Publication List

2013

  1. "Estimating the 4D Respiratory Lung Motion by Spatiotemporal Registration and Super-Resolution Image Reconstruction", Medical Physics 40(3):031710, 2013. [Guorong Wu, Qian Wang, Jun Lian, and Dinggang Shen]
  2. "S-HAMMER: Hierarchical Attribute-Guided, Symmetric Diffeomorphic Registration for MR Brain Images", accepted for Human Brain Mapping, 2013. [Guorong Wu, Minjeong Kim, Qian Wang, and Dinggang Shen]
  3. “Brain-Cloud: A Generalized and Flexible Registration Framework for Brain MR Images”, MICCAI Workshop on Medical Imaging and Augmented Reality (MIAR 2013), Nagoya, Japan, Sep. 22, 2013. [Minjeong Kim, Guorong Wu, Qian Wang, Dinggang Shen]
  4. "Sparse Multimodal Manifold-regularized Transfer Learning for MCI Conversion Prediction", MICCAI Workshop on Machine Learning in Medical Imaging (MLMI 2013), Nagoya, Japan, Sep. 22, 2013. [Bo Cheng, Daoqiang Zhang, Biao Jie, Dinggang Shen]
  5. "Identification of Alzheimer's Disease Using Incomplete Multimodal Dataset via Matrix Shrinkage and Completion", MICCAI Workshop on Machine Learning in Medical Imaging (MLMI 2013), Nagoya, Japan, Sep. 22, 2013. [Kim-Han Thung, Chong-Yaw Wee, Pew-Thian Yap and Dinggang Shen]
  6. “Multi-task Sparse Classifier for Diagnosis of MCI Conversion to AD with Longitudinal MR images “, MICCAI Workshop on Machine Learning in Medical Imaging (MLMI 2013), Nagoya, Japan, Sep. 22, 2013. [Manhua Liu, Heung-Il Suk, Dinggang Shen]
  7. "Temporally Dynamic Resting-State Functional Connectivity Networks for Early MCI Identification", MICCAI Workshop on Machine Learning in Medical Imaging (MLMI 2013), Nagoya, Japan, Sep. 22, 2013. [Chong-Yaw Wee, Sen Yang, Pew-Thian Yap, and Dinggang Shen]
  8. “Integrating Multiple Network Properties for MCI Identification”, MICCAI Workshop on Machine Learning in Medical Imaging (MLMI 2013), Nagoya, Japan, Sep. 22, 2013. [Biao Jie, Daoqiang Zhang, Chong-Yaw Wee, Heung-Il Suk, and Dinggang Shen]
  9. “Unsupervised Deep Learning for Hippocampus Segmentation in 7.0 Tesla MR Images “, MICCAI Workshop on Machine Learning in Medical Imaging (MLMI 2013), Nagoya, Japan, Sep. 22, 2013. [Minjeong Kim, Guorong Wu, Dinggang Shen]
  10. "Discriminative Group Sparse Representation for Mild Cognitive Impairment Classification", MICCAI Workshop on Machine Learning in Medical Imaging (MLMI 2013), Nagoya, Japan, Sep. 22, 2013. [Heung-Il Suk, Chong-Yaw Wee, and Dinggang Shen]
  11. "Deep Learning-based Feature Representation for AD/MCI Classification", MICCAI 2013, Nagoya, Japan, Sep. 22-26, 2013. [Heung-Il Suk, and Dinggang Shen]
  12. "Inter-Modality Relationship Constrained Multi-Task Feature Selection for AD/MCI Classification", MICCAI 2013, Nagoya, Japan, Sep. 22-26, 2013. [Feng Liu, Chong-Yaw Wee, Huafu Chen, Dinggang Shen]
  13. "High-order Graph Matching based Feature Selection for Alzheimer's Disease Identification", MICCAI 2013, Nagoya, Japan, Sep. 22-26, 2013. [Feng Liu, Heung-Il Suk, Chong-Yaw Wee, Huafu Chen, Dinggang Shen]
  14. "Multi-Atlas Based Simultaneous Labeling of Longitudinal Dynamic Cortical Surfaces in Infants", MICCAI 2013, Nagoya, Japan, Sep. 22-26, 2013. [Gang Li, Li Wang, Feng Shi, Weili Lin, Dinggang Shen]
  15. "Automated segmentation of CBCT image using spiral CT atlases and convex optimization", MICCAI 2013, Nagoya, Japan, Sep. 22-26, 2013. [Li Wang, Ken Chung Chen, Feng Shi, Shu Liao, Gang Li, Yaozong Gao, Steve GF Shen, Jin Yan, Philip K.M. Lee, Ben Chow, Nancy X. Liu, James J. Xia, Dinggang Shen]
  16. "Integration of Sparse Multi-modality Representation and Geometrical Constraint for Isointense Infant Brain Segmentation", MICCAI 2013, Nagoya, Japan, Sep. 22-26, 2013. [Li Wang, Feng Shi, Gang Li, John H. Gilmore, Weili Lin, Dinggang Shen]
  17. "Manifold Regularized Multi-task Feature Selection for Multi-modality Classification in Alzheimer’s Disease", MICCAI 2013, Nagoya, Japan, Sep. 22-26, 2013. [Biao Jie, Daoqiang Zhang, Bo Cheng, Dinggang Shen]
