wise Consistent Multimodal Brain Networks via Multi-view Spectral Clustering", IEEE Trans. On Medical Imaging 32(9):1576-1586, 2013. [Hanbo Chen, Kaiming Li, Dajiang Zhu, Xi Jiang, Yixuan Yuan, Peili Lv, Tuo Zhang, Lei Guo, Dinggang Shen*, Tianming Liu*]
    *Co-corresponding authors
  84. "Development of cortical anatomical properties from early childhood to early adulthood", Neuroimage 76:216–224, 2013. [Jingxin Nie, Gang Li, Dinggang Shen]
  85. "aBEAT: A Toolbox for Consistent Analysis of Longitudinal Adult Brain MRI", PLOS ONE 8(4): e60344, 2013. [Yakang Dai, Yaping Wang, Li Wang, Guorong Wu, Feng Shi, Dinggang Shen] (free software package available)
  86. "Semi-supervised Multimodal Relevance Vector Regression Improves Cognitive Performance Estimation from Imaging and Biological Biomarkers", Neuroinformatics 11(3):339-353, 2013. [Bo Cheng, Daoqiang Zhang, Songcan Chen, Daniel Kaufer, Dinggang Shen]
  87. "Group-Constrained Sparse FMRI Connectivity Modeling for Mild Cognitive Impairment Identification", Brain Structure and Function 219(2):641-656, 2014. [Chong-Yaw Wee, Pew-Thian Yap, Daoqiang Zhang, Lihong Wang, Dinggang Shen]
  88. "Estimating the 4D Respiratory Lung Motion by Spatiotemporal Registration and Super-Resolution Image Reconstruction", Medical Physics 40(3):031710, 2013. [Guorong Wu, Qian Wang, Jun Lian, and Dinggang Shen]
  89. "More insights into early brain development through statistical analyses of eigen-structural elements of diffusion tensor imaging using multivariate adaptive regression splines", Brain Structure and Function 219(2):551-569, 2014. [Yasheng Chen, Hongtu Zhu, Hongyu An, Diane Armao, Dinggang Shen, John H. Gilmore, Weili Lin]
  90. "Multiscale Adaptive Generalized Estimating Equations for Longitudinal Neuroimaging Data", NeuroImage 72, 91-105, 2013. [Yimei Li, John H. Gilmore, Dinggang Shen, Martin Styner, Weili Lin, Hongtu Zhu]
  91. "Probabilistic MRI Brain Anatomical Atlases Based on 1,000 Chinese Subjects", PLoS ONE 8(1): e50939, 2013. [Xing Wang, Nan Wang, ZhenTao Zuo, Rong Xue, Luo Jing, Zhuo Yan, DingGang Shen, KunCheng Li]
  92. "S-HAMMER: Hierarchical Attribute-Guided, Symmetric Diffeomorphic Registration for MR Brain Images", Human Brain Mapping 35(3):1044-1060, 2014. [Guorong Wu, Minjeong Kim, Qian Wang, and Dinggang Shen]
  93. "Improving Image-Guided Radiation Therapy of Lung Cancer by Reconstructing 4D-CT from a Single Free-Breathing 3D-CT on the Treatment Day", Medical Physics 39(12):7694-709, 2012. [Guorong Wu, Jun Lian, Dinggang Shen]
  94. "Fine-Granularity Functional Interaction Signatures for Characterization of Brain Conditions", Neuroinformatics 11:301-317, 2013. [Xintao Hu, Dajiang Zhu, Peili Lv, Kaiming Li, Junwei Han, Lihong Wang, Dinggang Shen, Lei Guo, Tianming Liu]
  95. "Hierarchical Fusion of Features and Classifier Decisions for Alzheimer's Disease Diagnosis", Human Brain Mapping 35:1305-1319, 2014. [Manhua Liu, Daoqiang Zhang, Dinggang Shen]
  96. "Mapping Longitudinal Hemispheric Structural Asymmetries of the Human Cerebral Cortex from Birth to 2 Years of Age", Cerebral Cortex 24:1289-1300, 2014. [Gang Li, Jingxin Nie, Li Wang, Feng Shi, Amanda E. Lyall, Weili Lin, John H. Gilmore, Dinggang Shen]
  97. "Sparse Patch-Based Label Propagation for Accurate Prostate Localization in CT Images", IEEE Trans. On Medical Imaging 32(2):419-434, 2013. [Shu Liao, Yaozong Gao, Jun Lian, and Dinggang Shen]
  98. "Robust Anatomical Correspondence Detection by Hierarchical Sparse Graph Matching", IEEE Trans. on Medical Imaging 32(2):268-277, 2013. [Yanrong Guo, Guorong Wu, Jianguo Jiang, and Dinggang Shen]
  99. "Automated Segmentation of Mouse Brain Images Using Multi-Atlas Multi-ROI Deformation and Label Fusion", Neuroinformatics 11:35–45, 2013. [Jingxin Nie, Dinggang Shen]
  100. "iBEAT: A Toolbox for Infant Brain Magnetic Resonance Image Processing", Neuroinformatics 11:211–225, 2013. [Yakang Dai, Feng Shi, Li Wang, Guorong Wu, Dinggang Shen]
  101. "Prostate Segmentation by Sparse Representation based Classification", Medical Physics 39(10):6372-6387, 2012. [Yaozong Gao, Shu Liao, and Dinggang Shen]
  102. "Automated Delineation of Calcified Vessels in Mammography by Tracking with Uncertainty and Graphical Linking Techniques", IEEE Trans. on Medical Imaging 31(11):2143-2155, 2012. [Jie-Zhi Cheng, Chung-Ming Chen, Elodia Cole, Etta D. Pisano, Dinggang Shen]
  103. "4D Multi-Modality Tissue Segmentation of Serial Infant Images", PLoS ONE 7(9): e44596, 2012. [Li Wang, Feng Shi, Pew-Thian Yap, John H. Gilmore, Weili Lin, Dinggang Shen]
