{"id":2291,"date":"2023-11-03T16:54:34","date_gmt":"2023-11-03T20:54:34","guid":{"rendered":"https:\/\/www.med.unc.edu\/microscopy\/?page_id=2291"},"modified":"2025-09-30T07:32:13","modified_gmt":"2025-09-30T11:32:13","slug":"image-analysis","status":"publish","type":"page","link":"https:\/\/www.med.unc.edu\/microscopy\/image-analysis\/","title":{"rendered":"Image Analysis"},"content":{"rendered":"<h2>How we will help you<\/h2>\n<p>At MSL we will maximize your chances of success by:<\/p>\n<ul>\n<li><strong>Consulting<\/strong> with you about your image analysis options.<\/li>\n<li><strong>Developing<\/strong> optimal image analysis workflows in <a href=\"https:\/\/fiji.sc\/\">FIJI<\/a>, <a href=\"https:\/\/imaris.oxinst.com\/\">Imaris<\/a>, <a href=\"https:\/\/www.syglass.io\/\">SyGlass<\/a> and <a href=\"https:\/\/mediacy.com\/image-pro\/autoquant-deconvolution\/\">Autoquant<\/a>. This includes writing macros to automate analysis steps.<\/li>\n<li><strong>Training you<\/strong> to execute those workflows. We can record training sessions so you can review them afterwards.<\/li>\n<\/ul>\n<p>Please <a href=\"mailto:msl@med.unc.edu\">contact us<\/a> as early as possible in your project.<\/p>\n<hr class=\" rule-thick osc-rule\" \/>\n<h2>Analysis workstation &#8211; &#8220;Minerva2&#8221;<\/h2>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"alignnone size-full wp-image-2975\" src=\"https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2023\/11\/Minerva-workstation.jpeg\" alt=\"\" width=\"800\" height=\"358\" srcset=\"https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2023\/11\/Minerva-workstation.jpeg 800w, https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2023\/11\/Minerva-workstation-300x134.jpeg 300w, https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2023\/11\/Minerva-workstation-768x344.jpeg 768w, https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2023\/11\/Minerva-workstation-600x269.jpeg 600w\" sizes=\"auto, (max-width: 800px) 100vw, 800px\" \/><\/p>\n<p>A powerful computer on which the software described below is installed, which can be used in person or remotely. We provide temporary storage for data being analyzed on this workstation and on our dedicated server. Note that VR software (Syglass) and hardware can only be used in person.<\/p>\n<a class=\"btn btn-default btn-lg  oscitas-bootstrap-container\" target=\"_blank\" href=\"https:\/\/uncch.ilab.agilent.com\/schedules\/311060#\/schedule\"><i class=\"fa-solid fa-calendar-days\" ><\/i> Calendar<\/a>\n<a class=\"btn btn-default btn-lg  oscitas-bootstrap-container\" target=\"_blank\" href=\"https:\/\/www.med.unc.edu\/microscopy\/image\/how-to-use-msls-analysis-workstation-minerva\/\"><i class=\"fa-solid fa-list-ul\" ><\/i> Usage instructions<\/a>\n<a class=\"btn btn-default btn-lg  oscitas-bootstrap-container\" target=\"_blank\" href=\"https:\/\/www.med.unc.edu\/microscopy\/image\/remote-access-to-minerva\/\"><i class=\"fa-solid fa-list-ul\" ><\/i> Remote access instructions<\/a>\n<a class=\"btn btn-default btn-lg  oscitas-bootstrap-container\" target=\"_blank\" href=\"https:\/\/www.med.unc.edu\/microscopy\/image\/how-to-access-the-msl-data-server\/\"><i class=\"fa-solid fa-list-ul\" ><\/i> MSL server instructions<\/a>\n<p>&nbsp;<\/p>\n<div role=\"tablist\" class=\"panel-group yourcustomclass oscitas-bootstrap-container\" id=\"unc-accordion-0\">\n\n<div class=\"panel panel-default oscitas-bootstrap-container\">\n\n    <div id=\"panel-heading-details-0-0\" class=\"panel-heading