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X-ORIGINAL-URL:https://www.med.unc.edu/compmed
X-WR-CALDESC:Events for Computational Medicine
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DTSTART:20210314T070000
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DTSTART:20211107T060000
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DTSTART:20220313T070000
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BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220408T100000
DTEND;TZID=America/New_York:20220408T110000
DTSTAMP:20260403T173959
CREATED:20220113T192214Z
LAST-MODIFIED:20220403T211158Z
UID:10000311-1649412000-1649415600@www.med.unc.edu
SUMMARY:CompMed Research In Progress
DESCRIPTION:Presenter: Yu Shi / Legant Lab \nTalk Title: “Quantitative characterization of lattice light sheet microscopy and its application in automated imaging”
URL:https://www.med.unc.edu/compmed/event/compmed-research-in-progress-22/
LOCATION:NC
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220415T100000
DTEND;TZID=America/New_York:20220415T110000
DTSTAMP:20260403T173959
CREATED:20220113T192312Z
LAST-MODIFIED:20220403T211247Z
UID:10000320-1650016800-1650020400@www.med.unc.edu
SUMMARY:CompMed Research In Progress - Holiday No Meeting
DESCRIPTION:Holiday No Meeting
URL:https://www.med.unc.edu/compmed/event/4001/
LOCATION:NC
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220421T140000
DTEND;TZID=America/New_York:20220421T150000
DTSTAMP:20260403T173959
CREATED:20220414T163057Z
LAST-MODIFIED:20220421T181520Z
UID:10000269-1650549600-1650553200@www.med.unc.edu
SUMMARY:CANCELED - CompMed Seminar
DESCRIPTION:Presenter: Sara Mostafavi\, Ph.D. \nAssociate Professor in the Paul G. Allen School of Computer Science and Engineering at the University of Washington \nTalk Title: “Deep Learning of Immune Cell Differentiation” \nAbstract: The mammalian genome contains several million cis-regulatory elements\, whose differential activity marked by open chromatin determines cellular differentiation. While the growing availability of functional genomics assays allows us to systematically identify cis-regulatory elements across varied cell types\, how the DNA sequence of cis-regulatory elements is decoded and orchestrated on the genome-scale to determine cellular differentiation is beyond our grasp. In this talk\, I’ll present recent work using machine learning as a tool to derive an understanding of the relationship between regulatory sequence and cellular function in the context of immune cell differentiation. In particular\, I’ll present our deep learning approach (AI-TAC) to combining a large and granular compendium of epigenomic data and will describe approaches to robustly interpreting complex\, black-box models in order to uncover mechanistic insights into immune gene regulation (Yoshida et al.\, Cell 2019; Maslova et al.\, PNAS 2020).  Our work shows that a deep learning approach to genome-wide chromatin accessibility can uncover patterns of immune transcriptional regulators that are directly coded in the DNA sequence\, and thus providing a powerful in-silico framework (an in-silico assay of sorts) to mechanistically probe the relationship between a regulatory sequence and its function. \n  \nBio: Since the fall of 2020\, Sara Mostafavi is an Associate Professor in the Paul G. Allen School of Computer Science and Engineering\, at the University of Washington (UW). Prior to joining UW\, she was a faculty member in the Department of Statistics and Medical Genetics at the University of British Columbia (UBC)\, Canada. At UBC\, she also held a Canada Research Chair in Computational Biology and was a recipient of a CIFAR AI Chair. She completed her Ph.D. in the Department of Computer Science at the University of Toronto and performed her postdoctoral research at Stanford University. Her research develops and applies machine learning and statistical methods for understanding the molecular basis of cellular function and human disease.
