Publications
Publications using Core technology
This video published by the Journal of Visualized Experiments shows how samples may be set up and aliquoted by the Tecan Freedom Evo®, as well as quantified by the Roche Lightcycler® 480 II.
Chugh P, Tamburro K, Dittmer DP (2010). Profiling of Pre-micro RNAs and microRNAs using Quantitative Real-time PCR (qPCR) Arrays. J Vis Exp. 46. http://www.jove.com/index/details.stp?id=2210, doi: 10.3791/2210
Several papers have been published by our lab using this technology:
Pre-micro RNA signatures delineate stages of endothelial cell transformation in Kaposi sarcoma.
O'Hara AJ, Chugh P, Wang L, Netto EM, Luz E, Harrington WJ, Dezube BJ, Damania B, Dittmer DP.
PLoS Pathog. 2009 Apr;5(4):e1000389. Epub 2009 Apr 17.PMID: 19381257 [PubMed - indexed for MEDLINE]Free PMC ArticleFree text
Tumor suppressor microRNAs are underrepresented in primary effusion lymphoma and Kaposi sarcoma.
O'Hara AJ, Wang L, Dezube BJ, Harrington WJ Jr, Damania B, Dittmer DP.
Blood. 2009 Jun 4;113(23):5938-41. Epub 2009 Feb 27.PMID: 19252139 [PubMed - indexed for MEDLINE]Free PMC ArticleFree text
O'Hara AJ, Vahrson W, Dittmer DP.
Blood. 2008 Feb 15;111(4):2347-53. Epub 2007 Dec 13.PMID: 18079361 [PubMed - indexed for MEDLINE]Free PMC ArticleFree text
The following journal articles also relate to our lab and the processes utilized by the core:
| 1. | Efficiency clustering for low-density microarrays and its application to QPCR. |
| Lock EF, Ziemiecke R, Marron J, Dittmer DP. | |
| BMC Bioinformatics. 2010 Jul 20;11:386. | |
| PMID: 20646303 [PubMed - indexed for MEDLINE] Free PMC Article Free text | |
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| 2. | Genome-wide real-time PCR for West Nile virus reduces the false-negative rate and facilitates new strain discovery. |
| Papin JF, Vahrson W, Larson L, Dittmer DP. | |
| J Virol Methods. 2010 Oct;169(1):103-11. Epub 2010 Jul 14. | |
| PMID: 20637239 [PubMed - in process] | |
| Related citations |
| 3. | Molecular and clinical assessment in the treatment of AIDS Kaposi sarcoma with valproic Acid. |
| Lechowicz M, Dittmer DP, Lee JY, Krown SE, Wachsman W, Aboulafia D, Dezube BJ, Ratner L, Said J, Ambinder RF. | |
| Clin Infect Dis. 2009 Dec 15;49(12):1946-9. | |
| PMID: 19911999 [PubMed - indexed for MEDLINE] | |
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| 4. | Maribavir inhibits epstein-barr virus transcription in addition to viral DNA replication. |
| Wang FZ, Roy D, Gershburg E, Whitehurst CB, Dittmer DP, Pagano JS. | |
| J Virol. 2009 Dec;83(23):12108-17. Epub 2009 Sep 16. | |
| PMID: 19759127 [PubMed - indexed for MEDLINE] Free PMC Article Free text | |
| Related citations |
| 5. | General and target-specific RNA binding properties of Epstein-Barr virus SM posttranscriptional regulatory protein. |
| Han Z, Verma D, Hilscher C, Dittmer DP, Swaminathan S. | |
| J Virol. 2009 Nov;83(22):11635-44. Epub 2009 Sep 2. | |
| PMID: 19726500 [PubMed - indexed for MEDLINE] Free PMC Article Free text | |
| Related citations |
| 6. | Disruption of LANA in rhesus rhadinovirus generates a highly lytic recombinant virus. |
| Wen KW, Dittmer DP, Damania B. | |
| J Virol. 2009 Oct;83(19):9786-802. Epub 2009 Jul 8. | |
| PMID: 19587030 [PubMed - indexed for MEDLINE] Free PMC Article Free text | |
| Related citations |
| 7. | Multiple pathways for Epstein-Barr virus episome loss from nasopharyngeal carcinoma. |
| Dittmer DP, Hilscher CJ, Gulley ML, Yang EV, Chen M, Glaser R. | |
| Int J Cancer. 2008 Nov 1;123(9):2105-12. | |
| PMID: 18688856 [PubMed - indexed for MEDLINE] Free PMC Article Free text | |
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| 8. | EBV microRNAs in primary lymphomas and targeting of CXCL-11 by ebv-mir-BHRF1-3. |
| Xia T, O'Hara A, Araujo I, Barreto J, Carvalho E, Sapucaia JB, Ramos JC, Luz E, Pedroso C, Manrique M, Toomey NL, Brites C, Dittmer DP, Harrington WJ Jr. | |
| Cancer Res. 2008 Mar 1;68(5):1436-42. | |
| PMID: 18316607 [PubMed - indexed for MEDLINE] Free PMC Article Free text | |
