{"id":16060,"date":"2025-08-08T11:02:01","date_gmt":"2025-08-08T15:02:01","guid":{"rendered":"https:\/\/www.med.unc.edu\/genetics\/?p=16060"},"modified":"2025-08-08T11:02:01","modified_gmt":"2025-08-08T15:02:01","slug":"department-of-genetics-publications-for-june-29th-august-2nd-2025","status":"publish","type":"post","link":"https:\/\/www.med.unc.edu\/genetics\/department-of-genetics-publications-for-june-29th-august-2nd-2025\/","title":{"rendered":"Department of Genetics Publications for June 29th – August 2nd, 2025"},"content":{"rendered":"

\"UNCDepartment of Genetics faculty, postdocs, students and collaborators published 39 papers during June 29th – August 2nd 2025.<\/p>\n

 <\/p>\n

Pan-cancer immune and stromal deconvolution predicts clinical outcomes and mutation profiles.\u00a0<\/a><\/u><\/p>\n

Bhinder B, Friedl V, Sethuraman S, Risso D, Chiotti KE, Mashl RJ, Ellrott\u00a0KP, Lee JA, Wong CK, Gyan K, Deshpande A, Imielinski\u00a0M, Bareja R, Stuart J, Peto M, Hoadley KA<\/b>, Lazar AJ, Cherniack\u00a0AD, Zhu J, Cao S, Rubin M, Wang W, Bathe OF, Robine N, Ding L, Laird PW, Zhou W, Shen H, Thorsson V, Yeh JJ, Bailey MH, Zhou DC, Peng XL, Goldman M, Li Y, Korkut A, Sahni N, Hayes DN, Mensah MKA, Felau I, Kemal A, Caesar-Johnson S, Demchok JA, Yang L, Ferguson ML, Tarnuzzer\u00a0R, Wang Z, Zenklusen\u00a0JC; Cancer Genome Atlas Analysis Network; Spellman P, Elemento\u00a0O.<\/p>\n

Sci Rep. 2025 Jul 4;15(1):23921. doi: 10.1038\/s41598-025-09075-y.<\/p>\n

PMID:\u00a040615649<\/p>\n

 <\/p>\n

The Psychiatric Genomics Consortium: discoveries and directions.\u00a0<\/a><\/u><\/p>\n

Agrawal A, Bulik CM, Abebe DS, Andreassen OA, Atkinson EG, Choi KW, Corvin A, Davies HL, Davis LK, Docherty AR, Edenberg\u00a0HJ, Franke B, Gelernter J, Giusti-Rodr\u00edguez P, Hettema\u00a0JM, Hjerling-Leffler J, Huang H, Johnson EC, Lewis CM, Lu Y, Lynall\u00a0ME, Martin J, McIntosh AM, Montalvo-Ortiz JL, Mullins N, Nievergelt\u00a0CM, O’Connell KS, O’Donovan MC, Okewole\u00a0A, Peterson RE, Posthuma D, Sebat J, Smoller JW, Sud R, Viswanath B, Walters JTR, Won H<\/b>, Wray NR, Sullivan PF<\/b>; Coordinating Committee of the Psychiatric Genomics Consortium.<\/p>\n

Lancet Psychiatry. 2025 Jun 26:S2215-0366(25)00124-5. doi: 10.1016\/S2215-0366(25)00124-5. Online ahead of print.<\/p>\n

PMID: 40582370\u00a0Review.<\/p>\n

 <\/p>\n

Genetic effects on chromatin accessibility uncover mechanisms of liver gene regulation and quantitative traits.\u00a0<\/a><\/u><\/p>\n

Currin KW, Perrin HJ, Pandey GK, Alkhawaja\u00a0AA, Vadlamudi S, Musser AE, Etheridge AS, Broadaway KA, Rosen JD<\/b>, Varshney A, Chaudhry AS, Gallins\u00a0PJ, Wright FA, Zhou YH, Parker SCJ, Raffield LM<\/b>, Schuetz EG, Innocenti F, Mohlke KL.<\/b><\/p>\n

Genome Res. 2025 Jul 1;35(7):1485-1502. doi: 10.1101\/gr.279741.124.<\/p>\n

PMID: 40393811<\/p>\n

 <\/p>\n

The Interplay of Ontogeny and Phylogeny at the Transcriptome Level of the Tetrapod Heart.\u00a0<\/a><\/u><\/p>\n

Cordero GA, Holloway AK, Friedrich T, Eme J, Eckalbar\u00a0W, Kusumi\u00a0K, Janzen FJ, Hicks JW, Conlon FL<\/b>, Bruneau BG, Pollard KS.<\/p>\n

J Exp Zool\u00a0B Mol Dev Evol. 2025 Jul 3. doi: 10.1002\/jez.b.23312. Online ahead of print.<\/p>\n

PMID: 40605499<\/p>\n

 <\/p>\n

Unmet needs of adults living with mucopolysaccharidosis II: data from the Hunter Outcome Survey.\u00a0<\/a><\/u><\/p>\n

Muenzer J<\/b>, Amartino\u00a0H, Giugliani\u00a0R, Harmatz P, Lin SP, Link B, Molter D, Ramaswami U, Scarpa M, Botha J, Audi J, Burton BK.<\/p>\n

Orphanet\u00a0J Rare Dis. 2025 Jul 1;20(1):319. doi: 10.1186\/s13023-024-03464-8.<\/p>\n

PMID: 40598289 Free PMC article.<\/b><\/p>\n

 <\/p>\n

An effluent pump family distributed across plant commensal bacteria conditions host- and organ-specific glucosinolate detoxification.\u00a0<\/a><\/u><\/p>\n