  18. "Harnessing Group-Sparsity Regularization for Resolution Enhancement of Lung 4D-CT", MICCAI 2013, Nagoya, Japan, Sep. 22-26, 2013. [Arnav Bhavsar, Guorong Wu, Dinggang Shen]
  19. "Representation Learning: A Unified Deep Learning Framework for Automatic Prostate MR Segmentation", MICCAI 2013, Nagoya, Japan, Sep. 22-26, 2013. [Shu Liao, Yaozong Gao, and Dinggang Shen]
  20. "Unsupervised Deep Feature Learning for Deformable Image Registration of MR Brains", MICCAI 2013, Nagoya, Japan, Sep. 22-26, 2013. [Guorong Wu, Qian Wang, Minjeong Kim, Shu Liao, Yaozong Gao, and Dinggang Shen]
  21. "Minimizing Joint Risk of Mislabeling for Iterative Patch-based Label Fusion", MICCAI 2013, Nagoya, Japan, Sep. 22-26, 2013. [Guorong Wu, Feiping Nie, Qian Wang, Shu Liao, Daoqiang Zhang, and Dinggang Shen]
  22. "Incremental Learning with Selective Memory (ILSM): Towards Fast Prostate Localization for Image Guided Radiotherapy", MICCAI 2013, Nagoya, Japan, Sep. 22-26, 2013. [Yaozong Gao, Yiqiang Zhan, Dinggang Shen]
  23. "Identification of MCI Using Optimal Sparse MAR Modeled Effective Connectivity Networks", MICCAI 2013, Nagoya, Japan, Sep. 22-26, 2013. [Chong-Yaw Wee, Yang Li, Biao Jie, Zi-wen Peng, and Dinggang Shen]
  24. "Low-Rank Total Variation for Image Super-Resolution", MICCAI 2013, Nagoya, Japan, Sep. 22-26, 2013. [Feng Shi, Jian Cheng, Li Wang, Pew-Thian Yap, and Dinggang Shen]
  25. “Groupwise Registration via Graph Shrinkage on the Image Manifold”, CVPR 2013, June 25-27, 2013, Oregon, USA. [Shihui Ying, Guorong Wu, Qian Wang, Dinggang Shen]
  26. “Prostate Segmentation in CT Images via Spatial-Constrained Transductive Lasso (SCOTO)”, CVPR 2013, June 25-27, 2013, Oregon, USA. [Yinghuan Shi, Shu Liao, Yaozong Gao, Daoqiang Zhang, Yang Gao, and Dinggang Shen]
  27. “Discriminative Brain Effective Connectivity Analysis for Alzheimer’s Disease: A Kernel Learning Approach upon Sparse Gaussian Bayesian Network”, CVPR 2013, June 25-27, 2013, Oregon, USA. [Luping Zhou, Lei Wang, Lingqiao Liu, Philip Ogunbona, Dinggang Shen]
  28. "Joint Learning of Appearance and Transformation for Predicting Brain MR Image Registration", IPMI 2013, Asilomar, California, USA, Jun. 29 - Jul. 3, 2013. [Qian Wang, Minjeong Kim, Guorong Wu, Dinggang Shen].
  29. "Automatic Prostate MR Image Segmentation with Sparse Label Propagation and Domain-Specific Manifold Regularization", IPMI 2013, Asilomar, California, USA, Jun. 29 - Jul. 3, 2013. [Shu Liao, Yaozong Gao, Yinghuan Shi, Ambereen Yousuf, Ibrahim Karademir, Aytekin Oto, Dinggang Shen]
  30. "Inter-group Image Registration by Hierarchical Graph Shrinkage", ISBI 2013, San Francisco, California, USA, Apr. 7-11, 2013. [Shihui Ying, Guorong Wu, Shu Liao, Dinggang Shen]
  31. "MR Prostate Segmentation via Distributed Discriminative Dictionary (DDD) Learning", ISBI 2013, San Francisco, California, USA, Apr. 7-11, 2013. [Yanrong Guo, Yiqiang Zhan, Yaozong Gao, Jianguo Jiang, Dinggang Shen]
  32. "Kernel-based Multi-task Joint Sparse Classification for Alzheimer's Disease", ISBI 2013, San Francisco, California, USA, Apr. 7-11, 2013. [Yaping Wang, Manhua Liu, Lei Guo, Dinggang Shen]
  33. "Measuring Longitudinally Dynamic Cortex Development in Infants by Reconstruction of Consistent Cortical Surfaces", ISBI 2013, San Francisco, California, USA, Apr. 7-11, 2013. [Gang Li, Jingxin Nie, Li Wang, Feng Shi, John H. Gilmore, Weili Lin, Dinggang Shen]
  34. "Patch-driven Neonatal Brain MRI Segmentation with Sparse Representation and Level Sets", ISBI 2013, San Francisco, California, USA, Apr. 7-11, 2013. [Li Wang, Feng Shi, Gang Li, Weili Lin, John H. Gilmore, Dinggang Shen]
  35. "Consistent 4D brain extraction of serial brain MR images", SPIE Medical Imaging 2013, Florida, Feb. 2013. [Yaping Wang, Gang Li, Jingxin Nie, Pew-Thian Yap, Lei Guo, Dinggang Shen

