{"id":8144,"date":"2020-03-10T08:31:02","date_gmt":"2020-03-10T12:31:02","guid":{"rendered":"https:\/\/www.med.unc.edu\/genetics\/?p=8144"},"modified":"2020-03-10T08:32:44","modified_gmt":"2020-03-10T12:32:44","slug":"department-of-genetics-publications-for-feb-23-march-7-2020","status":"publish","type":"post","link":"https:\/\/www.med.unc.edu\/genetics\/department-of-genetics-publications-for-feb-23-march-7-2020\/","title":{"rendered":"Department of Genetics Publications for Feb. 23 \u2013 March 7, 2020"},"content":{"rendered":"

\"\"<\/p>\n

Department of Genetics faculty, postdocs, students and collaborators published fourteen papers during Feb. 23 \u2013 March 7, 2020.<\/p>\n

 <\/p>\n\n\n\n\n\n\n
<\/td>\nA framework for transcriptome-wide association studies in breast cancer in diverse study populations.<\/a><\/td>\n<\/tr>\n
<\/td>\nBhattacharya A, Garc\u00eda-Closas M, Olshan AF, Perou CM<\/strong>, Troester MA, Love MI<\/strong>.<\/td>\n<\/tr>\n
<\/td>\nGenome Biol. 2020 Feb 20;21(1):42. doi: 10.1186\/s13059-020-1942-6.<\/td>\n<\/tr>\n
<\/td>\nPMID: 32079541<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

 <\/p>\n\n\n\n\n\n\n
<\/td>\nHER2-enriched subtype and pathological complete response in HER2-positive breast cancer: A systematic review and meta-analysis.<\/a><\/td>\n<\/tr>\n
<\/td>\nSchettini F, Pascual T, Conte B, Chic N, Bras\u00f3-Maristany F, Galv\u00e1n P, Mart\u00ednez O, Adamo B, Vidal M, Mu\u00f1oz M, Fern\u00e1ndez-Martinez A, Rognoni C, Griguolo G, Guarneri V, Conte PF, Locci M, Brase JC, Gonzalez-Farre B, Villagrasa P, De Placido S, Schiff R, Veeraraghavan J, Rimawi MF, Osborne CK, Pernas S, Perou CM<\/strong>, Carey LA, Prat A.<\/td>\n<\/tr>\n
<\/td>\nCancer Treat Rev. 2020 Mar;84:101965. doi: 10.1016\/j.ctrv.2020.101965. Epub 2020 Jan 17.<\/td>\n<\/tr>\n
<\/td>\nPMID: 32000054<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

 <\/p>\n\n\n\n\n\n\n
<\/td>\nDanger-associated extracellular ATP counters MDSC therapeutic efficacy in acute GVHD.<\/a><\/td>\n<\/tr>\n
<\/td>\nKoehn BH, Saha A, McDonald-Hyman C, Loschi M, Thangavelu G, Ma L, Zaiken M, Dysthe J, Krepps W, Panthera J, Hippen K, Jameson SC, Miller JS, Cooper MA, Farady CJ, Iwawaki T, Ting JP<\/strong>, Serody JS, Murphy WJ, Hill GR, Murray PJ, Bronte V, Munn DH, Zeiser R, Blazar BR.<\/td>\n<\/tr>\n
<\/td>\nBlood. 2019 Nov 7;134(19):1670-1682. doi: 10.1182\/blood.2019001950.<\/td>\n<\/tr>\n
<\/td>\nPMID: 31533918<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

 <\/p>\n\n\n\n\n\n\n
<\/td>\nInferring Regulatory Networks From Mixed Observational Data Using Directed Acyclic Graphs.<\/a><\/td>\n<\/tr>\n
<\/td>\nZhong W, Dong L, Poston TB, Darville T, Spracklen CN<\/strong>, Wu D, Mohlke KL, Li Y<\/strong>, Li Q, Zheng X.<\/td>\n<\/tr>\n
<\/td>\nFront Genet. 2020 Feb 7;11:8. doi: 10.3389\/fgene.2020.00008. eCollection 2020.<\/td>\n<\/tr>\n
<\/td>\nPMID: 32127796<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