Russ D, Fitzpatrick CR, Saha C, Law TF, Jones CD<\/b>, Kliebenstein\u00a0DJ, Dangl JL.<\/p>\n

Nat Commun. 2025 Jul 1;16(1):5699. doi: 10.1038\/s41467-025-61266-3.<\/p>\n

PMID: 40593847 Free PMC article.<\/b><\/p>\n

 <\/p>\n

BAHCC1 binds H4K20me1 to facilitate the MCM complex loading and DNA replication.\u00a0<\/a><\/u><\/p>\n

Li D, Zhang ZM, Mei L, Yu Y, Guo Y, Mackintosh SG, Chen J, Allison DF, Kim A, Storey\u00a0AJ, Edmondson RD, Byrum SD, Tackett AJ, Cai L<\/b>, Cook JG, Song J, Wang GG.<\/p>\n

Nat Commun. 2025 Jul 1;16(1):5502. doi: 10.1038\/s41467-025-61284-1.<\/p>\n

PMID: 40592879 Free PMC article.<\/b><\/p>\n

 <\/p>\n

Cell-Derived Epigenomic Markers of Chronic Stress Distinguish Breast Cancer Phenotypes.\u00a0<\/a><\/u><\/p>\n

Acharya A, Zannas AS.<\/b><\/p>\n

Yale J Biol Med. 2025 Jun 30;98(2):147-157. doi: 10.59249\/YYQN6894. eCollection\u00a02025 Jun.<\/p>\n

PMID: 40589942 Free PMC article.<\/b><\/p>\n

 <\/p>\n

Identifying People Living With or Those at Risk for HIV in a Nationally Sampled Electronic Health Record Repository Called the National Clinical Cohort Collaborative: Computational Phenotyping Study.\u00a0<\/a><\/u><\/p>\n

Hurwitz E<\/b>, Varley CD, Anzolone\u00a0AJ, Madhira\u00a0V, Olex AL, Sun J, Vaidya D, Fadul N, Islam JY, Jackson LE, Wilkins KJ, Butzin-Dozier Z, Li D, Safo SE, McMurry JA<\/b>, Maheria\u00a0P, Williams T, Hassan SA, Haendel MA<\/b>, Patel RC; National Clinical Cohort Collaborative (N3C) Consortium.<\/p>\n

JMIR Med Inform. 2025 Jul 11;13:e68143. doi: 10.2196\/68143.<\/p>\n

PMID:\u00a040644699<\/p>\n

 <\/p>\n

Protein quantitative trait locus analysis in African American and non-Hispanic White individuals.\u00a0<\/a><\/u><\/p>\n

Cai Y, Johnson M, Haessler J, Molstad AJ, Hwang SJ, Joehanes\u00a0R, Murabito JM, Tahir UA, Franceschini N<\/b>, Gerszten\u00a0RE, Sun W, Levy D,\u00a0Raffield LM<\/b>, Kooperberg\u00a0C, Hsu L, Reiner AP.<\/p>\n

Genome Biol. 2025 Jul 10;26(1):200. doi: 10.1186\/s13059-025-03671-x.<\/p>\n

PMID:\u00a040640959<\/p>\n

 <\/p>\n

Identification of Direct-Acting nsP2 Helicase Inhibitors with Antialphaviral\u00a0Activity.\u00a0<\/a><\/u><\/p>\n

Muthu Ramalingam B, Sears JD, Talbot KM, Su YN, Houliston\u00a0S, Hossain MA, Davis-Gilbert ZW, Zhao C, Oh HJ, Brown PJ, Sanders MK<\/b>, Moorman SR, Ojha D, Burdick JE, Law I, Morales NL, Martinez SA<\/b>, Loppnau P, Garcia Perez J, Drobish AM, Morrison TE, Streblow ZJ, Streblow DN, Arrowsmith CH, Vargason A, Cou\u00f1ago\u00a0RM, Halabelian\u00a0L, Arnold JJ, Cameron CE, Moorman NJ, Heise MT<\/b>, Willson TM.<\/p>\n

J Med Chem. 2025 Jul 9. doi: 10.1021\/acs.jmedchem.5c00635. Online ahead of print.<\/p>\n

PMID:\u00a040634283<\/p>\n

 <\/p>\n

Transcriptomic Predictors of Survival for Palbociclib + Endocrine Therapy Versus Capecitabine in Aromatase Inhibitor-Resistant Breast Cancer From the GEICAM\/2013-02 PEARL Trial.\u00a0<\/a><\/u><\/p>\n

Agrawal YN, Fern\u00e1ndez-Mart\u00ednez A<\/b>, Gil-Gil M, Zielinski C, Ruiz-Borrego M, Ciruelos\u00a0EM, Mu\u00f1oz M, Margel\u00ed\u00a0M, Bermejo B, Ant\u00f3n A, Kahan Z, Cs\u00f6szi\u00a0T, Alonso-Romero JL, Garc\u00eda-Saenz J\u00c1, S\u00e1nchez-Rovira P, \u00c1lvarez E, Chac\u00f3n JI, Gonz\u00e1lez-Santiago S, Rodr\u00edguez CA, Servitja\u00a0S, Pfefferle AD, Herranz J, Liu Y, Carey LA, Romero-Camarero I, Caballero R, Guerrero-Zotano\u00a0\u00c1, Perou CM<\/b>, Mart\u00edn M.<\/p>\n