2012

  1. Giovanello KS and Schacter DL. "Reduced specificity of hippocampal and posterior ventrolateral prefrontal activity during relational retrieval in normal aging." Journal of Cognitive Neuroscience, 24(1):159-70 2012

  2. Giovanello KS, De Brigard F,  Ford JH, Kaufer DI,  Burke JR, Browndyke JN, and Welsh-Bohmer KA. "Event-related functional magnetic resonance imaging changes during relational retrieval in normal aging and amnestic Mild Cognitive Impairment." Journal of the International Neuropsychological Society 18, 1–12 2012

  3. Skup, M., Zhu, H.T., and Zhang HP. "Multiscale adaptive marginal analysis of longitudinal neuroimaging data with time-varying covariates." Biometrics In press, 2012

  4. Yuan, Y., Zhu, H.T., Styner, M.,  J. H. Gilmore.,  and Marron, J. S. "Varying coefficient model for modeling diffusion tensors along white matter bundles." Annals of Applied Statistics In press, 2012

  5. Li, YM, John Gilmore, JP Wang, M. Styner, Weili Lin, and Zhu, HT. "Two-stage spatial adaptive analysis of twin neuroimaging data." IEEE Transactions on Medical Imaging In press, 2012

  6. G. R. Wilkins, O. M. Houghton and A. L. Oldenburg. "Automated Segmentation of Intraretinal Cystoid Fluid in Optical Coherence Tomography." IEEE Transactions on Biomedical Engineering, 54(4):1109-1114, 2012

  7. Yu Zhang, Guorong Wu, Pew-Thian Yap, Qianjin Feng, Jun Lian, Wufan Chen, Dinggang Shen. "Hierarchical Patch-Based Sparse Representation - A new approach for resolution enhancement of 4D-CT lung data." Accepted for IEEE Trans. Medical Imaging 2012

  8. Feng Shi, Li Wang, Yakang Dai, John H Gilmore, Weili Lin, Dinggang Shen. "Pediatric Brain Extraction Using Learning-based Meta-algorithm." Accepted for Neuroimage 2012