URL:https://www.med.unc.edu/compmed/event/compmed-seminar-2/
LOCATION:NC
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220506T100000
DTEND;TZID=America/New_York:20220506T110000
DTSTAMP:20260403T173959
CREATED:20220113T192442Z
LAST-MODIFIED:20220429T200934Z
UID:10000321-1651831200-1651834800@www.med.unc.edu
SUMMARY:CompMed Research In Progress
DESCRIPTION:Presenter: Jamshaid Shahir (Purvis Lab) \nTalk Title: A semi-supervised approach to analyzing multi-condition single-cell genomics data using graph neural networks
URL:https://www.med.unc.edu/compmed/event/compmed-research-in-progress-23/
LOCATION:NC
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220513T100000
DTEND;TZID=America/New_York:20220513T110000
DTSTAMP:20260403T173959
CREATED:20220113T192646Z
LAST-MODIFIED:20220505T151509Z
UID:10000322-1652436000-1652439600@www.med.unc.edu
SUMMARY:CompMed Research In Progress
DESCRIPTION:Presenter: Rubinsteyn Lab \nTalk Title: Building better immunological datasets through improved MHC nomenclature parsing
URL:https://www.med.unc.edu/compmed/event/compmed-research-in-progress-24/
LOCATION:NC
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220519T140000
DTEND;TZID=America/New_York:20220519T150000
DTSTAMP:20260403T173959
CREATED:20220519T202346Z
LAST-MODIFIED:20220519T202346Z
UID:10000271-1652968800-1652972400@www.med.unc.edu
SUMMARY:CompMed Seminar
DESCRIPTION:Presenter: Dr. Pratip Chattopadhyay \nTalk Title: From Imagination to Implementation: The Development and Future of High Content Immune Analysis \nAbstract: Over the past 10-20 years\, immunologists have driven a revolution in single-cell analysis. The combined advances in hardware\, reagents\, and software have revealed the incredible complexity of the immune system\, setting the stage for powerful new studies of disease. This presentation reviews the field of single-cell analysis\, discusses paradigm shifts in both technology development and the study of immune cells\, and demonstrates how high content flow cytometry and molecular cytometry can contribute to biomarker discovery. The presentation concludes with a description of new solutions for the next generation of challenges in the field. \nBio:\nCEO\, Talon Biomarkers\nCSO\, TerraFlow Bioinformatics\nPratip Chattopadhyay is an internationally recognized leader in the experimental design\, analysis\, and interpretation of single-cell omics\, having developed some of the most widely used approaches and tools in the field. He has led efforts in the development and application of polychromatic flow cytometry\, immunoassays\, and emerging single-cell technologies (both proteomic and transcriptomic)\, and is an acclaimed lecturer and teacher with global audiences. \nPratip earned a Ph.D. in Molecular Microbiology and Immunology from Johns Hopkins Bloomberg School of Public Health and a B.A. in Biology from the University of Virginia. From 2003-to 2017 he was an NIH Staff Scientist working on the development of technologies for single-cell analysis and immunoassays\, application to fundamental immunology\, and immuno-monitoring in vaccine and disease pathogenesis settings. From 2017-to 2021 Pratip was the Associate Professor (Pathology) and Founding Director\, Precision Immunology laboratory\, NYU Langone Health\, where his laboratory and core facility were focused on identifying changes to the immune system that correlated with or predicted disease outcome or therapeutic efficacy. \nPratip is now leading two start-ups -Talon Biomarkers (CEO\, Founder) and TerraFlow (CSO\, Co-Founder). Talon Biomarkers is a biomarker discovery engine built to capture indicators of disease and therapy from a sea of immune cells. TerraFlow is a new data analysis platform that evaluates millions of phenotypes to identify the cell types that best predict patient outcomes\, in a manner that is easy to explain\, accessible\, and highly interpretable.