  104. "Mapping Region-specific Longitudinal Cortical Surface Expansion from Birth to 2 Years Old", Cerebral Cortex 23(11):2724-2733, 2013. [Gang Li, Jingxin Nie, Li Wang, Feng Shi, Weili Lin, John H. Gilmore, Dinggang Shen]
  105. "A Statistical Framework for Inter-Group Image Registration", Neuroinformatics, 10:367–378, 2012. [Shu Liao, Guorong Wu, Dinggang Shen] (free software package available)
  106. "Spatial Transformation of DWI Data Using Non-Negative Sparse Representation", IEEE Trans. on Medical Imaging 31(11):2035-2049, 2012. [Pew-Thian Yap, Dinggang Shen]
  107. "Prediction of Alzheimer's Disease and Mild Cognitive Impairment Using Baseline Cortical Morphological Abnormality Patterns", Human Brain Mapping 34:3411-3425, 2013. [Chong-Yaw Wee, Pew-Thian Yap, Dinggang Shen]
  108. "Diffusion Tensor Imaging Based Network Analysis Detects Alterations in Neuroconnectivity in Patients with Clinically Early Relapsing Remitting Multiple Sclerosis", Human Brain Mapping 34:3411-3425, 2013. [Yang Li, Valerie Jewells, Minjeong Kim, Yasheng Chen, Andrew Moon, Diane Armao, Luigi Troiani, Silva Markovic-Plese, Weili Lin, Dinggang Shen]
  109. "Hierarchical Patch-Based Sparse Representation - A new approach for resolution enhancement of 4D-CT lung data", IEEE Trans. Medical Imaging 31(11):1993-2005, 2012. [Yu Zhang, Guorong Wu, Pew-Thian Yap, Qianjin Feng, Jun Lian, Wufan Chen, Dinggang Shen]
  110. "LABEL: Pediatric Brain Extraction Using Learning-based Meta-algorithm", Neuroimage 62(3):1975–1986, Sep. 2012. [Feng Shi, Li Wang, Yakang Dai, John H Gilmore, Weili Lin, Dinggang Shen]
  111. "Altered Structural Connectivity in Neonates at Genetic Risk for Schizophrenia: A Combined Study Using Morphological and White Matter Networks", Neuroimage 62(3):1622–1633, Sep. 2012. [Feng Shi, Pew-Thian Yap, Wei Gao, Weili Lin, John H Gilmore, Dinggang Shen]
  112. "Resting-State Multi-Spectrum Functional Connectivity Networks for Identification of MCI Patients", PLoS ONE 7(5): e37828, 2012. [Chong-Yaw Wee, Pew-Thian Yap, Kevin Denny, Jeffrey N. Browndyke, Guy G. Potter, Kathleen A. Welsh-Bohmer, Lihong Wang, Dinggang Shen]
  113. "A Feature based Learning Framework for Accurate Prostate Localization in CT Images", IEEE Trans. on Image Processing 21(8):3546-3559, Aug. 2012. [Shu Liao, Dinggang Shen]
  114. "Machine Learning in Medical Imaging", International Journal of Biomedical Imaging, vol. 2012, Article ID 123727, 2 pages, 2012. [Kenji Suzuki, Pingkun Yan, Fei Wang, and Dinggang Shen]
  115. "DICCCOL: Dense Individualized and Common Connectivity-based Cortical Landmarks", Cerebral Cortex 23(4):786-800, 2013. [Dajiang Zhu, Kaiming Li, Lei Guo, Xi Jiang, Tuo Zhang, Degang Zhang, Hanbo Chen, Fan Deng, Carlos Faraco, Changfeng Jin, Chong-Yaw Wee, Yixuang Yuan, Peili Lv, Yan Yin, Xiaolei Hu, Lian Duan, Xintao Hu, Junwei Han, Lihong Wang, Dinggang Shen, Lloyd Miller, Lingjiang Li, Tianming Liu]
  116. "Predicting Future Clinical Changes of MCI Patients Using Longitudinal and Multimodal Biomarkers", PLoS ONE 7(3): e33182, Mar. 2012. [Daoqiang Zhang, Dinggang Shen]
  117. "The Synchronization within and Interaction between the Default and Dorsal Attention Networks in Early Infancy", Cerebral Cortex 23(3):594-603, 2013. [Wei Gao, John H Gilmore, Dinggang Shen, Jeffery Keith Smith, Hongtu Zhu, Weili Lin]
  118. "Learning Image Context for Segmentation of Prostate in CT-Guided Radiotherapy", Physics in Medicine and Biology, 57:1283-1308, 2012. [Wei Li, Shu Liao, Qianjin Feng, Wufan Chen, Dinggang Shen]
  119. "Ensemble Sparse Classification of Alzheimer's Disease", Neuroimage, 60(2):1106-1116, Jan. 2012. [Manhua Liu, Daoqiang Zhang, Dinggang Shen]
  120. "Application of Neuroanatomical Features to Tractography Clustering", Human Brain Mapping 34(9):2089-2102, 2013. [Qian Wang, Pew-Thian Yap, Guorong Wu, Dinggang Shen]
  121. Axonal Fiber Terminations Concentrate on Gyri”, Cerebral Cortex 22:2831-2839, 2012. [Jingxin Nie, Lei Guo, Kaiming Li, Yonghua Wang, Guojun Chen, Longchuan Li, Hanbo Chen, Fan Deng, Xi Jiang, Tuo Zhang, Ling Huang, Carlos Faraco, Degang Zhang, Cong Guo, Pew-Thian Yap, Xintao Hu, Gang Li, Jinglei Lv, Yixuan Yuan, Dajiang Zhu, Junwei Han, Dean Sabatinelli, Qun Zhao, L Stephen Miller, Bingqian Xu, Ping Shen, Simon Platt, Dinggang Shen, Xiaoping Hu, Tianming Liu]
  122. Hierarchical Alignment of Breast DCE-MR Images by Groupwise Registration and Robust Feature Matching", Medical Physics, 39(1):353-366. [Minjeong Kim, Guorong Wu, Dinggang Shen]