JCO Precis Oncol. 2025 Jul;9:e2400937. doi: 10.1200\/PO-24-00937. Epub\u00a02025 Jul 9.<\/p>\n

PMID:\u00a040632974\u00a0Clinical Trial.<\/p>\n

 <\/p>\n

The host response to influenza infections in human lung and macrophages cell lines.\u00a0<\/a><\/u><\/p>\n

Aguilar C, Lambertz RLO, Heise M<\/b>, Eulalio A, Schughart\u00a0K.<\/p>\n

BMC Genom\u00a0Data. 2025 Jul 8;26(1):46. doi: 10.1186\/s12863-025-01341-2.<\/p>\n

PMID:\u00a040629279 Free PMC article.<\/b><\/p>\n

 <\/p>\n

Mapping DNA methylation to cardiac pathologies induced by beta-adrenergic stimulation in a large panel of mice.\u00a0<\/a><\/u><\/p>\n

Lahue\u00a0C<\/b>, Wong E, Dalal A<\/b>, Tan Lek Wen W, Ren S, Foo R, Wang Y, Rau CD.<\/b><\/p>\n

Epigenetics. 2025 Dec;20(1):2524411. doi: 10.1080\/15592294.2025.2524411. Epub\u00a02025 Jul 7.<\/p>\n

PMID:\u00a040624825 Free PMC article.<\/b><\/p>\n

 <\/p>\n

Overexpression of TSG101 causes the development of adenosquamous\u00a0mammary carcinoma.\u00a0<\/a><\/u><\/p>\n

Dennaoui\u00a0R, R\u00e4dler\u00a0PD<\/b>, Wicker MN, Vistisen K, Ferraiuolo RM, Triplett AA, Shrestha H, Liner TA, Manthey KC, Rui H, Cardiff RD, Gunn TM, Perou CM<\/b>, Wagner KU.<\/p>\n

Breast Cancer Res. 2025 Jul 7;27(1):126. doi: 10.1186\/s13058-025-02007-8.<\/p>\n

PMID:\u00a040624726 Free PMC article.<\/b><\/p>\n

 <\/p>\n

Exogenous Hormones, Tumor Intrinsic Subtypes, and Breast Cancer.\u00a0<\/a><\/u><\/p>\n

Le Cornet C, Jung AY, Behrens S, Middha P, Truong T, Jernstr\u00f6m\u00a0H, Bolla MK, Wang Q, Southey MC, Beane Freeman LE, Koutros S, Stone J, Rennert G, Shulman K, Aronson KJ, Murphy RA, Gu\u00e9nel\u00a0P, Patel AV, Bodelon\u00a0C, Teras LR, Shahi S, Lacey JV, Dossus\u00a0L, Kaaks\u00a0R, Holleczek\u00a0B, Brenner H, Brauch H, Hoppe R, Czene K, Hall PFL, Mannermaa\u00a0A, Wu AH, Obi N, Michailidou K, Panayiotidis\u00a0MI, McLean C, Haiman CA, Augustinsson A, Zheng W, Shu XO, Perou CM<\/b>, Troester MA, Van Alsten S, Eliassen AH, Abubakar M, Kraft P, Ahearn TU, Evans DG, Wolk A, Milne RL, Easton DF, Pharoah PDP, Schmidt MK, Garc\u00eda-Closas\u00a0M, Vachon CM, Fortner RT, Chang-Claude J.<\/p>\n

JAMA Netw\u00a0Open. 2025 Jul 1;8(7):e2519236. doi: 10.1001\/jamanetworkopen.2025.19236.<\/p>\n

PMID: 40622713 Free PMC article.<\/b><\/p>\n

 <\/p>\n

Leveraging generative AI to assist biocuration\u00a0of medical actions for rare disease.\u00a0<\/a><\/u><\/p>\n

Niyonkuru E, Caufield JH, Carmody LC, Gargano MA, Toro S, Whetzel PL<\/b>, Blau H, Soto Gomez M, Casiraghi E, Chimirri\u00a0L, Reese JT, Valentini G, Haendel MA<\/b>, Mungall CJ, Robinson PN.<\/p>\n

Bioinform\u00a0Adv. 2025 Jun 12;5(1):vbaf141. doi: 10.1093\/bioadv\/vbaf141. eCollection\u00a02025.<\/p>\n

PMID: 40621601 Free PMC article.<\/b><\/p>\n

 <\/p>\n

HER2DX and survival outcomes in early-stage HER2-positive breast cancer: an individual patient-level meta-analysis.\u00a0<\/a><\/u><\/p>\n

Villacampa G, Pascual T, Tarantino P, Cort\u00e9s J, Perez-Garc\u00eda J, Llombart-Cussac\u00a0A, Conte P, Mancino M, Guarneri V, Dieci\u00a0MV, Waks AG, Schettini F, Bras\u00f3-Maristany F, Griguolo\u00a0G, de Castro BA, Reboredo C, Antol\u00edn S, Bueno-Mui\u00f1o\u00a0C, Echavarr\u00eda\u00a0I, L\u00f3pez-Tarruella\u00a0S, Massarrah\u00a0T, Del Monte-Mill\u00e1n M, Mart\u00edn M, Buckingham W, Parker JS<\/b>, Vivancos A, Polyak K, Filho OM, Wolff AC, DeMichele A, Tung NM, Perou CM<\/b>, Par\u00e9 L, Villagrasa\u00a0P, Prat A, Tolaney\u00a0SM.<\/p>\n

Lancet Oncol. 2025 Jul 14:S1470-2045(25)00276-1. doi: 10.1016\/S1470-2045(25)00276-1. Online ahead of print.<\/p>\n

