Acquisition software is instrument specific.
Analysis software is at the discretion of the user.
Also we have posted some instruction for using FlowJo 7.6.3 with the Collector’s edition files here:
http://www.cytekdev.com/kb/questions/42/Setting+up+FlowJo+7.6.2+%28and+above%29+to+analyse+samples+acquired+with+a+Cytek+upgraded+analog+cytometer