oscitas-bootstrap-container\" role=\"tab\">\n\n        <h3 class=\"panel-title oscitas-bootstrap-container\">\n\n            <button class=\"accordion-toggle oscitas-bootstrap-container collapsed\" \n                id = \"button-details-0-0\"\n                data-toggle=\"collapse\"\n                data-parent=\"#unc-accordion-0\"    \n                aria-controls=\"#details-0-0\"  \n                aria-expanded=\"false\" \n                href=\"#details-0-0\">\n                Minerva Analysis Workstation Specifications (click to expand)            <\/button>\n\n        <\/h3>\n\n    <\/div>\n\n    <div id=\"details-0-0\" class=\"panel-collapse collapse  oscitas-bootstrap-container\">\n\n        <div class=\"panel-body oscitas-bootstrap-container\">\n<p><strong><i>CPU<\/i>:<\/strong> AMD Ryzen Threadripper PRO 7975WX 4 GHz 32 cores<\/p>\n<p><strong><i>RAM<\/i>:<\/strong> 768 GB<\/p>\n<p><strong><i>GPU<\/i>:<\/strong> NVIDIA RTX 6000 Ada 48 GB<\/p>\n<p><strong><i>Storage<\/i>:<\/strong><\/p>\n<ul>\n<li>2 TB NVME SSD for system<\/li>\n<li>8 TB NVME SSD for cache<\/li>\n<li>4 x 8TB in RAID0 array using <span class=\"fontstyle0\">Asus HYPER M.2 X16 Gen 4 Card<\/span><\/li>\n<li>IcyDock Tough Armor 4 Bay 2.5&#8243; SATA HDD &amp; SSD for hot swap drives. More on this option <a href=\"https:\/\/www.med.unc.edu\/microscopy\/image\/hot-swap-drive-recommendations\/\">here<\/a>.<\/li>\n<\/ul>\n<p><strong><i>Network<\/i>:<\/strong> Intel Converged 10 Gb Network Adapter X540-T2<\/p>\n<p><em><strong>Virtual reality:<\/strong><\/em> Meta Quest 3<\/p>\n<p><em><strong>Mouse:<\/strong><\/em> Logitech MX Master with 2 scroll wheels (used for indpendent zooming and slicing functions in Imaris)<\/p>\n<\/div>\n\n    <\/div>\n        \n<\/div>\n<\/div>\n<hr class=\" rule-thick osc-rule\" \/>\n<h2>Software<\/h2>\n<p>We provide support in the following four softwares packages and can install other software on our analysis workstation if needed (MATLAB, Python, cellpose, CellProfiler, QuPath, etc).<br \/>\nYou can receive full support from <a href=\"mailto:pablo_ariel@med.unc.edu\">Pablo<\/a> for Imaris, Auotquant and FIJI. For Imaris, you can also reach out to the <a href=\"mailto:ussupport_imaris@andor.com\">Imaris support team<\/a>, because we maintain an up-to-date service contract (though we recommend you contact Pablo first, for a faster response).<\/p>\n<div class=\"panel panel-info  oscitas-bootstrap-container\">\n<div class=\"panel-heading oscitas-bootstrap-container\">\n<h3><a href=\"https:\/\/imaris.oxinst.com\/\">Imaris<\/a><\/h3>\n<\/div>\n<div class=\"panel-body oscitas-bootstrap-container\">\n<h4>Multidimensional visualization and analysis software<\/h4>\n<p>Free Imaris Viewer can be used for visualization and snapshots.<br \/>\nFull version available at MSL can be used for visualization, snapshots, movies and analysis.<a class=\"btn btn-default btn-lg  oscitas-bootstrap-container\" target=\"_blank\" href=\"https:\/\/imaris.oxinst.com\/imaris-viewer\"><i class=\"fa-solid fa-download\" ><\/i> Download Imaris Viewer<\/a>\n<a class=\"btn btn-default btn-lg  oscitas-bootstrap-container\" target=\"_blank\" href=\"https:\/\/www.youtube.com\/watch?v=kC8bNWKyHvc\"><i class=\"fa-solid fa-film\" ><\/i> MSL's Imaris Viewer tutorial<\/a>\n<a class=\"btn btn-default btn-lg  oscitas-bootstrap-container\" target=\"_blank\" href=\"https:\/\/youtu.be\/zIQXvM10H18?si=pA0pio8DNysKD273\"><i class=\"fa-solid fa-film\" ><\/i> MSL's Imaris Stitcher tutorial<\/a>\n<a