  123. Consistent Reconstruction of Cortical Surfaces from Longitudinal Brain MR Images”, Neuroimage, 59(4):3805–3820, Feb. 2012. [Gang Li, Jingxin Nie, Guorong Wu, Yaping Wang, Dinggang Shen]
  124. Identification of MCI Individuals Using Structural and Functional Connectivity Networks”, Neuroimage, 59(3):2045–2056, Feb. 2012. [Chong-Yaw Wee, Pew-Thian Yap, Daoqiang Zhang, Kevin  Denny, Jeffrey N Browndyke, Guy G Potter, Kathleen A Welsh-Bohmer, Lihong  Wang, Dinggang Shen]
  125. Directed Graph Based Image Registration”, Computerized Medical Imaging and Graphics, 36:139–151, Mar. 2012. [Hongjun Jia, Guorong Wu, Qian Wang, Yaping Wang, Minjeong Kim, and Dinggang Shen]
  126. Multi-Modal Multi-Task Learning for Joint Prediction of Multiple Regression and Classification Variables in Alzheimer's Disease”, Neuroimage, 59(2):895-907, Jan. 2012. [Daoqiang Zhang, Dinggang Shen]
  127. "A General Fast RegistrationFramework by Learning Deformation-Appearance Correlation", IEEE Transactions on Image Processing, 21(4):1823-1833, Apr. 2012. [Minjeong Kim, Guorong Wu, Pew-Thian Yap, Dinggang Shen]
  128. "Longitudinal Development of Cortical and Subcortical Gray Matter from Birth to 2 Years", Cerebral Cortex, 22(11):2478-2485, 2012. [John H. Gilmore, Feng Shi, Sandra Woolson, Rebecca C. Knickmeyer , Sarah J. Short , Weili Lin, Hongtu Zhu, Robert M. Hamer, Martin Styner, Dinggang Shen]
  129. A Computational Growth Model for Measuring Dynamic Cortical Development in the First Year of Life”, Cerebral Cortex, 22(10):2272-2284, 2012. [Jingxin Nie, Gang Li, Li Wang, John H. Gilmore, Weili Lin, Dinggang Shen]
  130. "Iterative Multi-Atlas-Based Multi-Image Segmentation with Tree-Based Registration," NeuroImage, 59(1):422-30, Jan. 2012. [Hongjun Jia, Pew-Thian Yap, Dinggang Shen]
  131. Temporal and Spatial Evolution of Brain Network Topology during the First Two Years of Life”, PLoS ONE 6(9): e25278, Sep. 2011. [Wei Gao, John H Gilmore, Kelly S Giovanello, Jeffery Keith Smith, Dinggang Shen, Hongtu Zhu, and Weili Lin]
  132. Longitudinally Guided Level Sets for Consistent Tissue Segmentation of Neonates”, Human Brain Mapping 34(4):956-972, 2013. [Li Wang, Feng Shi, Pew-Thian Yap, Weili Lin, John H. Gilmore, and Dinggang Shen]
  133. "Learning Statistical Correlation for Fast Prostate Registration in Image-guided Radiotherapy", Medical Physics, 38(11):5980-91, Nov. 2011. [Yonghong Shi, Shu Liao, Dinggang Shen]
  134. Development Trends of White Matter Connectivity in the First Years of Life”, PLoS ONE, vol. 6, no. 9, pp. e24678, 2011. [Pew-Thian Yap, Yong Fan, Yasheng Chen, John Gilmore, Weili Lin, Dinggang Shen]
  135. "Longitudinal regression analysis of spatial–temporal growth patterns of geometrical diffusion measures in early postnatal brain development with diffusion tensor imaging", Neuroimage, 58(4):993–1005, Oct. 2011. [Yasheng Chen, Hongyu An, Hongtu Zhu, Valerie Jewells, Diane Armao, Dinggang Shen, John H. Gilmore, and Weili Lin]
  136. A Novel Framework for Longitudinal Atlas Construction with Groupwise Registration of Subject Image Sequences”, Neuroimage, 59(2):1275-89, Jan. 2012. [Shu Liao, Hongjun Jia, Guorong Wu, and Dinggang Shen] (free software package available)
  137. Registration of Longitudinal Brain Image Sequences with Implicit Template and Spatial-Temporal Heuristics”, Neuroimage, 59(1):404-421, Jan. 2012. [Guorong Wu, Qian Wang, Dinggang Shen]
  138. "Automatic Segmentation of NeonatalImages Using Convex Optimizationand Coupled Level Sets", NeuroImage, 58:805-817, Jul. 2011. [Li Wang, Feng Shi, Weili Lin, John H. Gilmore, Dinggang Shen]
  139. Hierarchical Anatomical Brain Networks for MCI Prediction: Revisiting Volumetric Measures”, PLoS ONE, 6(7): e21935, Jul. 2011. [Luping Zhou, Yaping Wang, Yang Li, Pew-Thian Yap, Dinggang Shen]
  140. "POPTRACT: Population-Based Tractography", IEEE Trans. on Medical Imaging, 30(10):1829-1840, Oct. 2011. [Pew-Thian Yap, John H. Gilmore, Weili Lin, Dinggang Shen]
  141. "Consistent Sulcal Parcellation of Longitudinal Cortical Surfaces", NeuroImage, 57(1):76-88, Jul. 2011. [Gang Li, Dinggang Shen]
  142. "SharpMean: Groupwise Registration Guided by Sharp Mean Image and Tree-based Registration", NeuroImage, 56(4): 1968-1981, Jun. 2011. [Guorong Wu, Hongjun Jia, Qian Wang, Dinggang Shen] (free software package available)
  143. "Infant Brain Atlases from Neonates to 1- and 2-year-olds", PLoS ONE, 6(4): e18746, Apr. 2011. [Feng Shi, Pew-Thian Yap, Guorong Wu, Hongjun Jia, John H. Gilmore, WeiliLin, Dinggang Shen] (free software package available)