  9. Zhen, W., Alcauter, S., Jin, K., Peng, Z., Gao, W. “Graph Theoretical Analysis of Sedation’s Effect on Whole Brain Functional System in School-Aged Children”.  Accepted for Brain Connectivity
  10. Wang, L., Shi, F., Yap, PT., Gilmore, J., Lin, W., Shen, D.  "4D Multi-Modality Tissue Segmentation of Serial Infant Images", accepted for PLOS ONE, 2012
  11. Li, G., Nie, J., Wang, L., Shi, F., Lin, W., Gilmore, J., Shen, D. "Mapping Region-specific Longitudinal Cortical Surface Expansion from Birth to 2 Years Old", accepted for Cerebral Cortex, 2012
  12. Liao, S., Wu, G., Shen, D. "A Statistical Framework for Inter-Group Image Registration", accepted for Neuroinformatics
  13. Yap, PT., Shen, D. "Spatial Transformation of DWI Data Using Non-Negative Sparse Representation", accepted for IEEE Trans. on Medical Imaging, 2012
  14. Wee, CY., Yap, PT., Shen, D. "Prediction of Alzheimer's Disease and Mild Cognitive Impairment Using Baseline Cortical Morphological Abnormality Patterns", accepted for Human Brain Mapping, 2012
  15. Li, Y., Jewells, V., Kim, M., Chen, Y., Moon, A., Armao, D., Troiani, L., Markovic-Plese, S., Lin, W., Shen, D. "Diffusion Tensor Imaging Based Network Analysis Detects Alterations in Neuroconnectivity in Patients with Clinically Early Relapsing Remitting Multiple Sclerosis", accepted for Human Brain Mapping, 2012
  16. Shu, L., Shen, D. "A Feature based Learning Framework for Accurate Prostate Localization in CT Images", accepted for IEEE Trans. On Image Processing, 2012
  17. Giovanello KS and Schacter DL. "Reduced specificity of hippocampal and posterior ventrolateral prefrontal activity during relational retrieval in normal aging." Journal of Cognitive Neuroscience, 24(1):159-70 2012
  18. Giovanello KS, De Brigard F,  Ford JH, Kaufer DI,  Burke JR, Browndyke JN, and Welsh-Bohmer KA. "Event-related functional magnetic resonance imaging changes during relational retrieval in normal aging and amnestic Mild Cognitive Impairment." Journal of the International Neuropsychological Society 18, 1–12 2012
  19. Skup, M., Zhu, H.T., and Zhang HP. "Multiscale adaptive marginal analysis of longitudinal neuroimaging data with time-varying covariates." Biometrics In press, 2012
  20. Yuan, Y., Zhu, H.T., Styner, M.,  J. H. Gilmore.,  and Marron, J. S. "Varying coefficient model for modeling diffusion tensors along white matter bundles." Annals of Applied Statistics In press, 2012
  21. Li, YM, John Gilmore, JP Wang, M. Styner, Weili Lin, and Zhu, HT. "Two-stage spatial adaptive analysis of twin neuroimaging data." IEEE Transactions on Medical Imaging In press, 2012
  22. G. R. Wilkins, O. M. Houghton and A. L. Oldenburg. "Automated Segmentation of Intraretinal Cystoid Fluid in Optical Coherence Tomography." IEEE Transactions on Biomedical Engineering, 54(4):1109-1114, 2012
  23. Yu Zhang, Guorong Wu, Pew-Thian Yap, Qianjin Feng, Jun Lian, Wufan Chen, Dinggang Shen. "Hierarchical Patch-Based Sparse Representation - A new approach for resolution enhancement of 4D-CT lung data." Accepted for IEEE Trans. Medical Imaging 2012