class=\"btn btn-default btn-lg  oscitas-bootstrap-container\" target=\"_blank\" href=\"https:\/\/imaris.oxinst.com\/homeschool\"><i class=\"fa-solid fa-film\" ><\/i> Imaris Homeschool analysis tutorials<\/a>\n<\/div>\n<\/div>\n<div class=\"panel panel-info  oscitas-bootstrap-container\">\n<div class=\"panel-heading oscitas-bootstrap-container\">\n<h3><a href=\"https:\/\/mediacy.com\/image-pro\/autoquant-deconvolution\/\">Autoquant<\/a><\/h3>\n<\/div>\n<div class=\"panel-body oscitas-bootstrap-container\">\n<h4>Deconvolution of 3D datasets<\/h4>\n<a class=\"btn btn-default btn-lg  oscitas-bootstrap-container\" target=\"_blank\" href=\"https:\/\/youtu.be\/UtMGLi6a6Bs?si=e2iESe9jIekhNNE7\"><i class=\"fa-solid fa-film\" ><\/i> MSL's Autoquant tutorial<\/a>\n<\/div>\n<\/div>\n<div class=\"panel panel-info  oscitas-bootstrap-container\">\n<div class=\"panel-heading oscitas-bootstrap-container\">\n<h3><a href=\"https:\/\/www.syglass.io\/\">Syglass<\/a><\/h3>\n<\/div>\n<div class=\"panel-body oscitas-bootstrap-container\">\n<h4>Virtual reality and analysis software<\/h4>\n<p>Free SyGlass View allows visualization (VR headset required).<br \/>\nFull version available at MSL can be used for visualization, snapshots, movies and analysis.<\/p>\n<a class=\"btn btn-default btn-lg  oscitas-bootstrap-container\" target=\"_blank\" href=\"https:\/\/syglassview.s3.us-east-2.amazonaws.com\/syGlassViewInstaller_v1_1_0.exe\"><i class=\"fa-solid fa-download\" ><\/i> Download SyGlass View<\/a>\n<a class=\"btn btn-default btn-lg  oscitas-bootstrap-container\" target=\"_blank\" href=\"https:\/\/www.syglass.io\/academy\"><i class=\"fa-solid fa-film\" ><\/i> Syglass tutorials<\/a>\n<\/div>\n<\/div>\n<div class=\"panel panel-info  oscitas-bootstrap-container\">\n<div class=\"panel-heading oscitas-bootstrap-container\">\n<h3><a href=\"https:\/\/fiji.sc\/\">FIJI<\/a><\/h3>\n<\/div>\n<div class=\"panel-body oscitas-bootstrap-container\">\n<h4>Free, open-source software for image analysis<\/h4>\n<a class=\"btn btn-default btn-lg  oscitas-bootstrap-container\" target=\"_blank\" href=\"https:\/\/fiji.sc\/\"><i class=\"fa-solid fa-download\" ><\/i> Download FIJI<\/a>\n<a class=\"btn btn-default btn-lg  oscitas-bootstrap-container\" target=\"_blank\" href=\"https:\/\/www.youtube.com\/watch?v=DGVZ8FqCXds\"><i class=\"fa-solid fa-film\" ><\/i> MSL's Basic FIJI tutorial<\/a>\n<a class=\"btn btn-default btn-lg  oscitas-bootstrap-container\" target=\"_blank\" href=\"https:\/\/forum.image.sc\/\"><i class=\"fa-solid fa-users\" ><\/i> Image.sc community forum<\/a>\n<\/div>\n<\/div>\n<hr class=\" rule-thick osc-rule\" \/>\n<h2>Collaborations with our users<\/h2>\n<div class = \"alert alert-info  oscitas-bootstrap-container\">\n<div class=\"row  oscitas-bootstrap-container\">\n<div class=\"col-lg-4 col-md-4 col-xs-12 col-sm-12 oscitas-bootstrap-container\">\n<img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-3771 size-medium\" src=\"https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2024\/12\/Vaziri-lab-collaboration-300x197.png\" alt=\"\" width=\"300\" height=\"197\" srcset=\"https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2024\/12\/Vaziri-lab-collaboration-300x197.png 300w, https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2024\/12\/Vaziri-lab-collaboration-768x505.png 768w, https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2024\/12\/Vaziri-lab-collaboration-600x394.png 600w, https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2024\/12\/Vaziri-lab-collaboration.png 861w\" sizes=\"auto, (max-width: 300px) 100vw, 300px\" \/><\/div>\n<div class=\"col-lg-8 col-md-8 col-xs-12 col-sm-12 oscitas-bootstrap-container\">\n<p><strong>Enrichment of 53BP1 in \u03b3H2AX puncta in nuclei<br \/>\n<\/strong><\/p>\n<ul>\n<li>Data acquired on our Andor Dragonfly spinning disk confocal.