  144. "Sex Differences in Grey Matter Atrophy Patterns Among AD and aMCI Patients: Results from ADNI", Neuroimage, 56:890-906, 2011. [Martha Skup, Hongtu Zhu, Yaping Wang, Kelly S. Giovanello, Ja-an Lin, Dinggang Shen, Feng Shi, Wei Gao, Weili Lin, Yong Fan, Heping Zhang and The Alzheimer's Disease Neuroimaging Initiative]
  145. "Multimodal Classification of Alzheimer’s Disease and Mild Cognitive Impairment", Neuroimage, 55(3):856-867, Apr. 2011. [Daoqiang Zhang, Yaping Wang, Luping Zhou, Hong Yuan, Dinggang Shen]
  146. "SPHERE: SPherical Harmonic Elastic REgistration of HARDI Data", Neuroimage, 55(2):545-556, Mar. 2011. [Pew-Thian Yap, Yasheng Chen, Hongyu An, Yang Yang, John H Gilmore, Weili Lin, Dinggang Shen]

  147. "Discriminant analysis of longitudinal cortical thickness changes in Alzheimer's disease using dynamic and network features", Neurobiology of Aging, 33:427.e15– 427.e30, 2011. [Yang Li, Yaping Wang, Guorong Wu, Feng Shi, Luping Zhou, Weili Lin, Dinggang Shen]
  148. "Multiscale Adaptive Regression Models for Neuroimaging Data", Journal of the Royal Statistical Society. Series B, Statistical methodology, vol. 73, pp. 559-578, Sep. 2011. [Yimei Li, Hongtu Zhu, Dinggang Shen, Weili Lin, John H. Gilmoreand Joseph G. Ibrahim]
  149. "Feature-based Groupwise Registration by Hierarchical Anatomical Correspondence Detection", Human Brain Mapping, 33(2):253–271, Feb. 2012. [Guorong Wu, Qian Wang, Hongjun Jia, Dinggang Shen] (free software package available)
  150. "Enriched White Matter Connectivity Networks for Accurate Identification of MCI Patients", NeuroImage, 54(3):1812-1822, Feb. 2011. [Chong-Yaw Wee, Pew-Thian Yap, Wenbin Li, Kevin Denny, Jeffrey N. Browndyke, Guy G. Potter, Kathleen A. Welsh-Bohmer, Lihong Wang, Dinggang Shen]
  151. "Intermediate Templates Guided Groupwise Registration of Diffusion Tensor Images," NeuroImage, 54:928-939, 2011. [Hongjun Jia, Pew-Thian Yap, Guorong Wu, Qian Wang, Dinggang Shen]
  152. Brain Anatomical Networks in Early Human Brain Development”, Neuroimage, 54(3): 1862-1871, Feb. 2011. [Yong Fan, Feng Shi, Jeffrey Keith Smith, Weili Lin, John H. Gilmore, and Dinggang Shen]
  153. "CENTS: Cortical Enhanced Neonatal Tissue Segmentation", Human Brain Mapping, 32:382–396, Mar. 2011. [Feng Shi, Dinggang Shen, Pew-Thian Yap, Yong Fan, Jie-Zhi Cheng, Hongyu An, Lawrence L. Wald, Guido Gerig, John H. Gilmore, and Weili Lin]
  154. "Cerebral Blood Volume in Alzheimer’s Disease and Correlation with Tissue Structural Integrity", Neurobiology of Aging, 31(12):2038-2046, December 2010. [Jinsoo Uh, Kelly Lewis-Amezcua, Kristin Martin-Cook, Myron Weiner, Ramon Diaz-Arrastia, Michael Devous, Sr., Dinggang Shen, Hanzhang Lu]
  155. "Human Brain Connectomics:Networks, Techniques, and Applications," IEEE Signal Processing Magazine, 27(4), 131-134, July 2010. [Pew-Thian Yap, Guorong Wu, Dinggang Shen]
  156. "Segmenting CT prostate images using population and patient-specific statistics for radiotherapy", Medical Physics, 37(8), 4121-4132, Aug. 2010. [Qianjin Feng, Mark Foskey, Wufan Chen, Dinggang Shen]
  157. "Tissue Probability Map Constrained 4-D Clustering Algorithm for Increased Accuracy and Robustness in Serial MR Brain Image Segmentation", International Journal of  Computational Intelligence and Healthcare Informatics, 3(3):286-298, 2011. [Zhong Xue, Dinggang Shen, Hai Li, and Stephen Wong]
  158. "ABSORB: Atlas Building by Self-Organized Registration and Bundling", NeuroImage, 51(3):1057-1070, Mar. 2010. [Hongjun Jia, Guorong Wu, Qian Wang, Dinggang Shen] (free software package available)
  159. "Construction of Multi-Region-Multi-Reference Atlases for Neonatal Brain MRI Segmentation", NeuroImage, 51(2):684-693, Jun 2010. [Feng Shi, Pew-Thian Yap, Yong Fan, John H Gilmore, Weili Lin, Dinggang Shen]
  160. "Attribute Vector Guided Groupwise Registration", NeuroImage, 50(4):1485-1496, May 2010. [Qian Wang, Guorong Wu, Pew-Thian Yap, Dinggang Shen]
  161. "F-TIMER: Fast Tensor Image Morphing for Elastic Registration", IEEE Trans. on Medical Imaging, vol. 29, pp. 1192-1203, 2010. [Pew-Thian Yap, Guorong Wu, Hongtu Zhu, Weili Lin, Dinggang Shen]
  162. "TPS-HAMMER: Improving HAMMER Registration Algorithm by Soft Correspondence Matching and Thin-Plate Splines Based Deformation Interpolation", NeuroImage, 49(3):2225-2233, Feb  2010 . [Guorong Wu, Pew-Thian Yap, Minjeong Kim, Dinggang Shen] (free software package available)
  163. "Neonatal brain image segmentation in longitudinal MRI studies", Neuroimage, 49(1):391-400, Jan  2010. [Feng Shi, Yong Fan, Songyuan Tang, John H. Gilmore, Weili Lin, Dinggang Shen]