 <\/p>\n\n\n\n\n\n\n
<\/td>\nAssessing the implications of positive genomic screening results.<\/a><\/td>\n<\/tr>\n
<\/td>\nWaltz M, Meagher KM, Henderson GE, Goddard KA, Muessig K, Berg JS<\/strong>, Weck KE<\/strong>, Cadigan RJ.<\/td>\n<\/tr>\n
<\/td>\nPer Med. 2020 Mar 3. doi: 10.2217\/pme-2019-0067. [Epub ahead of print]<\/td>\n<\/tr>\n
<\/td>\nPMID: 32125936<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

 <\/p>\n\n\n\n\n\n\n
<\/td>\nA Pan-Cancer and Polygenic Bayesian Hierarchical Model for the Effect of Somatic Mutations on Survival.<\/a><\/td>\n<\/tr>\n
<\/td>\nSamorodnitsky S, Hoadley KA<\/strong>, Lock EF.<\/td>\n<\/tr>\n
<\/td>\nCancer Inform. 2020 Feb 17;19:1176935120907399. doi: 10.1177\/1176935120907399. eCollection 2020.<\/td>\n<\/tr>\n
<\/td>\nPMID: 32116467<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

 <\/p>\n\n\n\n\n\n\n
<\/td>\nGenetic diversity and thermal performance in invasive and native populations of African fig flies.<\/a><\/td>\n<\/tr>\n
<\/td>\nComeault AA, Wang J<\/strong>, Tittes S, Isbell K, Ingley S, Hurlbert AH, Matute DR.<\/td>\n<\/tr>\n
<\/td>\nMol Biol Evol. 2020 Feb 28. pii: msaa050. doi: 10.1093\/molbev\/msaa050. [Epub ahead of print]<\/td>\n<\/tr>\n
<\/td>\nPMID: 32109281<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

 <\/p>\n\n\n\n\n\n\n
<\/td>\nBK-Polyomavirus Nephropathy with Systemic Viral Spread: Whole Genome Sequencing Data from a Fatal Case of BKPyV Infection.<\/a><\/td>\n<\/tr>\n
<\/td>\nRoy S, Mieczkowski PA<\/strong>, Weida C, Huo J, Roehrs P, Singh HK, Nickeleit V.<\/td>\n<\/tr>\n
<\/td>\nTranspl Infect Dis. 2020 Feb 23:e13269. doi: 10.1111\/tid.13269. [Epub ahead of print]<\/td>\n<\/tr>\n
<\/td>\nPMID: 32090422<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

 <\/p>\n\n\n\n\n\n\n
<\/td>\nGlanzmann thrombasthenia: genetic basis and clinical correlates.<\/a><\/td>\n<\/tr>\n
<\/td>\nPerez Botero J, Lee K,<\/strong> Branchford BR, Bray PF, Freson K, Lambert MP, Luo M, Mohan S, Ross JE, Bergmeier W, Di Paola J; ClinGen Platelet Disorder Variant Curation Expert Panel.<\/td>\n<\/tr>\n
<\/td>\nHaematologica. 2020 Mar 5. pii: haematol.2018.214239. doi: 10.3324\/haematol.2018.214239. [Epub ahead of print]<\/td>\n<\/tr>\n
<\/td>\nPMID: 32139434<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