<\/li>\n<li>Collaboration with Yang Yang, in the <a href=\"https:\/\/www.med.unc.edu\/vazirilab\/\" target=\"_blank\" rel=\"noopener\">Cyrus Vaziri lab<\/a>.<\/li>\n<\/ul>\n<a class=\"btn btn-default btn-lg  oscitas-bootstrap-container\" target=\"_blank\" href=\"https:\/\/doi.org\/10.1093\/nar\/gkae918\"><i class=\"fa-solid fa-microscope\" ><\/i> Read the paper<\/a>\n<\/div>\n<\/div>\n<\/div>\n<div class = \"alert alert-info  oscitas-bootstrap-container\">\n<div class=\"row  oscitas-bootstrap-container\">\n<div class=\"col-lg-4 col-md-4 col-xs-12 col-sm-12 oscitas-bootstrap-container\">\n<img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-3731\" src=\"https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2024\/07\/website-Burclaff-paper-2024-864x1024.png\" alt=\"Top: Microscopy image with a nuclear and a cell-cycling fluroescence reporter. Bottom: fluorescence intensity traces for nuclear and cell cycling reporters allow clear delineation of cell cycle phases.\" width=\"325\" height=\"384\" srcset=\"https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2024\/07\/website-Burclaff-paper-2024-864x1024.png 864w, https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2024\/07\/website-Burclaff-paper-2024-253x300.png 253w, https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2024\/07\/website-Burclaff-paper-2024-768x910.png 768w, https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2024\/07\/website-Burclaff-paper-2024-600x711.png 600w, https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2024\/07\/website-Burclaff-paper-2024.png 981w\" sizes=\"auto, (max-width: 325px) 100vw, 325px\" \/><\/div>\n<div class=\"col-lg-8 col-md-8 col-xs-12 col-sm-12 oscitas-bootstrap-container\">\n<p><strong>Cell cycle phase lengths in primary human intestinal epithelial cells <\/strong><\/p>\n<ul>\n<li>Data acquired on our Andor Dragonfly spinning disk confocal.<\/li>\n<li>Collaboration with Joseph Burclaff, in the <a href=\"https:\/\/bme.unc.edu\/research-lab\/magness-lab\/\" target=\"_blank\" rel=\"noopener\">Scott Magness lab<\/a>.<\/li>\n<\/ul>\n<a class=\"btn btn-default btn-lg  oscitas-bootstrap-container\" target=\"_blank\" href=\"https:\/\/doi.org\/10.1038\/s41598-024-66042-9\"><i class=\"fa-solid fa-microscope\" ><\/i> Read the paper<\/a>\n<\/div>\n<\/div>\n<\/div>\n<div class = \"alert alert-info  oscitas-bootstrap-container\">\n<div class=\"row  oscitas-bootstrap-container\">\n<div class=\"col-lg-4 col-md-4 col-xs-12 col-sm-12 oscitas-bootstrap-container\">\n<img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-2850 size-full\" src=\"https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2024\/02\/Cardiac-physiology-scaled-1.jpg\" alt=\"\" width=\"305\" height=\"435\" \/><\/div>\n<div class=\"col-lg-8 col-md-8 col-xs-12 col-sm-12 oscitas-bootstrap-container\">\n<p><strong>Voltage, calcium ions and contraction kinetics measured simultaneously, at 0.8kHz, in beating cardiomyocytes<\/strong><\/p>\n<ul>\n<li>Data acquired on our Zeiss LSM900 laser scanning confocal.<\/li>\n<li>Collaboration with Ike Emerson, in <a href=\"https:\/\/www.conlon-lab.com\/\">Frank Conlon&#8217;s lab<\/a>.