  164. "Groupwise Registration Based on Hierarchical Image Clustering and Atlas Synthesis", Human Brain Mapping, 31(8):1128-1140, Jan. 2010. [Qian Wang, Liya Chen, Pew-Thian Yap, Guorong Wu, Dinggang Shen]
  165. "STEP: Spatiotemporal enhancement pattern for MR-based breast tumor diagnosis", Medical Physics, 36(7): 3192-3204, July 2009. [Yuanjie Zheng, Sarah Englander, Sajjad Baloch, Evangelia I. Zacharaki, Yong Fan, Mitchell D. Schnall, Dinggang Shen]
  166. Sampling the spatial patterns of cancer: Optimized biopsy procedures for estimating prostate cancer volume and Gleason Score”, Medical Image Analysis, (13)4: 609-620, August 2009. [Yangming Ou, Dinggang Shen, Jianchao Zeng, Leon Sun, Judd Moul, Christos Davatzikos]
  167. "Estimating Myocardial Motion by 4D Image Warping", Pattern Recognition, 42(11): 2514-2526, November 2009. [Hari Sundar, Harold Litt, Dinggang Shen]
  168. "TIMER: Tensor Image Morphing for Elastic Registration", Neuroimage, 47(2):549-63, Aug 15 2009. [Pew-Thian Yap, Guorong Wu, Hongtu Zhu, Weili Lin, Dinggang Shen]
  169. "White matter abnormalities revealed by diffusion tensor imaging in non-demented and demented HIV+ patients", Neuroimage, 47(4): 1154-1162, October 1 2009. [Yasheng Chen, Hongyu An, Hongtu Zhu, Taylor Stone, J. Keith Smith, Colin Hall, Elizabeth Bullitt, Dinggang Shen, Weili Lin]
  170. "Emergence of the brain’s default network: Evidence from two-week-old to 2-year-old healthy pediatric subjects", PNAS, 106(16): 6790-6795, April 2009. [Wei Gao, Hongtu Zhu, Kelly S. Giovanello, J Keith Smith, Dinggang Shen, John H Gilmore, Weili Lin]
  171. "Longitudinal pattern of regional brain volume change differentiates normal aging from MCI", Neurology, 72: 1906-1913, June 2009. [Ira Driscoll, Christos Davatzikos, Yang An, Xiaoying Wu, Dinggang Shen, Michael Kraut, Susan M Resnick]
  172. "RABBIT: Rapid Alignment of Brains by Building Intermediate Templates", Neuroimage, 47(4):1277-87, Oct 1 2009. [Songyuan Tang, Yong Fan, Dinggang Shen]
  173. "Non-diffeomorphic registration of brain tumor images by simulating tissue loss and tumor growth", Neuroimage, 46: 762-774, 2009. [Evangelia Zacharaki, Cosmina Hogea, Dinggang Shen, George Biros, Christos Davatzikos]
  174. "MRI and PET dual detection for serial assessment of embryonic stem cells grafted in normal and infarcted myocardium", Radiology, 250(3): 821-829, March 2009. [Hui Qiao, Hualei Zhang, Yuanjie Zheng, Datta E. Ponde, Dinggang Shen, Fabao Gao, Ashley Bakken, Alexander Schmitz, Hank F Kung, Victor A. Ferrari, and Rong Zhou]
  175. "Fast Image Registration by Hierarchical Soft Correspondence Detection", Pattern Recognition, 42: 954-961, May 2009. [Dinggang Shen]
  176. "A New Statistically-Constrained Deformable Registration Framework for MR Brain Images", International Journal of Medical Engineering and Informatics, 1(3): 357:367, 2009. [Zhong Xue, Dinggang Shen]
  177. "Computer-Assisted Segmentation of White Matter Lesions in 3D MR images, Using Pattern Recognition", Academic Radiology, 15(3):300-313, March 2008. [Zhiqiang Lao, Dinggang Shen, Dengfeng Liu, Abbas F Jawad, Elias R Melhem, Lenore J Launer, Nick R Bryan, Christos Davatzikos]
  178. "ORBIT: A Multiresolution Framework for Deformable Registration of Brain Tumor Images", IEEE Trans. on Medical Imaging, 27(8):1003-1017, Aug. 2008. [Evangelia I. Zacharaki, Dinggang Shen, Seung-Koo Lee and Christos Davatzikos]
  179. "Segmenting Lung Fields in Serial Chest Radiographs Using Both Population-based and Patient-specific Shape Statistics", IEEE Trans. on Medical Imaging, 27(4):481~494, 2008. [Yonghong Shi, Feihu Qi, Zhong Xue, Liya Chen, Kyoko Ito, Hidenori Matsuo, Dinggang Shen]
  180. "Detection of Prodromal Alzheimer's Disease via Pattern Classification of MRI", Neurobiology of Aging, 29(4):514-523, April 2008. [C. Davatzikos, Y. Fan, X. Wu, D. Shen, S.M. Resnick]
  181. "Multimodality Image Registration by Maximization of Quantitative-Qualitative Measure of Mutual Information", Pattern Recognition, 41(1), 285-298, 2008. [Hongxia Luan, Feihu Qi, Zhong Xue, Liya Chen, Dinggang Shen]
  182. "Registering Histological and MR Images of Prostate for Image-based Cancer Detection", Academic Radiology, 14(11):1367-1381, November 2007. [Yiqiang Zhan, Yangming Ou, Michael Feldman, John Tomaszeweski, Christos Davatzikos, Dinggang Shen]
  183. "Multivariate examination of brain abnormality using both structural and functional MRI", Neuroimage, 36:1189–1199, 2007. [Yong Fan, Hengyi Rao, Hallam Hurt, Joan Giannetta, Marc Korczykowski, David Shera, Brian B. Avants, James. C. Gee, Jiongjiong Wang, and Dinggang Shen]