URL:https://www.med.unc.edu/compmed/event/compmed-seminar-3/
LOCATION:NC
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220520T100000
DTEND;TZID=America/New_York:20220520T110000
DTSTAMP:20260403T173959
CREATED:20220113T192802Z
LAST-MODIFIED:20220429T203300Z
UID:10000323-1653040800-1653044400@www.med.unc.edu
SUMMARY:CompMed Research In Progress
DESCRIPTION:Presenter: Natalie Stanley CompCy Lab \nTalk Title: “Sketching Single-Cell Datasets for Scalable Downstream Analysis”
URL:https://www.med.unc.edu/compmed/event/compmed-research-in-progress-25/
LOCATION:NC
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220902T100000
DTEND;TZID=America/New_York:20220902T110000
DTSTAMP:20260403T173959
CREATED:20220901T205956Z
LAST-MODIFIED:20220901T210132Z
UID:10000273-1662112800-1662116400@www.med.unc.edu
SUMMARY:CompMed Research in Progress
DESCRIPTION:Presenter: Karin Leiderman \nTalk Title: “Mathematical modeling combined antiplatelet and anticoagulant treatment on thrombin generation under flow”
URL:https://www.med.unc.edu/compmed/event/compmed-research-in-progress-27/
LOCATION:NC
ATTACH;FMTTYPE=image/jpeg:https://www.med.unc.edu/compmed/wp-content/uploads/sites/852/2022/01/Karin-Liederman-scaled.jpg
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220909T100000
DTEND;TZID=America/New_York:20220909T110000
DTSTAMP:20260403T173959
CREATED:20220901T210249Z
LAST-MODIFIED:20220901T210249Z
UID:10000275-1662717600-1662721200@www.med.unc.edu
SUMMARY:Canceled - CompMed Research in Progress
DESCRIPTION:No Meeting today
URL:https://www.med.unc.edu/compmed/event/canceled-compmed-research-in-progress/
LOCATION:NC
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220915T140000
DTEND;TZID=America/New_York:20220915T150000
DTSTAMP:20260403T173959
CREATED:20220908T143632Z
LAST-MODIFIED:20220914T195227Z
UID:10000330-1663250400-1663254000@www.med.unc.edu
SUMMARY:CANCELED CompMed Seminar
DESCRIPTION:Canceled
URL:https://www.med.unc.edu/compmed/event/compmed-seminar-4/
LOCATION:NC
ATTACH;FMTTYPE=image/jpeg:https://www.med.unc.edu/compmed/wp-content/uploads/sites/852/2022/09/Davis_2019_33_sm-copy-scaled.jpg
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220916T100000
DTEND;TZID=America/New_York:20220916T110000
DTSTAMP:20260403T173959
CREATED:20220901T211404Z
LAST-MODIFIED:20220901T211404Z
UID:10000329-1663322400-1663326000@www.med.unc.edu
SUMMARY:CompMed Research in Progress
DESCRIPTION:Presenter: Taebin Kim\nTalk Title: “Multiple Instance Learning for Breast Cancer Histopathology Images”
URL:https://www.med.unc.edu/compmed/event/compmed-research-in-progress-28/
LOCATION:NC
ATTACH;FMTTYPE=image/jpeg:https://www.med.unc.edu/compmed/wp-content/uploads/sites/852/2022/09/Taebin-Kim.jpg
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20221007T100000
DTEND;TZID=America/New_York:20221007T110000
DTSTAMP:20260403T173959
CREATED:20220908T161523Z
LAST-MODIFIED:20220919T183936Z
UID:10000334-1665136800-1665140400@www.med.unc.edu
SUMMARY:Computational Medicine Research in Progress
DESCRIPTION:Presenter: Clark Jeffries\nGrid Developer Bioinformatics\nTalk Title: Plasminogen activator\, SERPINE1\, schizophrenia\, and Karl Pearson
URL:https://www.med.unc.edu/compmed/event/computational-medicine-research-in-progress-2/
LOCATION:NC
ATTACH;FMTTYPE=image/jpeg:https://www.med.unc.edu/compmed/wp-content/uploads/sites/852/2022/09/Jeffries-Clark.jpg
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20221014T100000
DTEND;TZID=America/New_York:20221014T110000
DTSTAMP:20260403T173959
CREATED:20220908T162046Z
LAST-MODIFIED:20220919T191949Z
UID:10000335-1665741600-1665745200@www.med.unc.edu
SUMMARY:Computational Medicine Research in Progress
DESCRIPTION:Presenter: Jack Linehan (Amy Maddox Lab) \nTalk title: Trajectory Classification Method for Anchored Molecular Motor-Biopolymer Interactions in asymmetric cell division
URL:https://www.med.unc.edu/compmed/event/computational-medicine-research-in-progress-3/
