Downloads

The PGC has made the full results from all published PGC studies available for download. The results files are available below along with the LD pruned version suitable for polygenic profile scoring.

These data are provided "as is", and without warranty, for scientific and educational use only. If you download these data, you acknowledge that these data will be used only for non-commercial research purposes; that the investigator is in compliance with all applicable state, local, and federal laws or regulations and institutional policies regarding human subjects and genetics research; that secondary distribution of the data without registration by secondary parties is prohibited and that the investigator will cite the appropriate PGC publication in any communications or publications arising directly or indirectly from these data.

Visualization Tools

PGC members have built tools with which to see PGC results in genomic context: ricopili (thanks to Stephan Ripke and Brett Thomas) and LdOOKUP (thanks to Shaun Purcell).

PGC Downloads

DisorderFileMD5 Checksum
ADHD pgc.adhd.2012-10.zip e12fdd6d5722071edcfa6f30f8395292
AUT PGC.ASD.euro.all.25Mar2015.txt.gz 06b2187e80da32c11300aedb185406cb
BIP pgc.bip.2012-04.zip a675a65c7ff3eb824f90910e8ffc0fdd
Cross-disorder Full
ADHD subset
AUT subset
BIP subset
MDD subset
SCZ subset
Genetic profile scoring 
pgc.cross.full.2013-03.zip
pgc.cross.add.zip
pgc.cross.aut.zip
pgc.cross.bip.zip
pgc.cross.mdd.zip
pgc.cross.scz.zip
pgc.cross.scoring.5files.zip 
a3c30e83b96d7f035bfa7a20c715a53b
527061d9a71e51ed6487946178298031
88f10ed65b002663ee474d11db15c9ef
bdd66812f9c0512f6e2f1e0571f42102
221f3fb404e41a5ccd4e0df0559cb88f
77faff697e9dd822bf55fb096321befe
7b93be642044eaf22f1bab81a1fe24a0
MDD pgc.mdd.2012-04.zip 895b82d43e11c5e915c34cab5a5e3335
SCZ1
Sweden+SCZ1
pgc.scz.2012-04.zip
scz.swe.pgc1.2013-11b.zip
a12136ad6c54d450793c63e30640b1a4
c1816b9dffdbaca0d7fdbde8580c1f77
PsychChip content
GWAS/exome backbone
PGC custom content

PsychChip_15048346_B.csv.zip
PsychChip_FINAL.score.csv.zip

62953a0e80f2702fb9de25e6cf75e283
6ed7bf499f8e06249c21b332836e22f6

SCZ2
readme
Significant regions
Risk score training set
Full SNP results 
Credible causal SNPs


scz2.readme.pdf
scz2.regions.zip
scz2.prs.txt.gz
scz2.snp.results.txt.gz
pgc.scz2.credible.SNPs.zip

81bb9c1187f622356bd15c7ff73dd01d
e5f4c6e98dd574354c72bef9c2c4455f 
b67d19b738d61c216667f7ce372182e8
af7b9b521a196ce711d99060426fe01e 
3ec34848def0fc6fd211fa6c1e8c6f88 
BIP1 vs SCZ1 bip1.scz1.ruderfer2014.zip 4e4a5fe8526a2d0a4c9eb42a93f7cb0f

Other GWAS downloads and links

DisorderFileMD5 Checksum

CONVERGE (MDD)

converge_MDD_GWAS_SNPresults.txt.gz

fa9c035f8e237544681534d1dd9d902f

GCAN (anorexia nervosa) GCAN_meta.out.gz 498488738abf77094def6f64ee99e0ba
IGAP (follow the link) International Genomics of Alzheimer’s Project
godot
transcipt heretabililty
local & distant eQTLs 

heritbest_final.xlsx.zip
NTR_eQTL.xlsx.zip
Heritability and genomics of gene expression in peripheral blood
87e8b538f46e2d3229b81d6f6e8cda15
175e3c648c0cc43f06e5bbb2c308169c
TAG
readme
cigs per day
ever smoked
former smoker
age-onset

readme.tag.txt

tag.cpd.tbl.gz
tag.evrsmk.tbl.gz
tag.former.tbl.gz
tag.logonset.tbl.gz
Tobacco and Genetics Consortium
eb79b5d3e99ad29e2414ffb0f81f682d
ee43737cec4f1b184074ce07ea600b85
9216b2742390819b4d5d0e4673926885
a7c3500db3fbcca9d6590bf6d2deba32
44cf8df18e1ada22f67ab914ff54871c
IBD  (follow the link) International Inflammatory Bowel Disease Genetics Consortium
GIANT Consortium (follow the link) GIANT height, weight, obesity, etc. 
RA  (follow the link) Rheumatoid arthritis
CARDIoGRAM (follow the link) Coronary artery disease and myocardial infarction
DIAGRAM (follow the link) DIAbetes Genetics Replication And Meta-analysis Consortium
BP (follow the link) International Consortium for Blood Pressure GWAS
MAGIC (follow the link) Meta-Analyses of Glucose and Insulin-related traits Consortium
GEFOS (follow the link) GEnetic Factors for OSteoporosis Consortium
SSGAC (follow the link) Social Science Genetic Association Consortium, educational attainment
EGG (follow the link) Early Growth Genetics Consortium
Global lipids consortium (follow the link) Lipids, cholesterol (total, HDL, LDL)
GPC (follow the link) Genetics of Personality Consortium