Zhen, W., Alcauter, S., Jin, K., Peng, Z., Gao, W. “Graph Theoretical Analysis of Sedation’s Effect on Whole Brain Functional System in School-Aged Children”. Accepted for Brain Connectivity
Wang, L., Shi, F., Yap, PT., Gilmore, J., Lin, W., Shen, D. "4D Multi-Modality Tissue Segmentation of Serial Infant Images", accepted for PLOS ONE, 2012
Li, G., Nie, J., Wang, L., Shi, F., Lin, W., Gilmore, J., Shen, D. "Mapping Region-specific Longitudinal Cortical Surface Expansion from Birth to 2 Years Old", accepted for Cerebral Cortex, 2012
Liao, S., Wu, G., Shen, D. "A Statistical Framework for Inter-Group Image Registration", accepted for Neuroinformatics
Yap, PT., Shen, D. "Spatial Transformation of DWI Data Using Non-Negative Sparse Representation", accepted for IEEE Trans. on Medical Imaging, 2012
Wee, CY., Yap, PT., Shen, D. "Prediction of Alzheimer's Disease and Mild Cognitive Impairment Using Baseline Cortical Morphological Abnormality Patterns", accepted for Human Brain Mapping, 2012
Li, Y., Jewells, V., Kim, M., Chen, Y., Moon, A., Armao, D., Troiani, L., Markovic-Plese, S., Lin, W., Shen, D. "Diffusion Tensor Imaging Based Network Analysis Detects Alterations in Neuroconnectivity in Patients with Clinically Early Relapsing Remitting Multiple Sclerosis", accepted for Human Brain Mapping, 2012
Shu, L., Shen, D. "A Feature based Learning Framework for Accurate Prostate Localization in CT Images", accepted for IEEE Trans. On Image Processing, 2012
Giovanello KS and Schacter DL. "Reduced specificity of hippocampal and posterior ventrolateral prefrontal activity during relational retrieval in normal aging." Journal of Cognitive Neuroscience, 24(1):159-70 2012
Giovanello KS, De Brigard F, Ford JH, Kaufer DI, Burke JR, Browndyke JN, and Welsh-Bohmer KA. "Event-related functional magnetic resonance imaging changes during relational retrieval in normal aging and amnestic Mild Cognitive Impairment." Journal of the International Neuropsychological Society 18, 1–12 2012
Skup, M., Zhu, H.T., and Zhang HP. "Multiscale adaptive marginal analysis of longitudinal neuroimaging data with time-varying covariates." Biometrics In press, 2012
Yuan, Y., Zhu, H.T., Styner, M., J. H. Gilmore., and Marron, J. S. "Varying coefficient model for modeling diffusion tensors along white matter bundles." Annals of Applied Statistics In press, 2012
Li, YM, John Gilmore, JP Wang, M. Styner, Weili Lin, and Zhu, HT. "Two-stage spatial adaptive analysis of twin neuroimaging data." IEEE Transactions on Medical Imaging In press, 2012
G. R. Wilkins, O. M. Houghton and A. L. Oldenburg. "Automated Segmentation of Intraretinal Cystoid Fluid in Optical Coherence Tomography." IEEE Transactions on Biomedical Engineering, 54(4):1109-1114, 2012
Yu Zhang, Guorong Wu, Pew-Thian Yap, Qianjin Feng, Jun Lian, Wufan Chen, Dinggang Shen. "Hierarchical Patch-Based Sparse Representation - A new approach for resolution enhancement of 4D-CT lung data." Accepted for IEEE Trans. Medical Imaging 2012
Feng Shi, Li Wang, Yakang Dai, John H Gilmore, Weili Lin, Dinggang Shen. "Pediatric Brain Extraction Using Learning-based Meta-algorithm." Accepted for Neuroimage 2012
Feng Shi, Pew-Thian Yap, Wei Gao, Weili Lin, John H Gilmore, Dinggang Shen. "Altered Structural Connectivity in Neonates at Genetic Risk for Schizophrenia: A Combined Study Using Morphological and White Matter Networks." Accepted for Neuroimage, 2012
Chong-Yaw Wee, Pew-Thian Yap, Kevin Denny, Jeffrey N. Browndyke, Guy G. Potter, Kathleen A. Welsh-Bohmer, Lihong Wang, Dinggang Shen. "Resting-State Multi-Spectrum Functional Connectivity Networks for Identification of MCI Patients." Accepted for PLoS ONE, 2012
Liao Shu, Dinggang Shen. "A Feature based Learning Framework for Accurate Prostate Localization in CT Images." Accepted for IEEE Trans. on Image Processing, 2012
Lai HY, Liao LD, Lin CT, Chen YY, Hsu JH, Chen HF, Tsang S, Chang JY, Shih YY. "Design, simulation and experimental validation of a novel flexible neural probe for deep brain stimulation and multichannel recording." J Neural Eng (in press)
Smith CT, Boettiger CA. "Age modulates the effect of COMT genotype on delay discounting behavior." Psychopharmacology (Berl). 2012 Feb 18. [Epub ahead of print]
Yundi Shi, Sarah J Short, Rebecca C Knickmeyer, Jiaping Wang, Christopher L Coe, Marc Niethammer, John H Gilmore, Hongtu Zhu, Martin A Styner. "Diffusion Tensor Imaging–Based Characterization of Brain Neurodevelopment in Primates." Cerebral Cortex, 2012.
