{"id":3189,"date":"2020-06-19T10:22:46","date_gmt":"2020-06-19T14:22:46","guid":{"rendered":"https:\/\/www.med.unc.edu\/genomics\/?page_id=3189"},"modified":"2020-08-21T16:43:45","modified_gmt":"2020-08-21T20:43:45","slug":"publications","status":"publish","type":"page","link":"https:\/\/www.med.unc.edu\/genomics\/about\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"<p>You will able to find the following here:<\/p>\n<ul>\n<li><a href=\"https:\/\/www.med.unc.edu\/genomics\/about\/faqs\/\">Acknowledgement<\/a> information for all publications, talk and poster can be found on the FAQs Tab, Grants section.<\/li>\n<li>Publications, please see a recent selection of publications in which the HTSF has assisted investigators with their work. <\/li>\n<ul>\n<ol>\n<li>\n<a href=\"https:\/\/www.med.unc.edu\/genomics\/wp-content\/uploads\/sites\/708\/2020\/07\/Gregory-JBT-July-2020.pdf\" target=\"blank\" rel=\"noopener noreferrer\">Building a Quality Management System in a Core Facility: A Genomics Core Case Study.<\/a><br \/>\nGregory, Christopher W.  Journal of Biomolecular Techniques, 2020 Jul 20; 31 (2): 57-65\n<\/li>\n<li>\n<a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/31992186\/\">Unlocking the transcriptomic potential of formalin-fixed paraffin embedded clinical tissues: comparison of gene expression profiling approaches.<\/a><\/p>\n<p>Turnbull AK, Selli C, Martinez-Perez C, Fernando A, Renshaw L, Keys J, Figueroa JD, He X, Tanioka M, Munro AF, Murphy L, Fawkes A, Clark R, Coutts A, Perou CM, Carey LA, Dixon JM, Sims AH.<br \/>\nBMC Bioinformatics. 2020 Jan 28;21(1):30. doi: 10.1186\/s12859-020-3365-5.<br \/>\nPMID: 31992186 [PubMed &#8211; indexed for MEDLINE] Free PMC Article <\/p>\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/?linkname=pubmed_pubmed&#038;from_uid=31992186\">Similar articles <\/a>\n<\/li>\n<li>\n<a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/31384706\/\">Use of high throughput amplicon sequencing and ethidium monoazide dye to track microbiota changes in an equol-producing menopausal woman receiving a long-term isoflavones treatment.<\/a><\/p>\n<p>Guadamuro L, Azc\u00e1rate-Peril MA, Tojo R, Mayo B, Delgado S.<br \/>\nAIMS Microbiol. 2019 Mar 22;5(1):102-116. doi: 10.3934\/microbiol.2019.1.102. eCollection 2019.<br \/>\nPMID: 31384706 [PubMed] Free PMC Article <\/p>\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/?linkname=pubmed_pubmed&#038;from_uid=31384706\">Similar articles<\/a>\n<\/li>\n<li>\n<a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/31059501\/\">Hindgut microbiota in laboratory-reared and wild Triatoma infestans.<\/a><\/p>\n<p>Waltmann A, Willcox AC, Balasubramanian S, Borrini Mayori K, Mendoza Guerrero S, Salazar Sanchez RS, Roach J, Condori Pino C, Gilman RH, Bern C, Juliano JJ, Levy MZ, Meshnick SR, Bowman NM.<br \/>\nPLoS Negl Trop Dis. 2019 May 6;13(5):e0007383. doi: 10.1371\/journal.pntd.0007383. eCollection 2019 May.<br \/>\nPMID: 31059501 [PubMed &#8211; indexed for MEDLINE] Free PMC Article <\/p>\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/?linkname=pubmed_pubmed&#038;from_uid=31059501\">Similar articles <\/a>\n<\/li>\n<li>\n<a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/30518559\/\">Dengue type 1 viruses circulating in humans are highly infectious and poorly neutralized by human antibodies.<\/a><\/p>\n<p>Raut R, Corbett KS, Tennekoon RN, Premawansa S, Wijewickrama A, Premawansa G, Mieczkowski P, R\u00fcckert C, Ebel GD, De Silva AD, de Silva AM.<br \/>\nProc Natl Acad Sci U S A. 2019 Jan 2;116(1):227-232. doi: 10.1073\/pnas.1812055115. Epub 2018 Dec 5.<br \/>\nPMID: 30518559 [PubMed &#8211; indexed for MEDLINE] Free PMC Article <\/p>\n<p><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed?linkname=pubmed_pubmed&#038;from_uid=30518559\">Similar articles <\/a>\n<\/li>\n<li>\n<a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/30138447\/\">Comparative evaluation of a new magnetic bead-based DNA extraction method from fecal samples for downstream next-generation 16S rRNA gene sequencing.