LOCATION:NC
ATTACH;FMTTYPE=image/png:https://www.med.unc.edu/compmed/wp-content/uploads/sites/852/2022/09/Jack-Linehan.png
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20221020T140000
DTEND;TZID=America/New_York:20221020T150000
DTSTAMP:20260403T173959
CREATED:20220908T144240Z
LAST-MODIFIED:20220908T145022Z
UID:10000331-1666274400-1666278000@www.med.unc.edu
SUMMARY:CompMed Seminar
DESCRIPTION:Presenter: Guang Yao\nAssociate Professor\, Molecular & Cellular Biology\nUniversity of Arizona\, Tucson\, AZ \nTalk Title: TBA
URL:https://www.med.unc.edu/compmed/event/compmed-seminar-5/
LOCATION:NC
ATTACH;FMTTYPE=image/jpeg:https://www.med.unc.edu/compmed/wp-content/uploads/sites/852/2022/09/yao_profile_photo.jpg
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20221021T100000
DTEND;TZID=America/New_York:20221021T110000
DTSTAMP:20260403T173959
CREATED:20220921T205936Z
LAST-MODIFIED:20220921T210011Z
UID:10000340-1666346400-1666350000@www.med.unc.edu
SUMMARY:No Meeting - Research in Progress Fall Break
DESCRIPTION:
URL:https://www.med.unc.edu/compmed/event/no-meeting-research-in-progress-fall-break/
LOCATION:NC
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20221104T100000
DTEND;TZID=America/New_York:20221104T110000
DTSTAMP:20260403T173959
CREATED:20221018T143339Z
LAST-MODIFIED:20221021T222211Z
UID:10000342-1667556000-1667559600@www.med.unc.edu
SUMMARY:CompMed Research in Progress
DESCRIPTION:Presenter: Jiawen Chen \nTalk Title: “Cell composition inference and identification of layer-specific transcriptional profiles with POLARIS”
URL:https://www.med.unc.edu/compmed/event/compmed-research-in-progress-30/
LOCATION:Mary Ellen Jones 3112\, 116 Manning Drive\, Chapel Hill\, NC\, 27514
ATTACH;FMTTYPE=image/jpeg:https://www.med.unc.edu/compmed/wp-content/uploads/sites/852/2022/10/Jiawen-Chen.jpg
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20221111T100000
DTEND;TZID=America/New_York:20221111T110000
DTSTAMP:20260403T173959
CREATED:20221018T143528Z
LAST-MODIFIED:20221107T180527Z
UID:10000343-1668160800-1668164400@www.med.unc.edu
SUMMARY:CompMed Research in Progress
DESCRIPTION:Presenter: Jolene Ranek \nTalk Title: “Feature selection for preserving biological trajectories in single-cell data”
URL:https://www.med.unc.edu/compmed/event/compmed-research-in-progress-31/
LOCATION:Mary Ellen Jones 3112\, 116 Manning Drive\, Chapel Hill\, NC\, 27514
ATTACH;FMTTYPE=image/jpeg:https://www.med.unc.edu/compmed/wp-content/uploads/sites/852/2020/08/Jolene-Ranek.jpg
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20221117T140000
DTEND;TZID=America/New_York:20221117T150000
DTSTAMP:20260403T173959
CREATED:20220908T145356Z
LAST-MODIFIED:20220921T200546Z
UID:10000332-1668693600-1668697200@www.med.unc.edu
SUMMARY:CompMed Seminar
DESCRIPTION:A Computational Medicine and the Center for Environmental Health and Susceptibility (CEHS) collaboration \nPresenter: Didong Li \nTalk Title: Linear models for case-control data
URL:https://www.med.unc.edu/compmed/event/compmed-seminar-6/
LOCATION:NC
ATTACH;FMTTYPE=image/png:https://www.med.unc.edu/compmed/wp-content/uploads/sites/852/2022/09/Didong-Li.png
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20221118T100000
DTEND;TZID=America/New_York:20221118T110000
DTSTAMP:20260403T173959
CREATED:20221018T143813Z
LAST-MODIFIED:20221107T180833Z
UID:10000344-1668765600-1668769200@www.med.unc.edu
SUMMARY:CompMed Research in Progress
DESCRIPTION:Presenter: Carson Mosso \nTalk Title: “Association Mining and Sensitivity Analysis for Single-cell RNA-sequencing Data“
URL:https://www.med.unc.edu/compmed/event/compmed-research-in-progress-32/
LOCATION:Mary Ellen Jones 3106\, 116 Manning Drive\, 3rd floor\, Chapel Hill\, NC\, 27599\, United States
ATTACH;FMTTYPE=image/jpeg:https://www.med.unc.edu/compmed/wp-content/uploads/sites/852/2022/01/Carson-Mosso.jpg
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20221202T100000
