######################################## #Summary statistics for GWAS analysis of 215 DTI parameters (110 mean parameters + 105 PC parameters, see below) #Bingxin Zhao (bingxin@unc.edu) ######################################## Sample size n=33,292 (UKB British cohort) Number of reported SNPs p~9,023,710 (Chromosomes 1-22) Version: July15, 2020 ######################################## GWAS was performed by fastGWA: https://cnsgenomics.com/software/gcta/index.html#fastGWA/ Each file contains the following columns: #CHR Chromosome #SNP SNP identifier #POS Physical position (base-pair) #A1 Tested allele (minor allele by default) #A2 Null allele #N Per-SNP Sample Size #AF1 Frequency of A1 #BETA SNP effect #SE SNP SE #Z SNP Z-score #P P-value from fastGWA ######################################## 110 DTI Mean parameters for 21 WM tracts and the whole brain average (22*5=110) ############### # WM tracts (21) + whole brain average (22 in total) ID Full Name ACR Anterior corona radiata ALIC Anterior limb of internal capsule BCC Body of corpus callosum CGC Cingulum (cingulate gyrus) CGH Cingulum (hippocampus) CST Corticospinal tract EC External capsule FX Fornix (column and body of fornix) FXST Fornix (cres) / Stria terminalis (can not be resolved with current resolution) GCC Genu of corpus callosum IFO Inferior fronto-occipital fasciculus PCR Posterior corona radiata PLIC Posterior limb of internal capsule PTR Posterior thalamic radiation (include optic radiation) RLIC Retrolenticular part of internal capsule SCC Splenium of corpus callosum SCR Superior corona radiata SFO Superior fronto-occipital fasciculus (could be a part of anterior internal capsule) SLF Superior longitudinal fasciculus SS Sagittal stratum (include inferior longitidinal fasciculus and inferior fronto-occipital fasciculus) UNC Uncinate fasciculus Average Whole brain average across all tracts ################ # DTI parameters (5) DTI parameter Full name Description FA fractional anisotropy a summary measure of WM integrity MD mean diusivities magnitude of absolute directionality AD axial diusivities eigenvalue of the principal diusion direction RD radial diusivities average of the eigenvalues of the two secondary directions MO mode of anisotropy third moment of the tensor ######################################## 105 DTI PC parameters (21*5=105) For the 21 WM tracts listed above, we also perform analysis for the top five principle components (PCs) of the FA measure. ######################################## The detailed list of these 215 files can be found in the DTI.csv file while downloading the GWAS summary statistics via wget. ######################################## Reference: Zhao et al (2020) Common genetic variation influencing human white matter microstructure. https://doi.org/10.1101/2020.05.23.112409 ######################################## This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License (https://creativecommons.org/licenses/by-nc-sa/4.0/) Particularly, you agree not to attempt to identify individual participants and not to use these data for projects that may lead to stigmatizing individuals or groups of individuals. When reporting results of research that utilizes these data, we request that you cite the original publication. Commercial use: If you want to use the GWAS sumstats commercially, you must first get our permission to do so. Please send an e-mail to Hongtu Zhu (htzhu@email.unc.edu).