<\/li>\n<\/ul>\n<a class=\"btn btn-default btn-lg  oscitas-bootstrap-container\" target=\"_blank\" href=\"https:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC10743987\/\"><i class=\"fa-solid fa-microscope\" ><\/i> Read the paper<\/a>\n<\/div>\n<\/div>\n<\/div>\n<div class = \"alert alert-info  oscitas-bootstrap-container\">\n<div class=\"row  oscitas-bootstrap-container\">\n<div class=\"col-lg-4 col-md-4 col-xs-12 col-sm-12 oscitas-bootstrap-container\">\n<img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-2850 size-full\" src=\"https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2023\/11\/Hutson-et-al-2021-paper-graphical-abstract.jpg\" alt=\"\" width=\"640\" height=\"845\" srcset=\"https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2023\/11\/Hutson-et-al-2021-paper-graphical-abstract.jpg 640w, https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2023\/11\/Hutson-et-al-2021-paper-graphical-abstract-227x300.jpg 227w, https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2023\/11\/Hutson-et-al-2021-paper-graphical-abstract-600x792.jpg 600w\" sizes=\"auto, (max-width: 640px) 100vw, 640px\" \/><\/div>\n<div class=\"col-lg-8 col-md-8 col-xs-12 col-sm-12 oscitas-bootstrap-container\">\n<p><strong>Three-dimensional frequency maps and cell counts in the cochlea, using Imaris.<\/strong><\/p>\n<ul>\n<li>Data acquired on our Lavision UltraMicroscope II light-sheet system.<\/li>\n<li>Collaboration with Ken Hutson, in <a href=\"https:\/\/www.med.unc.edu\/ent\/directory\/douglas-c-fitzpatrick-phd\/\">Doug Fitzpatrick&#8217;s lab<\/a>.<\/li>\n<\/ul>\n<a class=\"btn btn-default btn-lg  oscitas-bootstrap-container\" target=\"_blank\" href=\"https:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC7775904\/\"><i class=\"fa-solid fa-microscope\" ><\/i> Read the paper<\/a>\n<\/div>\n<\/div>\n<\/div>\n<div class = \"alert alert-info  oscitas-bootstrap-container\">\n<div class=\"row  oscitas-bootstrap-container\">\n<div class=\"col-lg-4 col-md-4 col-xs-12 col-sm-12 oscitas-bootstrap-container\">\n<img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-2846 size-full\" src=\"https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2023\/11\/Buglak-et-al-2020-paper-Fig-3D.jpg\" alt=\"\" width=\"429\" height=\"472\" srcset=\"https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2023\/11\/Buglak-et-al-2020-paper-Fig-3D.jpg 429w, https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2023\/11\/Buglak-et-al-2020-paper-Fig-3D-273x300.jpg 273w\" sizes=\"auto, (max-width: 429px) 100vw, 429px\" \/><\/div>\n<div class=\"col-lg-8 col-md-8 col-xs-12 col-sm-12 oscitas-bootstrap-container\">\n<p><strong>Quantification of arterial injury in the rat carotid artery, using Imaris.<\/strong><\/p>\n<ul>\n<li>Data acquired on our Lavision UltraMicroscope II light-sheet system.<\/li>\n<li>Collaboration with Nick Buglak, in <a href=\"https:\/\/bahnsonlab.web.unc.edu\/\">Ed Bahnson&#8217;s lab<\/a>.<\/li>\n<\/ul>\n<a class=\"btn btn-default btn-lg  oscitas-bootstrap-container\" target=\"_blank\" href=\"https:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC7820842\/\"><i class=\"fa-solid fa-microscope\" ><\/i> Read the paper<\/a>\n<\/div>\n<\/div>\n<\/div>\n<div class = \"alert alert-info  oscitas-bootstrap-container\">\n<div class=\"row  oscitas-bootstrap-container\">\n<div class=\"col-lg-4 col-md-4 col-xs-12 col-sm-12 oscitas-bootstrap-container\">\n<img loading=\"lazy\" decoding=\"async\" class=\"alignnone size-medium