  24. Feng Shi, Li Wang, Yakang Dai, John H Gilmore, Weili Lin, Dinggang Shen. "Pediatric Brain Extraction Using Learning-based Meta-algorithm." Accepted for Neuroimage 2012
  25. Feng Shi, Pew-Thian Yap, Wei Gao, Weili Lin, John H Gilmore, Dinggang Shen. "Altered Structural Connectivity in Neonates at Genetic Risk for Schizophrenia: A Combined Study Using Morphological and White Matter Networks." Accepted for Neuroimage, 2012
  26. Chong-Yaw Wee, Pew-Thian Yap, Kevin Denny, Jeffrey N. Browndyke, Guy G. Potter, Kathleen A. Welsh-Bohmer, Lihong Wang, Dinggang Shen. "Resting-State Multi-Spectrum Functional Connectivity Networks for Identification of MCI Patients." Accepted for PLoS ONE, 2012
  27. Liao Shu, Dinggang Shen. "A Feature based Learning Framework for Accurate Prostate Localization in CT Images." Accepted for IEEE Trans. on Image Processing, 2012
  28. Lai HY, Liao LD, Lin CT, Chen YY, Hsu JH, Chen HF, Tsang S, Chang JY, Shih YY. "Design, simulation and experimental validation of a novel flexible neural probe for deep brain stimulation and multichannel recording." J Neural Eng (in press)
  29. Shih YY, Chiang YC, Shyu BC, Jaw FS, Duong TQ and Chang C. "Endogenous opioid-dopamine neurotransmission underlie negative CBV fMRI signals." Exp Neurol, 2012, 234:2, 382-88.
  30. Hongjun Jia, Guorong Wu, Qian Wang, Yaping Wang, Minjeong Kim, and Dinggang Shen. "Directed Graph Based Image Registration."Computerized Medical Imaging and Graphics, 36:139–151, Mar. 2012.
  31. Wei Gao, John H Gilmore, Dinggang Shen, J Keith Smith, Hongtu Zhu, Weili Lin. "The Synchronization within and Interaction between the Default and Dorsal Attention Networks in Early Infancy." Cerebral Cortex (2012)
  32. Wei Li, Shu Liao, Qianjin Feng, Wufan Chen, Dinggang Shen. "Learning Image Context for Segmentation of Prostate in CT-Guided Radiotherapy." Physics in Medicine and Biology, 57:1283-1308, 2012.
  33. Gang Li, Jingxin Nie, Guorong Wu, Yaping Wang, Dinggang Shen. "Consistent Reconstruction of Cortical Surfaces from Longitudinal Brain MR Images." Neuroimage, 59(4):3805–3820, Feb. 2012.
  34. Chong-Yaw Wee, Pew-Thian Yap, Daoqiang Zhang, Kevin Denny, Jeffrey N Browndyke, Guy G Potter, Kathleen A Welsh-Bohmer, Lihong Wang, Dinggang Shen. "Identification of MCI Individuals Using Structural and Functional Connectivity Networks." Neuroimage, 59(3):2045–2056, Feb. 2012.
  35. Guorong Wu, Qian Wang, Hongjun Jia, Dinggang Shen. "Feature-based Groupwise Registration by Hierarchical Anatomical Correspondence Detection." Human Brain Mapping, 33:253-271, February 2012.
  36. Smith CT, Boettiger CA. "Age modulates the effect of COMT genotype on delay discounting behavior." Psychopharmacology (Berl). 2012 Feb 18. [Epub ahead of print]
  37. Yundi Shi, Sarah J Short, Rebecca C Knickmeyer, Jiaping Wang, Christopher L Coe, Marc Niethammer, John H Gilmore, Hongtu Zhu, Martin A Styner. "Diffusion Tensor Imaging–Based Characterization of Brain Neurodevelopment in Primates." Cerebral Cortex, 2012.
  38. Manhua Liu, Daoqiang Zhang, Dinggang Shen. "Ensemble Sparse Classification of Alzheimer's Disease." Neuroimage, 60(2):1106-1116, Jan. 2012.