DTEND;TZID=America/New_York:20221202T110000
DTSTAMP:20260403T173959
CREATED:20221018T142858Z
LAST-MODIFIED:20221107T181521Z
UID:10000341-1669975200-1669978800@www.med.unc.edu
SUMMARY:CompMed Research in Progress
DESCRIPTION:Presenter: Sarah Van Alsten \nTalk Title: “Genomic algorithms to distinguish recurrent and second primary breast tumors”
URL:https://www.med.unc.edu/compmed/event/compmed-research-in-progress-29/
LOCATION:Mary Ellen Jones 3112\, 116 Manning Drive\, Chapel Hill\, NC\, 27514
ATTACH;FMTTYPE=image/jpeg:https://www.med.unc.edu/compmed/wp-content/uploads/sites/852/2022/10/Sarah-Van-Alsten.jpg
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20221209T100000
DTEND;TZID=America/New_York:20221209T110000
DTSTAMP:20260403T174000
CREATED:20221207T211012Z
LAST-MODIFIED:20221207T211228Z
UID:10000347-1670580000-1670583600@www.med.unc.edu
SUMMARY:No Meeting - Research in Progress
DESCRIPTION:No Research in Progress today\, have a safe Holiday and see you January 6\, 2023
URL:https://www.med.unc.edu/compmed/event/no-research-in-progress/
LOCATION:NC
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20221215T140000
DTEND;TZID=America/New_York:20221215T150000
DTSTAMP:20260403T174000
CREATED:20220908T145923Z
LAST-MODIFIED:20221207T211338Z
UID:10000333-1671112800-1671116400@www.med.unc.edu
SUMMARY:CompMed Seminar
DESCRIPTION:Presenter: Amy Brock PhD\nAssociate Professor\nRaymond F. Dawson Centennial Fellow\nThe University of Texas at Austin | Biomedical Engineering\, Institute for Cell and Molecular Biology \nTalk title: Tracking population heterogeneity and the dynamics of chemoresistance
URL:https://www.med.unc.edu/compmed/event/compmed-seminar-7/
LOCATION:Bioinformatics Building\, Room 1131\, 130 Mason Farm Rd\, Chapel Hill\, NC\, 27514\, United States
ATTACH;FMTTYPE=image/jpeg:https://www.med.unc.edu/compmed/wp-content/uploads/sites/852/2022/09/Brock_headshot_2022-scaled.jpg
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20221216T100000
DTEND;TZID=America/New_York:20221216T110000
DTSTAMP:20260403T174000
CREATED:20221018T144018Z
LAST-MODIFIED:20221018T144219Z
UID:10000345-1671184800-1671188400@www.med.unc.edu
SUMMARY:No Meeting - Research in Progress Winter Holiday
DESCRIPTION:No Meeting – Research in Progress Winter Holiday
URL:https://www.med.unc.edu/compmed/event/no-meeting-research-in-progress-winter-holiday/
LOCATION:NC
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;VALUE=DATE:20221227
DTEND;VALUE=DATE:20230103
DTSTAMP:20260403T174000
CREATED:20221128T173725Z
LAST-MODIFIED:20221128T173725Z
UID:10000346-1672099200-1672703999@www.med.unc.edu
SUMMARY:Holiday
DESCRIPTION:
URL:https://www.med.unc.edu/compmed/event/holiday/
LOCATION:NC
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20230105T140000
DTEND;TZID=America/New_York:20230105T150000
DTSTAMP:20260403T174000
CREATED:20230102T175924Z
LAST-MODIFIED:20230102T175924Z
UID:10000349-1672927200-1672930800@www.med.unc.edu
SUMMARY:Faculty Candidate Seminar
DESCRIPTION:Presenter: Arjun Bhattacharya\, PhD \nDepartment of Pathology and Laboratory Medicine \nDavid Geffen School of Medicine \nUniversity of California\, Los Angeles \nTalk Title: The breadth and depth of transcriptomics to understand the genetic etiology of diseases \n  \nArjun Bhattacharya\, PhD is a Postdoctoral Fellow in the Department of Pathology and Laboratory Medicine and in Computational Medicine at the David Geffen School of Medicine at UCLA and a Fellow of the Institute for Quantitative and Computational Biosciences. He earned my PhD in Biostatistics at the University of North Carolina at Chapel Hill\, where he focused on statistical genetics\, computational genomics\, and molecular epidemiology. He develops and applies novel computational methods that integrate genetic and functional genomic data to understand complex diseases\, specifically cancer progression\, childhood neurodevelopment\, and other developmental traits.