PMID:\u00a040675165<\/p>\n

 <\/p>\n

DNA Methylation Signatures of Cardiovascular Health Provide Insights Into Diseases.\u00a0<\/a><\/u><\/p>\n

Carbonneau M, Li Y, Qu Y, Zheng Y, Wood AC, Wang M, Liu C, Huan T, Joehanes\u00a0R, Guo X, Yao J, Taylor KD, Tracy RP, Durda P, Liu Y, Johnson WC, Post WS, Blackwell T, Rotter JI, Rich SS, Redline S, Fornage\u00a0M, Wang J, Ning H, Hou L, Lloyd-Jones D, Ferrier K, Min YI, Carson AP, Raffield LM<\/b>, Teumer A, Grabe HJ, V\u00f6lzke\u00a0H, Nauck M, D\u00f6rr M, Domingo-Relloso\u00a0A, Fretts A, Tellez-Plaza M, Cole SA, Navas-Acien\u00a0A, Wang M, Murabito JM, Heard-Costa NL, Prescott B, Xanthakis\u00a0V, Mozaffarian\u00a0D, Levy D, Ma J.<\/p>\n

Circulation. 2025 Jul 14:10.1161\/CIRCULATIONAHA.124.073181. doi: 10.1161\/CIRCULATIONAHA.124.073181. Online ahead of print.<\/p>\n

PMID:\u00a040654086<\/p>\n

 <\/p>\n

Genomic loci and molecular genetic mechanisms for hidradenitis suppurativa.\u00a0<\/a><\/u><\/p>\n

Broadaway KA, Sun Q, Edmiston SN, Currin KW, Vadlamudi S,<\/b>\u00a0Miller-Fleming TW, Shi Y, Fajgenbaum\u00a0K, Melendez-Gonzalez M, Bui H, Blum FR, Westerkam L, Shams R, Mallela T, Levitt B, Lin L, Hao H, Memili\u00a0A, Straub P, Zhou W, Harris KM, Martin A, Cox NJ, Liu Z, Thomas NE, Li Y, Mohlke KL,<\/b>\u00a0Sayed CJ.<\/p>\n

Br J Dermatol. 2025 Jul 12:ljaf277. doi: 10.1093\/bjd\/ljaf277. Online ahead of print.<\/p>\n

PMID:\u00a040650879<\/p>\n

 <\/p>\n

Transdiagnostic links of reward processing in obsessive-compulsive disorder and depression.\u00a0<\/a><\/u><\/p>\n

Wagner KM, Cervin M, Cheng JSC, Arriaga J, Cruz VZ, Berrones D, Mu\u00f1oz JS, Frederick RM, Anderberg JL, N\u00fa\u00f1ez Bracho BE, Adorno VR, Fontenelle LF, Wiese AD, Crowley JJ<\/b>, Storch EA; Latin American Trans-Ancestry Initiative for OCD genomics (LATINO); Brazilian Obsessive-Compulsive Spectrum Disorder Working Group (GTTOC).<\/p>\n

J Affect Disord. 2025 Jul 15:119886. doi: 10.1016\/j.jad.2025.119886. Online ahead of print.<\/p>\n

PMID: 40675261<\/p>\n

 <\/p>\n

Surgeon Decision-Making: A Contemporary, Qualitative Analysis of Urologists.\u00a0<\/a><\/u><\/p>\n

Spratte BN, Poulos K, Reines K, Blalock S, Bennett AV, Gessner KH<\/b>, Nielsen ME, Reuland DS, Basch E, Tan HJ; UNC Connected Health for Applications &amp; Intervention (CHAI) Core.<\/p>\n

J Am Coll Surg. 2025 Jul 21. doi: 10.1097\/XCS.0000000000001498. Online ahead of print.<\/p>\n

PMID:\u00a040680091<\/p>\n

 <\/p>\n

Integrating the Continuum of Genetic Testing From Fetus to Neonate: A Review of Prenatal Genetic Testing and the Overlap With Newborn Testing.\u00a0<\/a><\/u><\/p>\n

Harris S, Vora NL.<\/b><\/p>\n

Prenat Diagn. 2025 Jul 17. doi: 10.1002\/pd.6849. Online ahead of print.<\/p>\n

PMID: 40675929\u00a0Review.<\/p>\n

 <\/p>\n

A DEEP NEURAL NETWORK TWO-PART MODEL AND FEATURE IMPORTANCE TEST FOR SEMI-CONTINUOUS DATA.\u00a0<\/a><\/u><\/p>\n

Zou B, Mi X, Wan S, Wu D, Xenakis JG, Hu J, Zou F.<\/b><\/p>\n

Ann Appl Stat. 2025 Jun;19(2):1314-1331. doi: 10.1214\/25-aoas2013. Epub\u00a02025 May 28.<\/p>\n

PMID: 40667518 Free PMC article.<\/b><\/p>\n

 <\/p>\n

Evaluating the role of alveolar macrophages in tolerance to ozone.\u00a0<\/a><\/u><\/p>\n

Smith GJ,<\/b>\u00a0Nalesnik M, Immormino RM, Simon JM, Harkema JR, Mock JR, Moran TP, Kelada SNP.<\/b><\/p>\n

Toxicol\u00a0Sci. 2025 Jul 25:kfaf095. doi: 10.1093\/toxsci\/kfaf095. Online ahead of print.<\/p>\n

PMID: 40711967<\/p>\n

 <\/p>\n

Novel insights into post-myocardial infarction cardiac remodeling through algorithmic detection of cell-type composition shifts.\u00a0<\/a><\/u><\/p>\n