<\/a><\/p>\n<p>McGaughey KD, Yilmaz-Swenson T, Elsayed NM, Cruz DA, Rodriguez RR, Kritzer MD, Peterchev AV, Gray M, Lewis SR, Roach J, Wetsel WC, Williamson DE.<br \/>\nPLoS One. 2018 Aug 23;13(8):e0202858. doi: 10.1371\/journal.pone.0202858. eCollection 2018. Erratum in: PLoS One. 2019 Feb 19;14(2):e0212712.<br \/>\nPMID: 30138447 [PubMed &#8211; indexed for MEDLINE] Free PMC Article <\/p>\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/?linkname=pubmed_pubmed&#038;from_uid=30138447\">Similar articles <\/a>\n<\/li>\n<li>\n<a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/30067980\/\">A Mutation in the Borcs7 Subunit of the Lysosome Regulatory BORC Complex Results in Motor Deficits and Dystrophic Axonopathy in Mice.<\/a><\/p>\n<p>Snouwaert JN, Church RJ, Jania L, Nguyen M, Wheeler ML, Saintsing A, Mieczkowski P, Manuel de Villena FP, Armao D, Moy SS, Lorenzo DN, Koller BH.<br \/>\nCell Rep. 2018 Jul 31;24(5):1254-1265. doi: 10.1016\/j.celrep.2018.06.118.<br \/>\nPMID: 30067980 [PubMed &#8211; indexed for MEDLINE] Free Article <\/p>\n<p><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed?linkname=pubmed_pubmed&#038;from_uid=30067980\">Similar articles <\/a>\n<\/li>\n<li>\n<a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/29977002\/\">Reuse of malaria rapid diagnostic tests for amplicon deep sequencing to estimate Plasmodium falciparum transmission intensity in western Uganda.<\/a><\/p>\n<p>Boyce RM, Hathaway N, Fulton T, Reyes R, Matte M, Ntaro M, Mulogo E, Waltmann A, Bailey JA, Siedner MJ, Juliano JJ.<br \/>\nSci Rep. 2018 Jul 5;8(1):10159. doi: 10.1038\/s41598-018-28534-3.<br \/>\nPMID: 29977002 [PubMed &#8211; indexed for MEDLINE] Free PMC Article <\/p>\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/?linkname=pubmed_pubmed&#038;from_uid=29977002\">Similar articles <\/a>\n<\/li>\n<li>\n<a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/29970461\/\">RIG-I Detects Kaposi&#8217;s Sarcoma-Associated Herpesvirus Transcripts in a RNA Polymerase III-Independent Manner.<\/a><\/p>\n<p>Zhang Y, Dittmer DP, Mieczkowski PA, Host KM, Fusco WG, Duncan JA, Damania B.<br \/>\nmBio. 2018 Jul 3;9(4). pii: e00823-18. doi: 10.1128\/mBio.00823-18.<br \/>\nPMID: 29970461 [PubMed &#8211; indexed for MEDLINE] Free PMC Article <\/p>\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/?linkname=pubmed_pubmed&#038;from_uid=29970461\">Similar articles <\/a>\n<\/li>\n<li>\n<a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/29343217\/\">Ceratocystis cacaofunesta genome analysis reveals a large expansion of extracellular phosphatidylinositol-specific phospholipase-C genes (PI-PLC).<\/a><\/p>\n<p>Molano EPL, Cabrera OG, Jose J, do Nascimento LC, Carazzolle MF, Teixeira PJPL, Alvarez JC, Tiburcio RA, Tokimatu Filho PM, de Lima GMA, Guido RVC, Corr\u00eaa TLR, Leme AFP, Mieczkowski P, Pereira GAG.<br \/>\nBMC Genomics. 2018 Jan 17;19(1):58. doi: 10.1186\/s12864-018-4440-4.<br \/>\nPMID: 29343217 [PubMed &#8211; indexed for MEDLINE] Free PMC Article <\/p>\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/?linkname=pubmed_pubmed&#038;from_uid=29343217\">Similar articles<\/a>\n<\/li>\n<li>\n<a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/28945738\/\">Formation of a TBX20-CASZ1 protein complex is protective against dilated cardiomyopathy and critical for cardiac homeostasis.<\/a><\/p>\n<p>Kennedy L, Kaltenbrun E, Greco TM, Temple B, Herring LE, Cristea IM, Conlon FL.<br \/>\nPLoS Genet. 2017 Sep 25;13(9):e1007011. doi: 10.1371\/journal.pgen.1007011. eCollection 2017 Sep.<br \/>\nPMID: 28945738 [PubMed &#8211; indexed for MEDLINE] Free PMC Article <\/p>\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/?linkname=pubmed_pubmed&#038;from_uid=28945738\">Similar articles<\/a>\n<\/li>\n<li>\n<a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/28903732\/\">A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome.<\/a><\/p>\n<p>Allali I, Arnold JW, Roach J, Cadenas MB, Butz N, Hassan HM, Koci M, Ballou A, Mendoza M, Ali R, Azcarate-Peril MA.<br \/>\nBMC Microbiol. 2017 Sep 13;17(1):194. doi: 10.1186\/s12866-017-1101-8.<br \/>\nPMID: 28903732 [PubMed &#8211; indexed for MEDLINE] Free PMC Article <\/p>\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/?linkname=pubmed_pubmed&#038;from_uid=28903732\">Similar articles <\/a><\/p>\n<li>\n<\/li>\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/28583119\/\">Surveillance for sulfadoxine-pyrimethamine resistant malaria parasites in the Lake and Southern Zones, Tanzania, using pooling and next-generation sequencing.<\/a><\/p>\n<p>Ngondi JM, Ishengoma DS, Doctor SM, Thwai KL, Keeler C, Mkude S, Munishi OM, Willilo RA, Lalji S, Kaspar N, Kitojo C, Paxton LA, Hathaway NJ, Bailey JA, Juliano JJ, Meshnick SR, Gutman J.<br \/>\nMalar J. 2017 Jun 5;16(1):236. doi: 10.1186\/s12936-017-1886-9.<br \/>\nPMID: 28583119 [PubMed &#8211; indexed for MEDLINE] Free PMC Article <\/p>\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/?linkname=pubmed_pubmed&#038;from_uid=28583119\">Similar articles <\/a>\n<\/li>\n<li>\n<a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/28376087\/\">Elucidation of the calcineurin-Crz1 stress response transcriptional network in the human fungal pathogen Cryptococcus neoformans.<\/a><\/p>\n<p>Chow EW, Clancey SA, Billmyre RB, Averette AF, Granek JA, Mieczkowski P, Cardenas ME, Heitman J.<br \/>\nPLoS Genet. 2017 Apr 4;13(4):e1006667. doi: 10.1371\/journal.pgen.1006667. eCollection 2017 Apr.<br \/>\nPMID: 28376087 [PubMed &#8211; indexed for MEDLINE] Free PMC Article <\/p>\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/?linkname=pubmed_pubmed&#038;from_uid=28376087\">Similar articles <\/a>\n<\/li>\n<li>\n<a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/27426971\/\">Emerging Technologies for Gut Microbiome Research.<\/a><\/p>\n<p>Arnold JW, Roach J, Azcarate-Peril MA.<br \/>\nTrends Microbiol. 2016 Nov;24(11):887-901. doi: 10.1016\/j.tim.2016.06.008. Epub 2016 Jul 15. Review.<br \/>\nPMID: 27426971 [PubMed &#8211; indexed for MEDLINE] Free PMC Article <\/p>\n<p><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed?linkname=pubmed_pubmed&#038;from_uid=27426971\">Similar articles <\/a>\n<\/li>\n<li>\n<a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/26186461\/\">Cavitation Enhancing Nanodroplets Mediate Efficient DNA Fragmentation in a Bench Top Ultrasonic Water Bath.<\/a><\/p>\n<p>Kasoji SK, Pattenden SG, Malc EP, Jayakody CN, Tsuruta JK, Mieczkowski PA, Janzen WP, Dayton PA.<br \/>\nPLoS One. 2015 Jul 17;10(7):e0133014. doi: 10.1371\/journal.pone.0133014. eCollection 2015.<br \/>\nPMID: 26186461 [PubMed &#8211; indexed for MEDLINE] Free PMC Article <\/p>\n<p><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed?linkname=pubmed_pubmed&#038;from_uid=26186461\">Similar articles <\/a>\n<\/li>\n<li>\n<a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/25906920\/\">Comparison of Bacterial Community Composition of Primary and Persistent Endodontic Infections Using Pyrosequencing.<\/a><\/p>\n<p>Tzanetakis GN, Azcarate-Peril MA, Zachaki S, Panopoulos P, Kontakiotis EG, Madianos PN, Divaris K.<br \/>\nJ Endod. 2015 Aug;41(8):1226-33. doi: 10.1016\/j.joen.2015.03.010. Epub 2015 Apr 21.<br \/>\nPMID: 25906920 [PubMed &#8211; indexed for MEDLINE] Free PMC Article <\/p>\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/?linkname=pubmed_pubmed&#038;from_uid=25906920\">Similar articles<\/a>\n<\/li>\n<li>\n<a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/25622295\/\">Tracking replication enzymology in vivo by genome-wide mapping of ribonucleotide incorporation.