Liao LD, Lin CT, Shih YY, Lai HY, Wang PH, Duong TQ, Chang JY, Chen YY, Li ML. "Investigation of the cerebral hemodynamic response function in single blood vessels by functional photoacoustic microscopy." J Biomed Opt (in press).
Shih YY, Muir ER, Li G, De La Garza BH, and Duong TQ. "High resolution 3D microangiography of the rat ocular circulation." Radiology (in press).
Liao LD, Li ML, Shih YY, Lai HY, Chen YY, and Lin CT. "Transcranial imaging of functional cerebral hemodynamic changes in single blood vessels using in vivo photoacoustic microscopy." J Cereb Blood Flow Metab (in press).
Shih YY, Li G, Muir ER, De La Garza BH, Kiel JW, and Duong TQ. "Pharmacological MRI of the retina: blood flow and BOLD responses during nitroprusside infusion." Magn Reson Med [Epub ahead of print].
De La Garza BH, Muir ER, Shih YY, and Duong TQ. "3D magnetic resonance microscopy of the ex vivo retina." Magn Reson Med [Epub ahead of print].
Wang, J., Shen, H. P., and Zhu, H.T. "Discussion of Clustering Random Curves Under Spatial Interdependence with Application to Service Accessibility by Jiang and Serban." Technometrics, 2012.
Daoqiang Zhang, Dinggang Shen. "Predicting Future Clinical Changes of MCI Patients Using Longitudinal and Multimodal Biomarkers." Accepted for PLOS One.
Qian Wang, Pew-Thian Yap, Guorong Wu, Dinggang Shen. "Application of Neuroanatomical Features to Tractography Clustering." Accepted for Human Brain Mapping.
Dajiang Zhu,Kaiming Li, Lei Guo, Xi Jiang, Tuo Zhang, Degang Zhang, Hanbo Chen, Fan Deng, Carlos Farao, Changfeng Jin, ChongYaw Wee, Yixuang Yuan, Peili Lv, Yan Yin, Xiaolei Hu, Lian Duan, Xintao Hu, Junwei Han, Lihong Wang, Dinggang Shen, Lloyd Miller, Lingjiang Li, Tianming Liu. "DICCCOL: Dense Individualized and Common Connectivity-based Cortical Landmarks." Accepted for Cerebral Cortex.
I Kabul, SM Pizer, J Rosenman, M Niethammer. "An Optimal Control Approach for Texture Metamorphosis." Computer Graphics Forum 30 (8), 2341-2353.
2011
A. L. Oldenburg, G. Wu, D. Spivak, F. Tsui, A. S. Wolberg and T. H. Fischer. "Imaging and Elastometry of Blood Clots using Magnetomotive Optical Coherence Tomography and Labeled Platelets." IEEE Journal of Selected Topics in Quantum Electronics. In Press 2011
M.R. Scola, T.C. Nichols, H Zhu, M.C. Caughey, E.P. Merricks, R.A. Raymer, P. Margaritis, K.A. High, and C. M. Gallippi. "ARFI Ultrasound Monitoring of Hemorrhage and Hemostasis In Vivo in Canine von Willebrand Disease and Hemophilia." Ultrasound in Medicine and Biology, in press, 2011.
L. Calderon-Garciduenas, R Engle, A. Mora-Tiscareno, M. Styner, G. Gomez-Garza, H.T.Zhu, V.Jewells, R.Torres-Jardon, L.Romero, M.E.Monroy-Acosta, C. Bryant,L.O. Gonzalez-Gonzalez, and H. Medina Cortina. "Exposure to severe urban air pollution influences cognitive outcomes, brain volume and systemic inflammation in clinically healthy children." Brain and Cognition, in press, 2011.