Gural B,<\/b>\u00a0Kirkland L, Hockett A,<\/b>\u00a0Sandroni P, Zhang J, Rosa-Garrido M, Swift SK, Chapski DJ, Flinn MA, O’Meara CC, Vondriska TM, Patterson M, Jensen BC, Rau CD.<\/b><\/p>\n

PLoS\u00a0Genet. 2025 Jul 24;21(7):e1011807. doi: 10.1371\/journal.pgen.1011807. Online ahead of print.<\/p>\n

PMID: 40705823<\/p>\n

 <\/p>\n

Culture Media Influences Primary Human Bronchial Epithelial Cell Morphology, Differentiation Status, and Transcriptional Response to Ozone Exposure.\u00a0<\/a><\/u><\/p>\n

Lester SA, Abdelwahab SH<\/b>, Randell SH, Kelada SNP.<\/b><\/p>\n

Toxicol\u00a0Sci. 2025 Jul 23:kfaf089. doi: 10.1093\/toxsci\/kfaf089. Online ahead of print.<\/p>\n

PMID:\u00a040700611<\/p>\n

 <\/p>\n

Advances in machine learning for ABCA4-related retinopathy: segmentation and phenotyping.\u00a0<\/a><\/u><\/p>\n

Shwetar\u00a0YJ,<\/b>\u00a0Brooks BP, Jeffrey BG, Solomon BD, Haendel MA.<\/b><\/p>\n

Int Ophthalmol. 2025 Jul 23;45(1):314. doi: 10.1007\/s10792-025-03690-4.<\/p>\n

PMID: 40699379 Free PMC article.<\/b>\u00a0Review.<\/p>\n

 <\/p>\n

Polygenic prediction of body mass index and obesity through the life course and across ancestries.\u00a0<\/a><\/u><\/p>\n

