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Multi-atlas based Segmentation Editing Tool (SegEditing)

Software Title

Multi-atlas based Segmentation Editing Tool (SegEditing)

Description

SegEditing is a segmentation editing tool using existing labels as references. It is useful when you would like to correct large errors with a few user interactions such as dots or rough scribbles using one or multiple reference labels of the target object. This toolbox includes an image viewer, graphical user interface, and semi-automatic algorithms for segmentation. The tool can support the following functions: Open medical images with various formats (such as mhd, hdr, nii), control intensity range in visualization, zoom in/out, show segmentation results, load and save user interactions and segmentation results, and so on.

Download

http://www.nitrc.org/projects/segediting

References

  1. Sang Hyun Park, Yaozong Gao, and Dinggang Shen, “Multi-atlas based segmentation editing with interaction-guided patch selection and label fusion,” Transactions on Biomedical Engineering, In press.
  2. Sang Hyun Park, Yaozong Gao, and Dinggang Shen, ” Multi-atlas based Segmentation Editing with Interaction-Guided Constraints,” MICCAI, 2015.