URL:https://www.med.unc.edu/compmed/event/faculty-candidate-seminar-9/
LOCATION:Lineberger Pagano Conference Room\, 450 West Drive\, Chapel Hill\, 27599\, United States
ATTACH;FMTTYPE=image/jpeg:https://www.med.unc.edu/compmed/wp-content/uploads/sites/852/2023/01/Arjun-headshot.jpg
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20230106T100000
DTEND;TZID=America/New_York:20230106T110000
DTSTAMP:20260403T174000
CREATED:20230102T174545Z
LAST-MODIFIED:20230102T174545Z
UID:10000348-1672999200-1673002800@www.med.unc.edu
SUMMARY:CompMed Research in Progress
DESCRIPTION:Presenter: Timothy Qi \nTalk Title: Apex predators in anti-tumor immunity
URL:https://www.med.unc.edu/compmed/event/compmed-research-in-progress-33/
LOCATION:NC
ATTACH;FMTTYPE=image/jpeg:https://www.med.unc.edu/compmed/wp-content/uploads/sites/852/2023/01/Timothy-Qi.jpg
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20230110T160000
DTEND;TZID=America/New_York:20230110T170000
DTSTAMP:20260403T174000
CREATED:20230102T193028Z
LAST-MODIFIED:20230102T193028Z
UID:10000351-1673366400-1673370000@www.med.unc.edu
SUMMARY:Faculty Candidate Seminar
DESCRIPTION:Presenter: Haibo Ni\, PhD \nDepartment of Pharmacology\, School of Medicine \nUniversity of California\, Davis \nTalk Title: Quantitative systems physiology and pharmacology for cardiac arrhythmias \n  \nDr. Haibo Ni is an Assistant Project Scientist at the Department of Pharmacology\, University of California Davis. He obtained his Ph.D. degree in Biological Physics from the University of Manchester\, U.K.\, in 2017\, and completed postdoctoral training with Prof. Eleonora Grandi’s lab at Davis. Dr. Ni received a prestigious American Heart Association (AHA) Postdoctoral Fellowship and is a grant reviewer for AHA Fellowship programs. He has 28 peer-reviewed journal publications and one book chapter in press.\nDr. Ni’s research advances quantitative systems investigation of cardiac physiology\, pathophysiology\, and pharmacology by developing multiscale and multiphysics computational frameworks of the heart. Dr. Ni’s work focuses on applying these frameworks to dissect complex mechanisms of heart diseases and define and optimize new therapeutic strategies through in-silico drug screening and virtual clinical trials using personalized simulations\, with an emphasis on heart rhythm disorders.