Smit RAJ, Wade KH, Hui Q, Arias JD, Yin X, Christiansen MR, Yengo L, Preuss MH, Nakabuye M, Rocheleau G, Graham SE, Buchanan VL, Chittoor G, Graff M, Guindo-Mart\u00ednez M, Lu Y, Marouli\u00a0E, Sakaue\u00a0S, Spracklen CN<\/b>, Vedantam\u00a0S, Wilson EP,<\/b>\u00a0Chen SH, Ferreira T, Ji Y, Karaderi\u00a0T, L\u00fcll\u00a0K, Machado M, Malden DE, Medina-Gomez C, Moore A, R\u00fceger\u00a0S, Akiyama M, Allison MA, Alvarez M, Andersen MK, Appadurai V, Arbeeva\u00a0L, Bartell E, Bhaskar S, Bielak LF, Bis JC, Bollepalli\u00a0S, Bork-Jensen J, Bradfield JP, Bradford Y, Brandl C, Braund PS, Brody JA, Broeckel U, Burgdorf KS, Cade BE, Cai Q, Camarda S, Campbell A, Ca\u00f1adas-Garre M, Chai JF, Chesi\u00a0A, Choi SH, Christofidou\u00a0P, Couture C, Cuellar-Partida G, Danning R, Degenhardt F, Delgado GE, Delitala\u00a0A, Demirkan A, Deng X, Dietl A, Dimitriou M, Dimitrov L, Dorajoo\u00a0R, Eichelmann F, Eliasen AU, Engmann JE, Erdos MR, Fairhurst-Hunter Z, Farmaki AE, Faul JD, Fernandez-Lopez JC, Forer L, Frank M, Freitag-Wolf S, Fritsche LG, Fuchsberger C, Galesloot\u00a0TE, Gao Y, Geller F, Giannakopoulou O, Giulianini\u00a0F, Gjesing AP, Goel A, Gordon SD, Gorski M, Grove J, Guo X, Gustafsson S, Haessler J, Hansen TF, Havulinna\u00a0AS, Haworth SJ, Heard-Costa N, Hemerich D, Highland HM, Hindy G, Ho YL, Hofer E, Holliday E, Horn K, Hornsby WE, Hottenga\u00a0JJ, Huang H, Huang J, Huerta-Chagoya A, Huo S, Hwang MY, Hwu CM, Iha H, Ikeda DD, Isono M, Jackson AU, Jansen IE, Jiang Y, Johansson I, Jonsson A, J\u00f8rgensen T, Kalafati\u00a0IP, Kanai M, Kanoni S, K\u00e5rhus\u00a0LL, Kasturiratne\u00a0A, Katsuya T, Kawaguchi T, Kember RL, Kentistou\u00a0KA, Kim D<\/b>, Kim HN, Kim YJ, Kleber ME, Knol MJ, Kurbasic\u00a0A, Lauzon M, Le P, Lea R, Lee JY, Lee WJ, Leonard HL, Li H, Li SA, Li X, Li X, Liang J, Lin H, Lin K, Liu J, Liu X, Lo KS, Long J, Lores-Motta L, Luan J, Lyssenko\u00a0V, Lyytik\u00e4inen LP, Mahajan A, Malik MZ, Mamakou\u00a0V, Mangino M, Manichaikul\u00a0A, Marten J, Mattheisen M, McDaid AF, Mei Q, Meiselbach\u00a0H, Melendez TL, Milaneschi\u00a0Y, Miller JE, Millwood IY, Mishra PP, Mitchell RE, M\u00f8llehave LT, Mononen N, Mucha S, Munz M, Mykk\u00e4nen J, Nakatochi\u00a0M, Nardone GG, Nelson CP, Nethander\u00a0M, Nho CW, Nielsen AA, Nolte IM, Nongmaithem\u00a0SS, Noordam R, Ntalla\u00a0I, Nutile T, Pandit A, Pauper M, Petersen ERB, Petersen LV, Piluso F, Pola\u0161ek\u00a0O, Poveda A, Pyarajan\u00a0S, Raffield LM<\/b>, Rakugi\u00a0H, Ramirez J, Rasheed A, Raven D, Rayner NW, Riveros C, Rohde R, Ruggiero D, Ruotsalainen SE, Ryan KA, Sabater-Lleal\u00a0M, Santin A, Saxena R, Scholz M, Shen B, Shi J, Shin JH, Sidore\u00a0C, Sidorenko J, Sim X, Slieker\u00a0RC, Smith AV, Smith JA, Smyth LJ, Southam L, Steinthorsdottir\u00a0V, Sun L, Takeuchi F, Taylor KD, Tayo BO, Tcheandjieu\u00a0C, Terzikhan\u00a0N, Tesolin\u00a0P, Teumer A, Theusch E, Thompson DJ, Thorleifsson G, Timmers PRHJ, Trompet\u00a0S, Turman C, Vaccargiu\u00a0S, van der Laan SW, van der Most PJ, van Klinken JB, van Setten\u00a0J, Verma SS, Verweij N, Veturi\u00a0Y, Wang CA, Wang C, Wang JS, Wang L, Wang YX, Wang Z, Warren HR, Bin Wei W, Wen W, Wheeler WA, Wickremasinghe AR, Wielscher\u00a0M, Winsvold\u00a0BS, Wong A, Wuttke M, Xia R, Yamamoto K, Yang J, Yao J, Young H, Yousri NA, Yu L, Zeng L, Zhang W, Zhang X, Zhao JH, Zhao W, Zhou W, Zimmermann ME, Zoledziewska\u00a0M, ‘t Hart LM, Adair LS, Adams HHH, Aguilar-Salinas CA, Al-Mulla F, Arnett DK, Asselbergs\u00a0FW, \u00c5svold\u00a0BO, Attia J, Banas B, Bandinelli S, Beilin LJ, Bennett DA, Bergler T, Bharadwaj D, Biino\u00a0G, Boerwinkle E, B\u00f6ger\u00a0CA, Borja JB, Bouchard C, Bowden DW, Brandslund I, Brumpton B, Buring JE, Caulfield MJ, Chambers JC, Chandak GR, Chanock\u00a0SJ, Chaturvedi N, Ida Chen YD, Chen Z, Cheng CY, Cho YS, Christensen K, Christophersen IE, Ciullo M, Cole JW, Collins FS, Concas\u00a0MP, Cooper RS, Cruz M, Cucca\u00a0F, Cutler MJ, Damrauer\u00a0SM, Dantoft TM, de Borst GJ, de Geus EJC, de Groot LCPGM, De Jager PL, de Kleijn DPV, de Silva HJ, Dedoussis\u00a0GV, den Hollander AI, Du S, Easton DF, Eckardt KU, Elders PJM, Eliassen AH, Ellinor PT, Elmst\u00e5hl\u00a0S, Erdmann J, Evans MK, Fatkin D, Feenstra B, Feitosa MF, Ferrucci L, Florez JC, Ford I, Fornage\u00a0M, Franke A, Franks PW, Freedman BI, Gieger C, Girotto\u00a0G, Golightly YM, Gonzalez-Villalpando C, Gordon-Larsen P, Grallert\u00a0H, Grant SFA, Grarup N, Griffiths L, Gudnason V, Haiman C, Hakonarson\u00a0H, Hansen T, Hartman CA, Hattersley AT, Hayward C, Heid IM, Heng CK, Hengstenberg C, Herzig KH, Hewitt AW, Hishigaki\u00a0H, Hougaard DM, Hoyng CB, Huang PL, Huang W, Huang WY, Huffman JE, Hunt SC, Hutri\u00a0N, Hveem K, Hypp\u00f6nen\u00a0E, Iacono WG, Ichihara S, Ikram MA, Isasi CR, Jarvelin\u00a0MR, Jin ZB, J\u00f6ckel\u00a0KH, Jonas JB, Joshi PK, Jousilahti\u00a0P, Jukema\u00a0JW, K\u00e4h\u00f6nen\u00a0M, Kamatani\u00a0Y, Kang KD, Kaprio\u00a0J, Kardia\u00a0SLR, Karpe F, Kato N, Kavousi\u00a0M, Kee F, Kessler T, Khera AV, Khor CC, Kiemeney\u00a0LALM, Kim BJ, Kim EK, Kim HL, Kirchhof P, Kivimaki\u00a0M, Koh WP, Koistinen HA, Kokkinos A, Kooner JS, Kooperberg\u00a0C, Kovacs P, Kraaijeveld\u00a0A, Kraft P, Krauss RM, Kumari M, Kutalik Z, Laakso M, Lange LA, Langenberg C, Launer LJ, Lee H, Lee NR, Lehtim\u00e4ki T, Lemaitre RN, Li H, Li L, Lieb W, Lin X, Lind L, Linneberg A, Liu CT, Liu J, Loeffler M, London B, Lu F, Lubitz SA, Mackey DA, Magnusson PKE, Manson JE, Marcus GM, Marques Vidal P, Martin NG, M\u00e4rz W, Matsuda F, McCarthy MI, McGarrah RW, McGue M, McKnight AJ, Medland SE, Mellstr\u00f6m\u00a0D, Metspalu\u00a0A, Mitchell BD, Mitchell P, Mook-Kanamori DO, Mori TA, Morris AD, Mucci LA, Munroe PB, Nalls MA, Nazarian S, Nelson AE, Neville MJ, Newton-Cheh C, Nielsen CS, Niinikoski\u00a0H, Nikus\u00a0K, N\u00f6then\u00a0MM, Ogunniyi A, Ohlsson C, Oldehinkel\u00a0AJ, Orozco L, Pahkala\u00a0K, Pajukanta\u00a0P, Palmer CNA, Parra EJ, Pattaro\u00a0C, Pedersen O, Pennell CE, Penninx\u00a0BWJH, Perusse L, Peters A, Peyser PA, Porteous DJ, Posthuma D, Power C, Pramstaller\u00a0PP, Province MA, Psaty\u00a0BM, Qi Q, Qu J, Rader DJ, Raitakari\u00a0OT, Rallidis\u00a0LS, Rao DC, Redline S, Reilly DF, Reiner AP, Rhee SY, Ridker\u00a0PM, Rienstra M, Ripatti S, Ritchie MD, Rivadeneira F, Roden DM, Rosendaal\u00a0FR, Rotter JI, Rudan I, Rutters F, Ryu S, Sabanayagam C, Salako B, Saleheen\u00a0D, Salomaa V, Samani NJ, Sanghera DK, Sattar N, Schmidt B, Schmidt H, Schmidt R, Schulze MB, Schunkert\u00a0H, Scott LJ, Scott RJ, Sever P, Sheu WHH, Shoemaker MB, Shu XO, Simonsick\u00a0EM, Sims M, Singleton AB, Sinner MF, Smith JG, Snieder\u00a0H, Spector TD, Spedicati\u00a0B, Stampfer MJ, Stark KJ, Strachan DP, Tabara Y, Tai ES, Tang H, Tardif JC, Thanaraj TA, T\u00f6njes\u00a0A, Tuomi T, Tuomilehto\u00a0J, Tusi\u00e9-Luna MT, van Dam RM, van der Harst P, Van der Velde N, van Duijn CM, van Schoor NM, Vitart\u00a0V, Vohl MC, V\u00f6lker U, Vollenweider P, V\u00f6lzke\u00a0H, Vrieze S, Wacher-Rodarte NH, Walker M, Wander GS, Wareham NJ, Watanabe RM, Watkins H, Weir DR, Werge TM, Widen E, Willemsen G, Willett WC, Wilson JF, Wilson PWF, Wong TY, Woo JT, Wright AF, Xu H, Yajnik\u00a0CS, Yang J, Yokota M, Yuan JM, Zeggini\u00a0E, Zemel BS, Zheng W, Zhu X, Zillikens\u00a0MC, Zonderman\u00a0AB, Zwart JA; 23andMe Research Team; DiscovEHR\u00a0(DiscovEHR\u00a0and MyCode\u00a0Community Health Initiative); eMERGE\u00a0(Electronic Medical Records and Genomics Network); GPC-UGR; PRACTICAL Consortium; Understanding Society Scientific Group; VA Million Veteran Program; Abecasis\u00a0GR, Assimes\u00a0TL, Auton A, Boehnke M, Chasman\u00a0DI, Esko T, Stefansson K, Lettre\u00a0G, Lindgren CM, Ng MCY, O’Donnell CJ, Thorsteinsdottir U, Visscher PM, Walters RG, Winkler TW, Wood AR, Deloukas\u00a0P, Frayling\u00a0TM, Justice AE, Kilpel\u00e4inen TO, Locke AE, Mohlke KL,<\/b>\u00a0North KE, Okada Y, Willer CJ, Young KL, Fatumo S, McCaffery JM, Timpson NJ, Hirschhorn JN, Sun YV, Berndt SI, Loos RJF.<\/p>\n