John H. Gilmore, Feng Shi, Sandra Woolson, Rebecca C. Knickmeyer, Sarah J. Short, Weili Lin, Hongtu Zhu, Robert M. Hamer, Martin Styner, Dinggang Shen. "Longitudinal Development of Cortical and Subcortical Gray Matter from Birth to 2 Years." Cerebral Cortex, In Press, 2011.
Altamirano LJ, Fields HL, D'Esposito M, Boettiger CA. "Interaction between family history of alcoholism and Locus of Control in the opioid regulation of impulsive responding under the influence of alcohol." Alcohol Clin Exp Res. 2011 Nov;35(11):1905-14.
Wei Gao, John H Gilmore, Kelly S Giovanello, Jeffery Keith Smith, Dinggang Shen, Hongtu Zhu, and Weili Lin. "Temporal and Spatial Evolution of Brain Network Topology during the First Two Years of Life." PLoS One,6(9): e25278. 2011.
J Caplan, M Niethammer, RM Taylor II, KJ Czymmek. "The power of correlative microscopy: multi-modal, multi-scale, multi-dimensional." Current Opinion in Structural Biology.
Rogers W, Shih YY, De La Garza BH, Harrison JM, Roby J, Duong TQ. "A Low Cost Color Visual Stimulator for fMRI." J Neurosci Meth, 2012, 204:379-82.
Zhu, HT., Kong, L, Li, R., Styner, M., Gerig, G, Lin, W and Gilmore, J.H. "FADTTS: Functional Analysis of Diffusion Tensor Tract Statistics." NeuroImage, 56, 1412-1425, 2011.
Skup, M., Zhu, HT., Wang, YP., Giovanello, K.S., Lin, J.A. Shen, D.G., Shi, F., Wang, J.P., Gao, W., Lin, W., Fan, Y., Zhang, H. and ADNI. "Sex Differences in Grey Matter Atrophy Patterns Among AD and aMCI patients: Results from ADNI." NeuroImage, 56, 890-906, 2011.
Mark Walterfang, Jeffrey Chee Leong Looi, Martin Styner, Ruth H Walker, Adrian Danek, Marc Niethammer, Andrew Evans, Katya Kotschet, Guilherme R Rodrigues, Andrew Hughes, Dennis Velakoulis. "Shape alterations in the striatum in chorea-acanthocytosis." Psychiatry Research: Neuroimaging 192 (1), 29-36.
Chao WH, Lin SH, Shih YY, Chen YY, Lo YC, Lin SH, Tsang S, Wu R, and Jaw FS. "Correction of inhomogeneous magnetic resonance images using multiscale retinex for segmentation accuracy improvement." Biomed Signal Proces 2012, 7(2):129–40.
Danielle F Pace, Andinet Enquobahrie, Hua Yang, Stephen R Aylward, Marc Niethammer. "Deformable image registration of sliding organs using anisotropic diffusive regularization." Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium; 2011, 407-413.
Joohwi Lee, Cindy Ehlers, Fulton Crews, Marc Niethammer, Francois Budin, Beatriz Paniagua, Kathy Sulik, Josephine Johns, Martin Styner, Ipek Oguz. "Automatic cortical thickness analysis on rodent brain." Proceedings-Society of Photo-Optical Instrumentation Engineers. 2011; volume 7962.
W Li, L Ibanez, A Gelas, BTT Yeo, M Niethammer, NC Andreasen, VA Magnotta. "An automated pipeline for cortical surface generation and registration of the cerebral cortex." Proceedings of SPIE 7962, 796229.
Jeffrey Chee Leong Looi, Mark Walterfang, Martin Styner, Marc Niethammer, Leif Anders Svensson, Olof Lindberg, Per Östberg, Lisa Botes, Eva Örndahl, Phyllis Chua, Dennis Velakoulis, Lars-Olof Wahlund. "Shape analysis of the neostriatum in subtypes of frontotemporal lobar degeneration: Neuroanatomically significant regional morphologic change." Psychiatry Research: Neuroimaging. 2011; 191:2, 98-111.
Clement Vachet, Heather Cody Hazlett, Marc Niethammer, Ipek Oguz, Joshua Cates, Ross Whitaker, Joseph Piven, Martin Styner. "Group-wise automatic mesh-based analysis of cortical thickness." Proceedings of SPIE, 2011, 7962.
Hongyu An, Andria L. Ford, Katie Vo, Cihat Eldeniz, Rosana Ponisio, Hongtu Zhu,Yimei Li, Yasheng Chen, William J. Powers, Jin-Moo Lee, and Weili Lin. "Early changes of tissue perfusion after tPA in hyperacute ischemic." Stroke,42:65-72, 2011.