  184. "Unaffected Family Members and Schizophrenia Patients Share Brain Structure Patterns: a High-Dimensional Pattern Classification Study Biological Psychiatry", Biological Psychiatry, 63: 118-124, 2008.  [Yong Fan, Raquel E. Gur, Ruben C. Gur, Dinggang Shen, Monica E. Calkins, Christos Davatzikos]
  185. "Targeted Prostate Biopsy Using Statistical Image Analysis", IEEE Trans. on Medical Imaging, 26(6):779-788, June 2007. [Y. Zhan, D. Shen, J. Zeng, L. Sun, G. Fichtinger, J. Moul, C. Davatzikos]
  186. "COMPARE:Classification Of Morphological Patterns using Adaptive Regional Elements", IEEE Trans. on Medical Imaging, 26(1): 95-105, January 2007. [Yong Fan, Dinggang Shen, Ruben C. Gur, Raquel E. Gur, and Christos Davatzikos]
  187. "Coregistration of MR and SPECT Images for Non-invasive Localization of Stem Cells Grafted in the Infarcted Rat Myocardium", Molecular Imaging & Biology, 9(1):24-31, Jan-Feb, 2007. [Dinggang Shen, Dengfeng Liu, Zixiong Cao, Paul D. Acton, Rong Zhou]
  188. "Image Registration by Local Histogram Matching", Pattern Recognition, 40:1161-1172, 2007. [Dinggang Shen]
  189. "Hippocampus Volume Loss Due to Chronic Heavy Drinking", Alcoholism: Clinical and Experimental Research, 30(11):1866-70, Nov 2006. [Beresford TP, Arciniegas DB, Alfers J, Clapp L, Martin B, Du Y, Liu D, Shen D, Davatzikos C]
  190. "Hypercortisolism In Alcohol Dependence and Its Relation to Hippocampal Volume Loss", Journal of Studies on Alcohol, 76(6):861~867, Nov 2006. [Beresford TP, Arciniegas DB, Alfers J, Clapp L, Martin B, Beresford HF, Du Y, Liu D, Shen D, Davatzikos C, Laudenslager ML]
  191. "Simulating Deformations of MR Brain Images for Evaluation of Registration Algorithms", Neuroimage, 33:855-866, 2006. [Zhong Xue, Dinggang Shen, Bilge Karacali, Joshua Stern, David Rottenberg, Christos Davatzikos]
  192. "Learning-Based Deformable Registration of MR Brain Images", IEEE Trans. Medical Imaging, 25(9):1145-1157, Sept. 2006. [Guorong Wu, Feihu Qi, Dinggang Shen]
  193. "Statistical Representation of High-Dimensional Deformation Fields with Application to Statistically-Constrained 3D Warping", Medical Image Analysis, 10:740-751, 2006. [Zhong Xue, Dinggang Shen, Christos Davatzikos]
  194. "Deformable registration of brain tumor images via a statistical model of tumor-induced deformation", Medical Image Analysis, 10:752-763, 2006. [Ashraf Mohamed, Evangelia Zacharaki, Dinggang Shen, Christos Davatzikos]
  195. "Puberty-related influences on brain development", Molecular and Cellular Endocrinology, Volumes 254-255, Pages 154-162, 25 July 2006. [Jay N. Giedd, Liv S. Clasen, Rhoshel Lenroot, Dede Greenstein, Gregory L. Wallace, Sarah Ordaz, Elizabeth A. Molloy, Jonathan D. Blumenthal, Julia W. Tossell, Catherine Stayer, Carole A. Samango-Sprouse, Dinggang Shen, Christos Davatzikos, Deborah Merke and George P. Chrousos]
  196. "Past adult lead exposure is linked to neurodegeneration measured by brain MRI", Neurology, 66:1476-1484, 2006. [Walter F. Stewart, Brian S. Schwartz, Christos Davatzikos, Dinggang Shen, Dengfeng Liu, Xiaoying Wu, Andrew C. Todd, Weiping Shi, Susan Bassett, David Youssem]
  197. "Deformable Segmentation of 3-D Ultrasound Prostate Images Using Statistical Texture Matching Method", IEEE Trans. on Medical Imaging, 25(3):256-272, March 2006. [Yiqiang Zhan, Dinggang Shen]
  198. "CLASSIC:Consistent Longitudinal Alignment and Segmentation for Serial Image Computing", NeuroImage, 30:388-399, 2006. [Zhong Xue, Dinggang Shen, Christos Davatzikos]
  199. "An Adaptive Error Penalization Method for Training an Efficient and Generalized SVM", Pattern Recognition, (39):342-350, 2006. [Yiqiang Zhan, Dinggang Shen]
  200. "Classifying spatial patterns of brain activity with machine learning methods: application to lie detection", Neuroimage, 28:663-668, 2005. [C. Davatzikos, K. Ruparel, Y. Fan, D. Shen, M. Acharyya, J. Loughead, R.C. Gur, and D. Langleben]
  201. "Whole-brain morphometric study of schizophrenia reveals a spatially complex set of focal abnormalities", Archives of General Psychiatry, 62:1218-1227, Nov 2005. [Christos Davatzikos, Dinggang Shen, Ruben C. Gur, Xiaoyng Wu, Dengfeng Liu, Yong Fan, Paul Hughett, Bruce I. Turetsky, Raquel E. Gur]
  202. "Spatio-temporal maturation patterns of murine brain quantified via diffusion tensor MRI and deformation-based morphometry", Proceedings of the National Academy of Sciences (PNAS), 102(19):6978–6983, May 10, 2005. [Ragini Verma, Susumu Mori, Dinggang Shen, Paul Yarowsky, Jiangyang Zhang, Christos Davatzikos]
