HAMMER brain warping results

HAMMER results:

A new approach is presented for elastic registration of medical images, and is applied to magnetic resonance images of the brain. Experimental results demonstrate very high accuracy in superposition of images from different subjects. There are two major novelties in the proposed algorithm. First, it uses an attribute vector, i.e. a set of geometric moment invariants (GMIs) that are defined on each voxel in an image and are calculated from the tissue maps, to reflect the underlying anatomy at different scales. The attribute vector, if rich enough, can distinguish between different parts of an image, which helps establish anatomical correspondences in the deformation procedure; it also helps reduce local minima, by reducing ambiguity in potential matches. This is a fundamental deviation of our method, referred to as HAMMER, from other volumetric deformation methods, which are typically based on maximizing image similarity. Second, in order to avoid being trapped by local minima, i.e. suboptimal poor matches, HAMMER uses a successive approximation of the energy function being optimized by lower dimensional smooth energy functions, which are constructed to have significantly fewer local minima. This is achieved by hierarchically selecting the driving features that have distinct attribute vectors, thus drastically reducing ambiguity in finding correspondence. A number of experiments demonstrate that the proposed algorithm results in accurate superposition of image data from individuals with significant anatomical differences.

Demonstrations of using HAMMER for brain warping are provided in the next. For the details of the method, please refer to our papers in TMI and Neuroimage .
  1. HAMMER forums, email list, and support pages hosted by NITRC (Nov 2007)
  2. 2006 Best Paper Award for HAMMER registration paper, from IEEE Signal Processing Society (Jan 2007)
  3. Click here to download HAMMER software (March 2005)
  4. Generalized HAMMER algorithm, for registration of other images such as CT pelvis images and MR whole-body mouse images (2004)
  5. 4D HAMMER, for accurately measuring longitudinal brain changes (March 2004)
  6. Label brain structures by HAMMER (March 2004)
  7. Average image of 20 cardiac individuals, normalized by HAMMER (August 2003)
  8. Average image of 158 individual subjects, normalized by HAMMER (May 2003)
  9. Fully automatic skull-stripping by HAMMER (May 2002)
  10. Warping DTI FA images by HAMMER (Mar 2002)
  11. HAMMER for Head Warping and Skull Stripping (Nov 2001)
  12. Warping and Registration of Brain Images by HAMMER (July 2001)


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