M Niethammer, G Hart, D Pace, P Vespa, A Irimia, J Van Horn, S Aylward. "Geometric metamorphosis." Medical Image Computing and Computer-Assisted Intervention–MICCAI 2011, 639-646
M Niethammer, Y Huang, FX Vialard. "Geodesic regression for image time-series." Medical Image Computing and Computer-Assisted Intervention–MICCAI 2011, 655-662.
Zhu, HT., Ibrahim JG, Tang NS. "Bayesian influence approach: a geometric approach." Biometrika, 98, 307-323, 2011.
Zhu, HT, Ibrahim JG., Cho HS, and Tang, N.S.. "Bayesian case-deletion measures for statistical models with missing Data." Journal of Computational and Graphical Statistics, in press, 2011.
Ibrahim, J. G., Zhu, H.T., Garcia, R. I., Guo, R.X. "Fixed and random effects selection for generalized mixed effects models." Biometrics, 67, 495-503, 2011.
Ibrahim, J. G., Zhu, H.T., Tang, N. S. "Bayesian local influence for survival models (with discussion)." Lifetime Data Analysis, 17, 43-70, 2011.
Ibrahim, J. G., Zhu, H.T., Tang, N. S. "Rejoinder to comments on Bayesian local influence for survival models." Lifetime Data Analysis, 17, 76-79, 2011.
Shi, Y. Short, S.J., Knickmeyer, R. C., Wang, J. P., Coe, C. L., Gilmore, H. J., Zhu, H.T., and Styner, M. A. "Diffusion Tensor Imaging Based Characterization of Neurodevelopment in Primates." Cerebral Cortex, in press, 2011.
Chen, Y.S, An, H.Y., Zhu, HT, Shen, D.G., Gilmore, J.H. and Lin, W. L. "Longitudinal regression analysis of spatial-temporal growth patterns of geometrical diffusion measures in early postnatal population with diffusion tensor imaging." NeuroImage, 58, 993-1005, 2011.
P Paniagua, B., Cevidanes, L., Walker, D., Zhu, H., Guo, RX., Styner, M. "Clinical application of SPHARM-PDM to qualify temporomandibular joint steoarthritis." Computerized Medical Imaging and Graphics, 35, 345-352, 2011.
Paniagua, B., Cevidanes, L., Zhu, H.T., Styner, M. "Surgical Outcome Quantification using SPHARM-PDM Toolbox in orthognathic surgery." International Journal of Computer Assisted Radiology and Surgery, 6, 617-626, 2011.
Chow, SM., Tang, NS, Yuan, Y., Song, X.Y., and Zhu HT. "Semiparametric nonlinear dynamic latent variable models." British Journal of Mathematical and Statistical Psychology, 64, 69-10, 2011.
O'Neill, S. S., Gordon, C.J., Guo, RX, Zhu, HT., McCudden, C.R. "Multivariate analysis of clinical, demographic, and laboratory data for classification of patients with disorders of calcium homeostasis." American Journal of Clinical Pathology,135:100-107, 2011.
L. Calderon-Garciduenas, M. Kavanaugh, M. Block, A. D'Angiulli, R Delgado-Chavez, R. Torres-Jardon, A. Gonzalez-Maciel, R. Reynoso-Robles, N. Osnaya, R. Villarreal-Calderon, R. Guo, Z. Hua, H. Zhu, G. Perry, Philippe Diaz. "Neuroinflammation, Alzheimer's-associated pathology and down-regulation of the prion-related protein in air pollution exposed children and young adults." Journal of Alzheimer Disease, in press, 2011.
Ying Yuan, Hongtu Zhu, Weili Lin, J. S. Marron . "Local Polynomial Regression for Symmetric Positive Definite Matrices." JRSSB. Supplement Document [pdf]; 2011.
Shi, XY, Zhu, HT, Ibrahim JG, F. Liang, Styner M. "Intrinsic regression models for median representation of subcortical structures." Journal of American Statistical Association, in press, 2011.
Guo, RX., Zhu, HT., Chow, SM., Ibrahim, JG. "Bayesian Lasso for semiparametric structural equation models using spline." Biometrics, 2011.
Shi, XY, Ibrahim JG, Styner M., Yimei Li, and Zhu, HT. "Two-stage adjusted exponential tilted empirical likelihood for neuroimaging data." Annals of Applied Statistics, 5, 1132-1158, 2011.
R. Villarreal-Calderon, R. Torres-Jardon, J. Palacios-Moreno, N. Osnaya, B. Perez-Guille, R. R Maronpot, W. Reed, H. Zhu, L. C. Garciduenas. "Urban air pollution targets the dorsal vagal complex and dark chocolate offers neuroprotection." International Journal of Toxicology , in press, 2011.