  203. "Design Efficient Support Vector Machine for Fast Classification", Pattern Recognition, 38:157-161, 2005. [Yiqiang Zhan, Dinggang Shen]
  204. "Automated Morphometric Study of Brain Variation in XXY Males", Neuroimage, 23(2):648-653, Oct 2004. [Dinggang Shen, Dengfeng Liu, Hong Liu, Liv Clasen, Jay Giedd, Christos Davatzikos]
  205. "Determining Correspondence in 3D MR Brain Images Using Attribute Vectors as Morphological Signatures of Voxels", IEEE Trans. on Medical Imaging, 23(10): 1276-1291, Oct 2004. [Zhong Xue, Dinggang Shen and Christos Davatzikos]
  206. "Deformable Registration of Cortical Structures via Hybrid Volumetric and Surface Warping", NeuroImage, 22:1790-1801, 2004 . [Tianming Liu, Dinggang Shen, Christos Davatzikos]
  207. "Measuring Temporal Morphological Changes Robustly in Brain MR Images Via 4-Dimensional Template Warping", NeuroImage,21:1508-1517, April 2004. [Dinggang Shen, Christos Davatzikos]
  208. "Optimization of Biopsy Strategy by A Statistical Atlas of Prostate Cancer Distribution", Medical Image Analysis, 8(2): 139-150, 2004 . [Dinggang Shen, Zhiqiang Lao, Jianchao Zeng, Wei Zhang, Isabel A. Sesterhenn, Leon Sun, Judd W. Moul, Edward H. Herskovits, Gabor Fichtinger, Christos Davatzikos]
  209. "Lane detection and tracking using B-snake", Image and Vision Computing, 22(4):269-280, April 2004. [Yue Wang, Eam Khwang Teoh, and Dinggang Shen] (The Most Cited Paper Award for the journal Image and Vision Computing (selected from all journal articles published between the years 2004-2007)
  210. "Morphological classification of brains via high-dimensional shape transformations and machine learning methods", NeuroImage, Vol 21(1), pp 46-57, 2004. [Zhiqiang Lao, Dinggang Shen, Zhong Xue, Bilge Karacali, Susan M. Resnick, and Christos Davatzikos]
  211. "Spatial Normalization of Diffusion Tensor Fields", Magnetic Resonance in Medicine, 50 (1): 175-182 JUL 2003. [Dongrong XU, Susumu Mori, Dinggang Shen, Peter C. M. van Zijl, Christos Davatzikos]
  212. "Segmentation of Prostate Boundaries from Ultrasound Images Using Statistical Shape Model", IEEE Trans. on Medical Imaging, 22(4):539-551, April 2003. [Dinggang Shen, Yiqiang Zhan, Christos Davatzikos] (final version)
  213. "Hierarchical Active Shape Models, Using the Wavelet Transform", IEEE Trans. on Medical Imaging, 22(3):414-423, March 2003. [Christos Davatzikos, Xiaodong Tao, Dinggang Shen]
  214. "Very High Resolution Morphometry Using Mass-Preserving Deformations and HAMMER Elastic Registration", NeuroImage, 18(1): 28-41, Jan 2003. [Dinggang Shen, Christos Davatzikos] (Used for this issue's cover)
  215. "HAMMER:Hierarchical Attribute Matching Mechanism for Elastic Registration", IEEE Trans. on Medical Imaging, 21(11):1421-1439, Nov 2002. [Dinggang Shen, Christos Davatzikos](Best Paper Award, from MMBIA 2001) (2006 Best Paper Award, from IEEE Signal Processing Society 2007) (source code),(standalone software package)
  216. "Spatial Normalization of Spine MR Images, for Statistical Correlation of Lesions with Clinical Symptoms", Radiology, 224(3):919-926, Sept 2002. [Christos Davatzikos, Dengfeng Liu, Dinggang Shen, Edward H. Herskovits]
  217. "Measuring Size and Shape of the Hippocampus in MR Images Using a Deformable Shape Model", NeuroImage, 15(2): 422-434, Feb 2002. [Dinggang Shen, Scott Moffat, Susan M. Resnick, and Christos Davatzikos]
  218. "A constrain relationship for reflectional symmetry and rotational symmetry", SPIE Journal of Electronic Imaging, 10(4): 998-1002, Oct. 2001. [Dinggang Shen, Horace H. S. Ip, and Eam Khwang Teoh] (Proofreading version)
  219. "A Framework for Predictive Modeling of Anatomical Deformations", IEEE Trans. on Medical Imaging, Aug. 2001. [C. Davatzikos, Dinggang Shen, Ashraf Mohamed, and Stelios K. Kyriacou]
  220. "Robust detection of skewed symmetries by combining local and semi-local affine invariants", Pattern Recognition, 34(7):1417-1428, 2001 . [Dinggang Shen, Horace H. S. Ip, and Eam Khwang Teoh]
  221. "An efficient fuzzy algorithm for aligning shapes under affine transformations", Pattern Recognition, 34(6):1171-1180, June 2001. [Zhong Xue, Dinggang Shen, and Eam Khwang Teoh]
  222. "An energy of asymmetry for accurate detection of global reflection axes", Image and Vision Computing, Volume 19, Issue 5, pp.283-297, April 2001. [Dinggang Shen, Horace H. S. Ip, and Eam Khwang Teoh]
  223. "An adaptive-focus statistical shape model for segmentation and shape modeling of 3D brain structures", IEEE Trans. on Medical Imaging, 20(4):257-270, April 2001. [Dinggang Shen, Edward H. Herskovits, C. Davatzikos] (Demo)