Nat Med. 2025 Jul 21. doi: 10.1038\/s41591-025-03827-z. Online ahead of print.<\/p>\n

PMID: 40691366<\/p>\n

 <\/p>\n

Survey of Demographics, Training, Duties, and Professional Development for Variant Scientists in Genomic Medicine.\u00a0<\/a><\/u><\/p>\n

Dickson A, Cone KR, Fortini BK, Goldstein J<\/b>, Thompson ML, Wilke MVMB, Hurst ACE, Schroeder MC, Polonis K, Bowling KM.<\/p>\n

J Mol Diagn. 2025 Jul 22:S1525-1578(25)00169-2. doi: 10.1016\/j.jmoldx.2025.06.004. Online ahead of print.<\/p>\n

PMID: 40706987<\/p>\n

 <\/p>\n

Racial differences in endometrial cancer genomics and outcomes using UNCseq<\/a><\/u>TM<\/a><\/u><\/sup>\u00a0targeted DNA sequencing.\u00a0<\/a><\/u><\/p>\n

Newton MA, Merker JD,<\/b>\u00a0Gong W, Patil S, Tan X, Cocoran DL, Pfefferle AD,<\/b>\u00a0Hayward MC, Broaddus R, Nichols HB, Olshan AF, Weissman B, Keku\u00a0TO, Bae-Jump V.<\/p>\n

Gynecol\u00a0Oncol Rep. 2025 Jun 25;60:101795. doi: 10.1016\/j.gore.2025.101795. eCollection\u00a02025 Aug.<\/p>\n

PMID: 40687919 Free PMC article.<\/b><\/p>\n

 <\/p>\n

Coordinated expression of retained introns and poison exons in renal cell carcinoma.\u00a0<\/a><\/u><\/p>\n