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| 9. | Development of a fluorescence-based assay to screen antiviral drugs against Kaposi's sarcoma associated herpesvirus. |
| Nun TK, Kroll DJ, Oberlies NH, Soejarto DD, Case RJ, Piskaut P, Matainaho T, Hilscher C, Wang L, Dittmer DP, Gao SJ, Damania B. | |
| Mol Cancer Ther. 2007 Aug;6(8):2360-70. | |
| PMID: 17699731 [PubMed - indexed for MEDLINE] Free Article | |
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| 10. | In vivo-restricted and reversible malignancy induced by human herpesvirus-8 KSHV: a cell and animal model of virally induced Kaposi's sarcoma. |
| Mutlu AD, Cavallin LE, Vincent L, Chiozzini C, Eroles P, Duran EM, Asgari Z, Hooper AT, La Perle KM, Hilsher C, Gao SJ, Dittmer DP, Rafii S, Mesri EA. | |
| Cancer Cell. 2007 Mar;11(3):245-58. Erratum in: Cancer Cell. 2007 May;11(5):471. | |
| PMID: 17349582 [PubMed - indexed for MEDLINE] Free PMC Article Free text | |
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| 11. | Functional p53 signaling in Kaposi's sarcoma-associated herpesvirus lymphomas: implications for therapy. |
| Petre CE, Sin SH, Dittmer DP. | |
| J Virol. 2007 Feb;81(4):1912-22. Epub 2006 Nov 22. | |
| PMID: 17121789 [PubMed - indexed for MEDLINE] Free PMC Article Free text | |
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| 12. | Reactivation of Kaposi's sarcoma-associated herpesvirus by natural products from Kaposi's sarcoma endemic regions. |
| Whitby D, Marshall VA, Bagni RK, Miley WJ, McCloud TG, Hines-Boykin R, Goedert JJ, Conde BA, Nagashima K, Mikovits J, Dittmer DP, Newman DJ. | |
| Int J Cancer. 2007 Jan 15;120(2):321-8. | |
| PMID: 17066452 [PubMed - indexed for MEDLINE] Free PMC Article Free text | |
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| 13. | Faster quantitative real-time PCR protocols may lose sensitivity and show increased variability. |
| Hilscher C, Vahrson W, Dittmer DP. | |
| Nucleic Acids Res. 2005 Nov 27;33(21):e182. | |
| PMID: 16314296 [PubMed - indexed for MEDLINE] Free PMC Article Free text | |
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| 14. | Role of Notch signal transduction in Kaposi's sarcoma-associated herpesvirus gene expression. |
| Chang H, Dittmer DP, Shin YC, Hong Y, Jung JU. | |
| J Virol. 2005 Nov;79(22):14371-82. Erratum in: J Virol. 2006 Apr;80(8):4203. Chul, Shin-Young [corrected to Shin, Young C]. | |
| PMID: 16254371 [PubMed - indexed for MEDLINE] Free PMC Article Free text | |
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| 15. | Whole-genome transcription profiling of rhesus monkey rhadinovirus. |
| Dittmer DP, Gonzalez CM, Vahrson W, DeWire SM, Hines-Boykin R, Damania B. | |
| J Virol. 2005 Jul;79(13):8637-50. | |
| PMID: 15956606 [PubMed - indexed for MEDLINE] Free PMC Article Free text | |
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| 16. | Real-time quantitative PCR analysis of viral transcription. |
| Papin J, Vahrson W, Hines-Boykin R, Dittmer DP. | |
| Methods Mol Biol. 2005;292:449-80. | |
| PMID: 15507725 [PubMed - indexed for MEDLINE] | |
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| 17. | SYBR green-based real-time quantitative PCR assay for detection of West Nile Virus circumvents false-negative results due to strain variability. |
| Papin JF, Vahrson W, Dittmer DP. | |
| J Clin Microbiol. 2004 Apr;42(4):1511-8. | |
| PMID: 15070997 [PubMed - indexed for MEDLINE] Free PMC Article Free text | |
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| 18. | Transcription profile of Kaposi's sarcoma-associated herpesvirus in primary Kaposi's sarcoma lesions as determined by real-time PCR arrays. |
| Dittmer DP. | |
| Cancer Res. 2003 May 1;63(9):2010-5. | |
| PMID: 12727810 [PubMed - indexed for MEDLINE] Free Article | |
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| 19. | Charting latency transcripts in Kaposi's sarcoma-associated herpesvirus by whole-genome real-time quantitative PCR. |
| Fakhari FD, Dittmer DP. | |
| J Virol. 2002 Jun;76(12):6213-23. | |
| PMID: 12021355 [PubMed - indexed for MEDLINE] Free PMC Article Free text | |
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