{"id":23938,"date":"2022-10-07T12:59:47","date_gmt":"2022-10-07T16:59:47","guid":{"rendered":"https:\/\/www.med.unc.edu\/biochem\/?p=23938"},"modified":"2022-10-07T12:59:47","modified_gmt":"2022-10-07T16:59:47","slug":"venkat-r-chirasani-publishes-in-current-research-in-chemical-biology","status":"publish","type":"post","link":"https:\/\/www.med.unc.edu\/biochem\/news\/venkat-r-chirasani-publishes-in-current-research-in-chemical-biology\/","title":{"rendered":"Venkat R Chirasani publishes in “Current Research in Chemical Biology”"},"content":{"rendered":"

Congratulations to first author Venkat R Chirasani<\/strong> for his research “Whole proteome mapping of compound-protein interactions” published in Current Research in Chemical Biology.<\/p>\n

\n

Abstract<\/h2>\n

\"WholeOff-target binding is one of the primary causes of toxic side effects of drugs in clinical development, resulting in failures of clinical trials. While off-target drug binding is a known phenomenon, experimental identification of the undesired protein binders can be prohibitively expensive due to the large pool of possible biological targets. Here, we propose a new strategy combining chemical similarity principle and deep learning to enable proteome-wide mapping of compound-protein interactions. We have developed a pipeline to identify the targets of bioactive molecules by matching them with chemically similar annotated \u201cbait\u201d compounds and ranking them with deep learning. We have constructed a user-friendly web server for\u00a0dr<\/u>ug-target\u00a0i<\/u>dentif<\/u>icati<\/u>on based on chemical similarity (DRIFT) to perform searches across annotated bioactive compound datasets, thus enabling high-throughput, multi-ligand target identification, as well as chemical fragmentation of target-binding moieties.<\/p>\n

Title: Whole proteome mapping of compound-protein interactions<\/strong><\/p>\n

First author: Venkat R Chirasani, Research Associate<\/span><\/p>\n

This article was accepted on September 9, 2022.<\/p>\n

Link to publication https:\/\/doi.org\/10.1016\/j.crchbi.2022.100035<\/p>\n","protected":false},"excerpt":{"rendered":"

Congratulations to first author Venkat R Chirasani for his research “Whole proteome mapping of compound-protein interactions” published in Current Research in Chemical Biology.<\/p>\n","protected":false},"author":41619,"featured_media":23939,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"layout":"","cellInformation":"","apiCallInformation":"","footnotes":"","_links_to":"","_links_to_target":""},"categories":[2],"tags":[378,179],"class_list":["post-23938","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-news","tag-news_2022","tag-news_postdoc-scholars","odd"],"acf":[],"yoast_head":"\nVenkat R Chirasani publishes in "Current Research in Chemical Biology" | Biochemistry and Biophysics<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" 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