HAMMER Suite

The HAMMER Suite toolkit provides a user-friendly interface for efficient image processing and analysis on human MRI brain images. Image processing is completed by a flexible pipeline which provides fully automatic and powerful functions, such as skull stripping, image cerebellum removal, image segmentation, HAMMER based image registration, and RAVENS map generation for voxel based analysis.

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Reference

1.  Shen, D., Davatzikos, C.: HAMMER: Hierarchical attribute matching mechanism for elastic registration. Medical Imaging, IEEE Transactions on 21 (2002) 1421-1439

2.  Wu, G., Yap, P.-T., Kim, M., Shen, D.: TPS-HAMMER: Improving HAMMER registration algorithm by soft correspondence matching and thin-plate splines based deformation interpolation. NeuroImage 49 (2010) 2225-2233