  39. Daoqiang Zhang, Dinggang Shen. "Multi-Modal Multi-Task Learning for Joint Prediction of Multiple Regression and Classification Variables in Alzheimer's Disease." Neuroimage, 59(2):895-907, Jan. 2012.
  40. Hongjun Jia, Pew-Thian Yap, Dinggang Shen. "Iterative Multi-Atlas-Based Multi-Image Segmentation with Tree-Based Registration." NeuroImage, 59(1):422-30, Jan. 2012.
  41. Liao LD, Lin CT, Shih YY, Lai HY, Wang PH, Duong TQ, Chang JY, Chen YY, Li ML. "Investigation of the cerebral hemodynamic response function in single blood vessels by functional photoacoustic microscopy." J Biomed Opt (in press).
  42. Shih YY, Muir ER, Li G, De La Garza BH, and Duong TQ. "High resolution 3D microangiography of the rat ocular circulation." Radiology (in press).
  43. Liao LD, Li ML, Shih YY, Lai HY, Chen YY, and Lin CT. "Transcranial imaging of functional cerebral hemodynamic changes in single blood vessels using in vivo photoacoustic microscopy." J Cereb Blood Flow Metab (in press).
  44. Shih YY, Li G, Muir ER, De La Garza BH, Kiel JW, and Duong TQ. "Pharmacological MRI of the retina: blood flow and BOLD responses during nitroprusside infusion." Magn Reson Med [Epub ahead of print].
  45. De La Garza BH, Muir ER, Shih YY, and Duong TQ. "3D magnetic resonance microscopy of the ex vivo retina." Magn Reson Med [Epub ahead of print].
  46. Wang, J., Shen, H. P., and Zhu, H.T. "Discussion of Clustering Random Curves Under Spatial Interdependence with Application to Service Accessibility by Jiang and Serban." Technometrics, 2012.
  47. Daoqiang Zhang, Dinggang Shen. "Predicting Future Clinical Changes of MCI Patients Using Longitudinal and Multimodal Biomarkers." Accepted for PLOS One.
  48. Qian Wang, Pew-Thian Yap, Guorong Wu, Dinggang Shen. "Application of Neuroanatomical Features to Tractography Clustering." Accepted for Human Brain Mapping.
  49. Dajiang Zhu,Kaiming Li, Lei Guo, Xi Jiang, Tuo Zhang, Degang Zhang, Hanbo Chen, Fan Deng, Carlos Farao, Changfeng Jin, ChongYaw Wee, Yixuang Yuan, Peili Lv, Yan Yin, Xiaolei Hu, Lian Duan, Xintao Hu, Junwei Han, Lihong Wang, Dinggang Shen, Lloyd Miller, Lingjiang Li, Tianming Liu. "DICCCOL: Dense Individualized and Common Connectivity-based Cortical Landmarks." Accepted for Cerebral Cortex.
  50. Minjeong Kim, Guorong Wu, Dinggang Shen. "Hierarchical Alignment of Breast DCE-MR Images by Groupwise Registration and Robust Feature Matching." Medical Physics, 39(1):353:366.
  51. Kenji Suzuki, Pingkun Yan, Fei Wang, and Dinggang Shen. "Machine Learning in Medical Imaging." International Journal of Biomedical Imaging, vol. 2012, Article ID 123727, 2 pages, 2012.
  52. Jingxin Nie, Lei Guo, Kaiming Li, Yonghua Wang, Guojun Chen, Longchuan Li, Hanbo Chen, Fan Deng, Xi Jiang, Tuo Zhang, Ling Huang, Carlos Faraco, Degang Zhang, Cong Guo, Pew-Thian Yap, Xintao Hu, Gang Li, Jinglei Lv, Yixuan Yuan, Dajiang Zhu, Junwei Han, Dean Sabatinelli, Qun Zhao, L Stephen Miller, Bingqian Xu, Ping Shen, Simon Platt, Dinggang Shen, Xiaoping Hu, Tianming Liu. "Axonal Fiber Terminations Concentrate on Gyri." Accepted for Cerebral Cortex.
  53. I Kabul, SM Pizer, J Rosenman, M Niethammer. "An Optimal Control Approach for Texture Metamorphosis." Computer Graphics Forum 30 (8), 2341-2353.