<\/a><\/p>\n<p>Clausen AR, Lujan SA, Burkholder AB, Orebaugh CD, Williams JS, Clausen MF, Malc EP, Mieczkowski PA, Fargo DC, Smith DJ, Kunkel TA.<br \/>\nNat Struct Mol Biol. 2015 Mar;22(3):185-91. doi: 10.1038\/nsmb.2957. Epub 2015 Jan 26.<br \/>\nPMID: 25622295 [PubMed &#8211; indexed for MEDLINE] Free PMC Article <\/p>\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/?linkname=pubmed_pubmed&#038;from_uid=25622295\">Similar articles<\/a>\n<\/li>\n<li>\n<a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/25503976\/\">Unisexual reproduction drives meiotic recombination and phenotypic and karyotypic plasticity in Cryptococcus neoformans.<\/a><\/p>\n<p>Sun S, Billmyre RB, Mieczkowski PA, Heitman J.<br \/>\nPLoS Genet. 2014 Dec 11;10(12):e1004849. doi: 10.1371\/journal.pgen.1004849. eCollection 2014 Dec.<br \/>\nPMID: 25503976 [PubMed &#8211; indexed for MEDLINE] Free PMC Article <\/p>\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/?linkname=pubmed_pubmed&#038;from_uid=25503976\">Similar articles<\/a>\n<\/li>\n<li>\n<a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/25149069\/\">MT-Toolbox: improved amplicon sequencing using molecule tags.<\/a><\/p>\n<p>Yourstone SM, Lundberg DS, Dangl JL, Jones CD.<br \/>\nBMC Bioinformatics. 2014 Aug 22;15:284. doi: 10.1186\/1471-2105-15-284.<br \/>\nPMID: 25149069 [PubMed &#8211; indexed for MEDLINE] Free PMC Article <\/p>\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/?linkname=pubmed_pubmed&#038;from_uid=25149069\">Similar articles<\/a>\n<\/li>\n<li>\n<a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/25079329\/\">Antifungal drug resistance evoked via RNAi-dependent epimutations.<\/a><\/p>\n<p>Calo S, Shertz-Wall C, Lee SC, Bastidas RJ, Nicol\u00e1s FE, Granek JA, Mieczkowski P, Torres-Mart\u00ednez S, Ruiz-V\u00e1zquez RM, Cardenas ME, Heitman J.<br \/>\nNature. 2014 Sep 25;513(7519):555-8. doi: 10.1038\/nature13575. Epub 2014 Jul 27.<br \/>\nPMID: 25079329 [PubMed &#8211; indexed for MEDLINE] Free PMC Article <\/p>\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/?linkname=pubmed_pubmed&#038;from_uid=25079329\">Similar articles <\/a>\n<\/li>\n<\/ol>\n","protected":false},"excerpt":{"rendered":"<p>You will able to find the following here: Acknowledgement information for all publications, talk and poster can be found on the FAQs Tab, Grants section. Publications, please see a recent selection of publications in which the HTSF has assisted investigators with their work. Building a Quality Management System in a Core Facility: A Genomics Core &hellip; <a href=\"https:\/\/www.med.unc.edu\/genomics\/about\/publications\/\" aria-label=\"Read more about Publications\">Read more<\/a><\/p>\n","protected":false},"author":64010,"featured_media":0,"parent":2981,"menu_order":8,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"layout":"","cellInformation":"","apiCallInformation":"","footnotes":"","_links_to":"","_links_to_target":""},"class_list":["post-3189","page","type-page","status-publish","hentry","odd"],"acf":[],"_links_to":[],"_links_to_target":[],"_links":{"self":[{"href":"https:\/\/www.med.unc.edu\/genomics\/wp-json\/wp\/v2\/pages\/3189","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.med.unc.edu\/genomics\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.med.unc.edu\/genomics\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.med.unc.edu\/genomics\/wp-json\/wp\/v2\/users\/64010"}],"replies":[{"embeddable":true,"href":"https:\/\/www.med.unc.edu\/genomics\/wp-json\/wp\/v2\/comments?post=3189"}],"version-history":[{"count":0,"href":"https:\/\/www.med.unc.edu\/genomics\/wp-json\/wp\/v2\/pages\/3189\/revisions"}],"up":[{"embeddable":true,"href":"https:\/\/www.med.unc.edu\/genomics\/wp-json\/wp\/v2\/pages\/2981"}],"wp:attachment":[{"href":"https:\/\/www.med.unc.edu\/genomics\/wp-json\/wp\/v2\/media?parent=3189"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}