 <\/p>\n\n\n\n\n\n\n
<\/td>\nMutation signatures specific to DNA alkylating agents in yeast and cancers.<\/a><\/td>\n<\/tr>\n
<\/td>\nSaini N, Sterling JF, Sakofsky CJ, Giacobone CK, Klimczak LJ, Burkholder AB, Malc EP, Mieczkowski PA<\/strong>, Gordenin DA.<\/td>\n<\/tr>\n
<\/td>\nNucleic Acids Res\u00a0. 2020 Mar 5. pii: gkaa150. doi: 10.1093\/nar\/gkaa150. [Epub ahead of print]<\/td>\n<\/tr>\n
<\/td>\nPMID: 32133535<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

 <\/p>\n\n\n\n\n\n\n
<\/td>\nTximeta: Reference sequence checksums for provenance identification in RNA-seq.<\/a><\/td>\n<\/tr>\n
<\/td>\nLove MI<\/strong>, Soneson C, Hickey PF, Johnson LK, Pierce NT, Shepherd L, Morgan M, Patro R.<\/td>\n<\/tr>\n
<\/td>\nPLoS Comput Biol. 2020 Feb 25;16(2):e1007664. doi: 10.1371\/journal.pcbi.1007664. [Epub ahead of print]<\/td>\n<\/tr>\n
<\/td>\nPMID: 32097405<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

 <\/p>\n\n\n\n\n\n\n
<\/td>\nExpression of E93 provides an instructive cue to control dynamic enhancer activity and chromatin accessibility during development.<\/a><\/td>\n<\/tr>\n
<\/td>\nNystrom SL, Niederhuber MJ, McKay DJ<\/strong>.<\/td>\n<\/tr>\n
<\/td>\nDevelopment. 2020 Feb 24. pii: dev.181909. doi: 10.1242\/dev.181909. [Epub ahead of print]<\/td>\n<\/tr>\n
<\/td>\nPMID: 32094114<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

 <\/p>\n\n\n\n\n\n\n
<\/td>\nAdrenomedullin Is Necessary to Resolve Hyperoxia-Induced Experimental Bronchopulmonary Dysplasia and Pulmonary Hypertension\u00a0in Mice.<\/a><\/td>\n<\/tr>\n
<\/td>\nMenon RT, Shrestha AK, Reynolds CL, Barrios R, Caron KM,<\/strong> Shivanna B.<\/td>\n<\/tr>\n
<\/td>\nAm J Pathol. 2020 Feb 20. pii: S0002-9440(20)30014-6. doi: 10.1016\/j.ajpath.2019.11.011. [Epub ahead of print]<\/td>\n<\/tr>\n
<\/td>\nPMID: 32093901<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

 <\/p>\n\n\n\n\n\n\n
<\/td>\nDawn of a New RAMPage.<\/a><\/td>\n<\/tr>\n
<\/td>\nSerafin DS, Harris NR, Nielsen NR, Mackie DI, Caron KM<\/strong>.<\/td>\n<\/tr>\n
<\/td>\nTrends Pharmacol Sci. 2020 Feb 27. pii: S0165-6147(20)30023-7. doi: 10.1016\/j.tips.2020.01.009. [Epub ahead of print] Review.<\/td>\n<\/tr>\n
<\/td>\nPMID: 32115276<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n","protected":false},"excerpt":{"rendered":"

Department of Genetics faculty, postdocs, students and collaborators published fourteen papers during Feb. 23 \u2013 March 7, 2020.<\/p>\n","protected":false},"author":28418,"featured_media":6539,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"footnotes":"","_links_to":"","_links_to_target":""},"categories":[2],"tags":[49,78,62,128,56,34,81,59,82,36,45,30,64,46,197,148],"class_list":["post-8144","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-news","tag-berg","tag-caron","tag-hoadley","tag-lee","tag-li","tag-love","tag-malc","tag-mckay","tag-mieczkowski","tag-mohlke","tag-perou","tag-publications","tag-spracklen","tag-ting","tag-wang","tag-weck","odd"],"acf":[],"yoast_head":"\nDepartment of Genetics Publications for Feb. 23 \u2013 March 7, 2020 | Department of Genetics<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, 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