 

2011

  1. A. L. Oldenburg, G. Wu, D. Spivak, F. Tsui, A. S. Wolberg and T. H. Fischer. "Imaging and Elastometry of Blood Clots using Magnetomotive Optical Coherence Tomography and Labeled Platelets." IEEE Journal of Selected Topics in Quantum Electronics.  In Press 2011
  2. M.R. Scola, T.C. Nichols, H Zhu, M.C. Caughey, E.P. Merricks, R.A. Raymer, P. Margaritis, K.A. High, and C. M. Gallippi. "ARFI Ultrasound Monitoring of Hemorrhage and Hemostasis In Vivo in Canine von Willebrand Disease and Hemophilia." Ultrasound in Medicine and Biology, in press, 2011.
  3. L. Calderon-Garciduenas, R Engle, A. Mora-Tiscareno, M. Styner, G. Gomez-Garza, H.T.Zhu, V.Jewells, R.Torres-Jardon, L.Romero, M.E.Monroy-Acosta, C. Bryant,L.O. Gonzalez-Gonzalez, and H. Medina Cortina. "Exposure to severe urban air pollution influences cognitive outcomes, brain volume and systemic inflammation in clinically healthy children." Brain and Cognition, in press, 2011.
  4. John H. Gilmore, Feng Shi, Sandra Woolson, Rebecca C. Knickmeyer, Sarah J. Short, Weili Lin, Hongtu Zhu, Robert M. Hamer, Martin Styner, Dinggang Shen. "Longitudinal Development of Cortical and Subcortical Gray Matter from Birth to 2 Years." Cerebral Cortex, In Press, 2011.
  5. Jingxin Nie, Gang Li, Li Wang, John H. Gilmore, Weili Lin, Dinggang Shen. "Computational Growth Model for Measuring Dynamic Cortical Development in the First Year of Life." Accepted for Cerebral Cortex.
  6. Yonghong Shi, Shu Liao, Dinggang Shen. "Learning Statistical Correlation for Fast Prostate Registration in Image-guided Radiotherapy." Medical Physics, 38(11):5980-91, Nov. 2011.
  7. Altamirano LJ, Fields HL, D'Esposito M, Boettiger CA. "Interaction between family history of alcoholism and Locus of Control in the opioid regulation of impulsive responding under the influence of alcohol." Alcohol Clin Exp Res. 2011 Nov;35(11):1905-14.
  8. Wei Gao, John H Gilmore, Kelly S Giovanello, Jeffery Keith Smith, Dinggang Shen, Hongtu Zhu, and Weili Lin. "Temporal and Spatial Evolution of Brain Network Topology during the First Two Years of Life." PLoS One,6(9): e25278. 2011.
  9. Pew-Thian Yap, Yong Fan, Yasheng Chen, John Gilmore, Weili Lin, Dinggang Shen. "Development Trends of White Matter Connectivity in the First Years of Life." PLoS ONE, vol. 6, no. 9, pp. e24678, 2011.
  10. Li Wang, Feng Shi, Pew-Thian Yap, Weili Lin, John H. Gilmore, and Dinggang Shen. "Longitudinally Guided Level Sets for Consistent Tissue Segmentation of Neonates." Accepted for Human Brain Mapping.
  11. Shu Liao, Hongjun Jia, Guorong Wu, and Dinggang Shen. "A Novel Framework for Longitudinal Atlas Construction with Groupwise Registration of Subject Image Sequences." Neuroimage, 59(2):1275-89, Jan. 2012.
  12. Guorong Wu, Qian Wang, Dinggang Shen. "Registration of Longitudinal Brain Image Sequences with Implicit Template and Spatial-Temporal Heuristics." Accepted for Neuroimage
  13. J Caplan, M Niethammer, RM Taylor II, KJ Czymmek. "The power of correlative microscopy: multi-modal, multi-scale, multi-dimensional." Current Opinion in Structural Biology.
  14. Li Wang, Feng Shi, Weili Lin, John H. Gilmore, Dinggang Shen. "Automatic Segmentation of NeonatalImages Using Convex Optimizationand Coupled Level Sets." NeuroImage, 58:805-817, Jul. 2011.
  15. Luping Zhou, Yaping Wang, Yang Li, Pew-Thian Yap, Dinggang Shen. "Hierarchical Anatomical Brain Networks for MCI Prediction: Revisiting Volumetric Measures." PLoS ONE, 6(7): e21935, Jul. 2011.
  16. Gang Li, Dinggang Shen. "Consistent Sulcal Parcellation of Longitudinal Cortical Surfaces." NeuroImage, 57(1):76-88, Jul. 2011.