URL:https://www.med.unc.edu/compmed/event/faculty-candidate-seminar-10/
LOCATION:Bioinformatics Building\, Room 1131\, 130 Mason Farm Rd\, Chapel Hill\, NC\, 27514\, United States
ATTACH;FMTTYPE=image/jpeg:https://www.med.unc.edu/compmed/wp-content/uploads/sites/852/2023/01/Haibo_Ni_Photo-scaled.jpg
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20230112T140000
DTEND;TZID=America/New_York:20230112T150000
DTSTAMP:20260403T174000
CREATED:20230102T193740Z
LAST-MODIFIED:20230102T193740Z
UID:10000352-1673532000-1673535600@www.med.unc.edu
SUMMARY:Faculty Candidate Seminar
DESCRIPTION:Presenter: Abigail Lind\, PhD \nGladstone Institutes\, UCSF\, San Francisco\, CA \nTalk Title: From pathogens to commensals: human-associated microbial eukaryotes through the lens of genomics and evolution \n  \nHumans coexist with myriad microbes that live within and on us\, impacting our health in beneficial and detrimental ways. These microbes come from all domains of life and include bacteria\, archaea\, and eukaryotes. Eukaryotic microbes\, including protists and fungi\, are emerging as key members of the microbiome that influence other microbiota and host health in multifaceted ways. The factors that differentiate negative and positive interactions with a human host\, and mechanistically how eukaryotic microbes accomplish these impacts\, are unknown. \nI have developed methods to routinely and accurately identify eukaryotic microbes in microbiomes\, and discovered that multiple commensal protists are common members of a healthy gut. I have found that Blastocystis\, a diverse species complex of stramenopile protists\, are the most prevalent commensal gut eukaryotes worldwide and can be found in the guts of animals from insects to humans. Interestingly\, Blastocystis is closely associated with gut health\, correlating with decreased inflammation and high bacterial diversity. However\, we understand very little about the biology of this common organism\, which in the past has even been viewed as a parasite. Using comparative and functional genomics approaches in combination with mechanistic experiments on defined anaerobic cultures I investigate the function of Blastocystis and other commensal gut protists in the microbiome. These approaches have identified key biological principles of Blastocystis and in the future will determine how these common commensal gut protists interact with bacterial gut microbiota and the human host to impact health.
URL:https://www.med.unc.edu/compmed/event/faculty-candidate-seminar-11/
LOCATION:Bioinformatics Building\, Room 1131\, 130 Mason Farm Rd\, Chapel Hill\, NC\, 27514\, United States
ATTACH;FMTTYPE=image/jpeg:https://www.med.unc.edu/compmed/wp-content/uploads/sites/852/2023/01/Abigail-Lind-Headshot-scaled.jpeg
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20230113T100000
DTEND;TZID=America/New_York:20230113T110000
DTSTAMP:20260403T174000
CREATED:20230102T180718Z
LAST-MODIFIED:20230102T180848Z
UID:10000350-1673604000-1673607600@www.med.unc.edu
SUMMARY:No Meeting - Research in Progress
DESCRIPTION:In honor of Martin Luther King Jr. Day on Monday\, no meeting today.
URL:https://www.med.unc.edu/compmed/event/no-meeting-research-in-progress/
LOCATION:NC
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20230117T160000
DTEND;TZID=America/New_York:20230117T170000
DTSTAMP:20260403T174000
CREATED:20220921T201121Z
LAST-MODIFIED:20230110T142312Z
UID:10000336-1673971200-1673974800@www.med.unc.edu
SUMMARY:Faculty Candidate Seminar
DESCRIPTION:Presenter: Christopher Park \nSimons Foundation\, Flatiron Institute\, New York \nCenter for Computational Biology \nTalk Title: The impact of RNA-binding protein dysregulation on psychiatric disorder risk \n  \nChristopher Park is a Flatiron Research Scientist at the Flatiron Institute\, a research division of the Simons Foundation. Christopher’s background is at the intersection of computational biology\, human genetics and RNA neurobiology\, focusing on elucidating the pathogenic mechanisms that connect genetic risk to psychiatric disorders. Christopher also holds a research interest in health conditions that intersect with the endocrine system. \nPrior to joining the Simons Foundation\, Christopher was a postdoctoral researcher in the laboratory of Dr. Robert Darnell at Rockefeller University and the New York Genome Center. He completed his Ph.D. training at Princeton University with Dr. Olga Troyanskaya. In addition to his Ph.D.\, Christopher holds a B.S. in Biochemistry and Computer Science from the University of Washington\, Seattle\, where he also worked with Dr. William Stafford Noble tackling problems related to proteomics.
URL:https://www.med.unc.edu/compmed/event/compmed-seminar-8/
LOCATION:NC
ATTACH;FMTTYPE=image/jpeg:https://www.med.unc.edu/compmed/wp-content/uploads/sites/852/2022/09/Christopher_Park-scaled.jpg
ORGANIZER;CN="Victoria Doyle":MAILTO:vdoyle@email.unc.edu
END:VEVENT
END:VCALENDAR