Mart\u00ednez JC, Zhou M, Giri G, Tsai YH, Rowley MM, Goda GA, Aleman MM, Kim WY<\/b>, Dominguez D.<\/p>\n

Cell Rep. 2025 Jul 17;44(8):115985. doi: 10.1016\/j.celrep.2025.115985. Online ahead of print.<\/p>\n

PMID:\u00a040682778<\/p>\n

 <\/p>\n

Predictors of Nodal Pathologic Complete Response After Neoadjuvant Chemotherapy in Breast Cancer.\u00a0<\/a><\/u><\/p>\n

An SJ, Thai CHNC, Agala CB, Abdou YG, Selfridge JM, Spanheimer\u00a0PM.<\/b><\/p>\n

Ann Surg Oncol. 2025 Jul 19. doi: 10.1245\/s10434-025-17906-5. Online ahead of print.<\/p>\n

PMID: 40684017<\/p>\n

 <\/p>\n

Associations of serum and bronchoalveolar immunoglobulins with lung microbiota diversity, B-cell memory phenotypes, and COPD morbidity and exacerbations.\u00a0<\/a><\/u><\/p>\n

Tejwani V, Putcha N, Woo H, Liu C, Lafon D, Alexis NE, Azar A, Barr RG, Barjaktarevic\u00a0I, Bowler RP, Comellas A, Couper DJ, Fawzy A, Han MK, Hansel NN, Kaner RJ, Krishnan JA, Marchetti N, Martinez FJ, Ohar J, O’Neal W<\/b>, Ortega VE, Paine Iii R, Pottinger TD, St\u00e4mpfli\u00a0M, Ruvuna\u00a0L, Woodruff PG, Freeman CM, Huang YJ, Curtis JL.<\/p>\n

Respir Res. 2025 Jul 18;26(1):250. doi: 10.1186\/s12931-025-03310-w.<\/p>\n

PMID:\u00a040682114 Free PMC article.<\/b><\/p>\n

 <\/p>\n

Genome-wide Gene by Sleepiness Interaction Analysis for Sleep Apnea.\u00a0<\/a><\/p>\n

Nagarajan P, Kurniansyah N, Lee J, Gharib SA, Xu Y, Zhang Y, Spitzer B, Faquih T, Zhou H, Boerwinkle E, Chen H, Gottlieb DJ, Guo X, Heard-Costa NL, Hidalgo BA, Levy D, Liu PY, Mei H, Montalvan R, Mukherjee S, North KE, O’Conner GT, Palmer LJ, Patel SR, Psaty BM, Purcell SM, Raffield LM<\/b>, Rich SS, Rotter JI, Saxena R, Smith AV, Stone KL, Zhu X; TOPMed Sleep Trait Working Group; Cade BE, Sofer T, Redline S, Wang H.<\/div>\n
Sleep. 2025 Jul 28:zsaf212. doi: 10.1093\/sleep\/zsaf212. Online ahead of print.<\/div>\n
PMID:\u00a040736211<\/div>\n
<\/div>\n
Health risks and genetic architecture of objectively measured multidimensional sleep health.\u00a0<\/a><\/div>\n
Zhang S, Zhang M, Yuan Y, Li Z, Li X<\/b>, Li X.<\/div>\n
Nat Commun. 2025 Jul 31;16(1):7026. doi: 10.1038\/s41467-025-62338-0.<\/div>\n
PMID:\u00a040745165<\/div>\n
<\/div>\n
Effect of a pay-it-forward strategy on reducing HPV vaccine delay and increasing uptake among 15- to 18-year-old girls in China: A randomized controlled trial.\u00a0<\/a><\/div>\n
Li J, Li Y, Qin C, He Y, Lu H, Xie Y, Ong JJ, Lu Y, Yang Y, Yang F, Du H, Gong W,\u00a0Zou F<\/b>, Larson HJ, Jit M, Lin L, Smith JS, Geng EH, Xu D, Tang W, Tang S, Tucker JD, Wu D.<\/div>\n
PLoS Med. 2025 Jul 31;22(7):e1004535. doi: 10.1371\/journal.pmed.1004535. Online ahead of print.<\/div>\n
PMID: 40743312<\/div>\n
<\/div>\n
Genetic risk for alcohol use disorder in relation to individual symptom criteria: Do polygenic indices provide unique information for understanding severity and heterogeneity?\u00a0<\/a><\/div>\n
Sarles YM, Lane SP, Miller AP, Wilhelmsen KC<\/b>, Gizer IR.<\/div>\n
Addiction. 2025 Jul 31. doi: 10.1111\/add.70157. Online ahead of print.<\/div>\n
PMID:\u00a040741918<\/div>\n
<\/div>\n
BCG Vaccination Potentially Modulates the Transcriptome of Infant CD4 T Cells in Addition to Age-Dependent Immune Ontogeny-Associated Changes.\u00a0<\/a><\/div>\n
Kandiyil VVK, Kang E, Coates E, Kamthunzi P, Tegha G, Hosseinipour M, Wu D, Zou F<\/b>, De Paris K.<\/div>\n
Vaccines (Basel). 2025 Jun 29;13(7):706. doi: 10.3390\/vaccines13070706.<\/div>\n
PMID: 40733683<\/div>\n
Free PMC article.<\/div>\n

 <\/p>\n","protected":false},"excerpt":{"rendered":"

Department of Genetics faculty, postdocs, students and collaborators published 39 papers during June 29th – August 2nd 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