  17. Guorong Wu, Hongjun Jia, Qian Wang, Dinggang Shen. "SharpMean: Groupwise Registration Guided by Sharp Mean Image and Tree-based Registration." NeuroImage, 56(4): 1968-1981, Jun. 2011.
  18. Rogers W, Shih YY, De La Garza BH, Harrison JM, Roby J, Duong TQ. "A Low Cost Color Visual Stimulator for fMRI." J Neurosci Meth, 2012, 204:379-82.
  19. Zhu, HT., Kong, L, Li, R., Styner, M., Gerig, G, Lin, W and Gilmore, J.H. "FADTTS: Functional Analysis of Diffusion Tensor Tract Statistics." NeuroImage, 56, 1412-1425, 2011.
  20. Skup, M., Zhu, HT., Wang, YP., Giovanello, K.S., Lin, J.A. Shen, D.G., Shi, F., Wang, J.P., Gao, W., Lin, W., Fan, Y., Zhang, H. and ADNI. "Sex Differences in Grey Matter Atrophy Patterns Among AD and aMCI patients: Results from ADNI." NeuroImage, 56, 890-906, 2011.
  21. Mark Walterfang, Jeffrey Chee Leong Looi, Martin Styner, Ruth H Walker, Adrian Danek, Marc Niethammer, Andrew Evans, Katya Kotschet, Guilherme R Rodrigues, Andrew Hughes, Dennis Velakoulis. "Shape alterations in the striatum in chorea-acanthocytosis." Psychiatry Research: Neuroimaging 192 (1), 29-36.
  22. Chao WH, Lin SH, Shih YY, Chen YY, Lo YC, Lin SH, Tsang S, Wu R, and Jaw FS. "Correction of inhomogeneous magnetic resonance images using multiscale retinex for segmentation accuracy improvement." Biomed Signal Proces 2012, 7(2):129–40.
  23. Feng Shi, Pew-Thian Yap, Guorong Wu, Hongjun Jia, John H. Gilmore, WeiliLin, Dinggang Shen. "Infant Brain Atlases from Neonates to 1- and 2-year-olds." PLoS ONE, 6(4): e18746, Apr. 2011.
  24. Daoqiang Zhang, Yaping Wang, Luping Zhou, Hong Yuan, Dinggang Shen. "Multimodal Classification of Alzheimer’s Disease and Mild Cognitive Impairment." Neuroimage, 55(3):856-867, Apr. 2011.
  25. Danielle F Pace, Andinet Enquobahrie, Hua Yang, Stephen R Aylward, Marc Niethammer. "Deformable image registration of sliding organs using anisotropic diffusive regularization." Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium; 2011, 407-413.
  26. Joohwi Lee, Cindy Ehlers, Fulton Crews, Marc Niethammer, Francois Budin, Beatriz Paniagua, Kathy Sulik, Josephine Johns, Martin Styner, Ipek Oguz. "Automatic cortical thickness analysis on rodent brain." Proceedings-Society of Photo-Optical Instrumentation Engineers. 2011; volume 7962.
  27. W Li, L Ibanez, A Gelas, BTT Yeo, M Niethammer, NC Andreasen, VA Magnotta. "An automated pipeline for cortical surface generation and registration of the cerebral cortex." Proceedings of SPIE 7962, 796229.
  28. Pew-Thian Yap, Yasheng Chen, Hongyu An, Yang Yang, John H Gilmore, Weili Lin, Dinggang Shen. "SPHERE: SPherical Harmonic Elastic REgistration of HARDI Data." Neuroimage, 55(2):545-556, Mar. 2011.
  29. Feng Shi, Dinggang Shen, Pew-Thian Yap, Yong Fan, Jie-Zhi Cheng, Hongyu An, Lawrence L. Wald, Guido Gerig, John H. Gilmore, and Weili Lin. "CENTS: Cortical Enhanced Neonatal Tissue Segmentation." Human Brain Mapping, 32:382–396, Mar. 2011.
  30. Jeffrey Chee Leong Looi, Mark Walterfang, Martin Styner, Marc Niethammer, Leif Anders Svensson, Olof Lindberg, Per Östberg, Lisa Botes, Eva Örndahl, Phyllis Chua, Dennis Velakoulis, Lars-Olof Wahlund. "Shape analysis of the neostriatum in subtypes of frontotemporal lobar degeneration: Neuroanatomically significant regional morphologic change." Psychiatry Research: Neuroimaging. 2011; 191:2, 98-111.
  31. Clement Vachet, Heather Cody Hazlett, Marc Niethammer, Ipek Oguz, Joshua Cates, Ross Whitaker, Joseph Piven, Martin Styner. "Group-wise automatic mesh-based analysis of cortical thickness." Proceedings of SPIE, 2011, 7962.
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