  224. "Affine invariant detection of perceptually parallel 3D planar curves", Pattern Recognition, 33(11):1909-1918, Nov. 2000.[Dinggang Shen, Horace H. S. Ip, and Eam Khwang Teoh]
  225. "An adaptive-focus deformable model using statistical and geometric information", IEEE Trans. on Pattern Analysis and Machine Intelligence (PAMI), 22(8):906-913, August 2000. [Dinggang Shen, C. Davatzikos]
  226. "Lane detection using spline model", Pattern Recognition Letters, 21(8): 677-689, July 2000. [Yue Wang, Dinggang Shen, and Eam Khwang Teoh]
  227. "Symmetry detection by generalized complex (GC) moments: a close-form solution", IEEE Trans. on Pattern Analysis and Machine Intelligence (PAMI), 21(5):466-476, May 1999. [Dinggang Shen, Horace H. S. Ip, Kent K T Cheung, and Eam Khwang Teoh]
  228. "Affine invariant image retrieval by correspondence matching of shapes", Image and Vision Computing, 17(7): 489-499, May, 1999.[Dinggang Shen, Wai-him Wong and Horace H S Ip]
  229. "Discriminative wavelet shape descriptors for invariant recognition of 2-D patterns", Pattern Recognition, 32(2):151-165, Feb. 1999. [Dinggang Shen and Horace H S Ip]
  230. "MRF regularizaton models for adaptive segmentation of non-uniform images", IEE Proceedings on Vision, Image and Signal Processing, Vol. 145, Issue 5, pp.322-332, October 1998. [Dinggang Shen and Horace H S Ip]
  231. "An affine-invariant active contour model (AI-snake) for model-based segmentation", Image and Vision Computing 16(2):135-146, 1998. [Horace H S Ip and Dinggang Shen]
  232. "Generalized affine invariant image normalization", IEEE Trans. on Pattern Analysis and Machine Intelligence (PAMI), 19(5):431-440, May 1997. [Dinggang Shen and Horace H S Ip]
  233. "A Hopfield neural network for adaptive image segmentation: an active surface paradigm", Pattern Recognition Letters, 18:37-48, 1997. [Dinggang Shen and Horace H S Ip]
  234. "Optimal axes for defining the orientations of shapes", IEE Electronic Letters, 32(20), 1873-1874, Sept. 1996. [Dinggang Shen and Horace H S Ip]
  235. "Edge orientation based active contour algorithm", Journal of Infrared and Millimeter Waves, 16(1):45-50, 1997. [Dinggang Shen and Feihu Qi]
  236. "Real-time image recognition system", High Technology Letters, v6 n7, p. 37-40, Jul 1996. [Dinggang Shen, Qi Feihu and Li Yanbing]
  237. "Video classification and indexing", Journal of Image and Graphics, 1(3), 1996.
  238. "Method for indexing objects in video image", Journal of Computer Applications and Software.
  239. "MPNN used for image object recognition", Journal of PR&AI.
  240. "A system for car license recognition", Journal of Radio Communication Technology, No.5, 1995.
  241. "Detection of arbitrary image orientation", Journal of Shanghai Jiao Tong University, 29(4), 1995.
  242. "A knowledge-based target recognition system", Journal of Infrared and Millimeter Waves, 14(3), 1995.
  243. "Probabilistic neural network based on the neighbor statistics character and its application in automatic target recognition", Journal of Infrared and Millimeter Waves, 14(1), 1995.
  244. "RGSA based moving target location", Journal of Radio Engineering, No.1, 1995.
  245. "Wavelet transform for rotation invariant image object recognition", Journal of PR&AI, Vo.8, No.1, 1995.
  246. "Method for orientation detection of rotationally symmetric image", Journal of PR&AI, Vol.8, No.4, 1995.
  247. "A location method of moving object from image sequence", Journal of Shanghai Jiao Tong University, 28(6), 1994.
  248. "Adaptive image segmentation by neural network", Journal of Shanghai Jiao Tong University, Vol.28 1994.
  249. "Invariant Image Recognition by Normalization", Journal of Shanghai Jiao Tong University, 28(3), 1994.
  250. "Liked-BAM neural network for image recognition ", Journal of Shanghai Jiao Tong University, 28(3), 1994.
  251. "A FDO neural network model and its application to image recognition", Journal of System Engineering & Electronics, 16(9):47-56,1994.
  252. "A learning method for associative memory model", Journal of PR&AI, Vol.7,No.1, March 1994.
  253. "A neural network model for image recognition", Journal of Shanghai Jiao Tong University, 27(6),14-18, 1993.
  254. "Development of a high performance outdoor autonomous navigation system", EEE Research Journal, Singapore, ISSN 0218-2602, Jan. 1999, pp60-63.

"Fiber-Driven Resolution Enhancement of Diffusion-Weighted Images", accepted for Neuroimage, 2013. [Pew-Thian Yap, Hongyu An, Yasheng Chen, Dinggang Shen]