wp-image-2848\" src=\"https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2023\/11\/Faber-et-al-Figure-3C-300x295.jpg\" alt=\"\" width=\"300\" height=\"295\" srcset=\"https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2023\/11\/Faber-et-al-Figure-3C-300x295.jpg 300w, https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2023\/11\/Faber-et-al-Figure-3C-768x754.jpg 768w, https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2023\/11\/Faber-et-al-Figure-3C-600x589.jpg 600w, https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2023\/11\/Faber-et-al-Figure-3C.jpg 792w\" sizes=\"auto, (max-width: 300px) 100vw, 300px\" \/><\/div>\n<div class=\"col-lg-8 col-md-8 col-xs-12 col-sm-12 oscitas-bootstrap-container\">\n<p><strong>Measurement of hydrogen peroxide and glutathione oxidation in live cells, using a fluorescent reporter, analyzed with FIJI macro.<\/strong><\/p>\n<ul>\n<li>Data acquired on our IX81 microscope.<\/li>\n<li>Collaboration with Sam Faber, in <a href=\"https:\/\/www.med.unc.edu\/epigenetics\/directory\/shaun-mccullough-phd\/\">Shan McCullough&#8217;s lab<\/a>.<\/li>\n<\/ul>\n<a class=\"btn btn-default btn-lg  oscitas-bootstrap-container\" target=\"_blank\" href=\"https:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC8312750\/\"><i class=\"fa-solid fa-microscope\" ><\/i> Read the paper<\/a>\n<\/div>\n<\/div>\n<\/div>\n<div class = \"alert alert-info  oscitas-bootstrap-container\">\n<div class=\"row  oscitas-bootstrap-container\">\n<div class=\"col-lg-4 col-md-4 col-xs-12 col-sm-12 oscitas-bootstrap-container\">\n<img loading=\"lazy\" decoding=\"async\" class=\"alignnone size-full wp-image-2849\" src=\"https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2023\/11\/Schertzer-et-al-Fig-2B.jpg\" alt=\"\" width=\"215\" height=\"221\" \/><\/div>\n<div class=\"col-lg-8 col-md-8 col-xs-12 col-sm-12 oscitas-bootstrap-container\">\n<p><strong>Measurement of precise 3D distances between DNA loci, using Imaris.<\/strong><\/p>\n<ul>\n<li>Data acquired on our BX61 microscope.<\/li>\n<li>Collaboration with Meghan Schertzer, in <a href=\"https:\/\/www.med.unc.edu\/pharm\/calabreselab\/\">Mauro Calabrese&#8217;s lab<\/a>.<\/li>\n<\/ul>\n<a class=\"btn btn-default btn-lg  oscitas-bootstrap-container\" target=\"_blank\" href=\"https:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC6688959\/\"><i class=\"fa-solid fa-microscope\" ><\/i> Read the paper<\/a>\n<\/div>\n<\/div>\n<\/div>\n<div class = \"alert alert-info  oscitas-bootstrap-container\">\n<div class=\"row  oscitas-bootstrap-container\">\n<div class=\"col-lg-4 col-md-4 col-xs-12 col-sm-12 oscitas-bootstrap-container\">\n<img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-2860 size-full\" src=\"https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2023\/11\/Petrucelli-et-al-Fig-4F.jpg\" alt=\"\" width=\"371\" height=\"205\" srcset=\"https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2023\/11\/Petrucelli-et-al-Fig-4F.jpg 371w, https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2023\/11\/Petrucelli-et-al-Fig-4F-300x166.jpg 300w\" sizes=\"auto, (max-width: 371px) 100vw, 371px\" \/><\/div>\n<div class=\"col-lg-8 col-md-8 col-xs-12 col-sm-12 oscitas-bootstrap-container\">\n<p><strong>Quantification of subcellular colocalization in cell culture, using FIJI and Imaris.<\/strong><\/p>\n<ul>\n<li>Data acquired on our Zeiss LSM700<\/li>\n<li>Collaboration with Alex Petrucelli, in <a href=\"https:\/\/unctinglab.wixsite.com\/tinglab\">Jenny Ting&#8217;s lab<\/a>.<\/li>\n<\/ul>\n<a class=\"btn btn-default btn-lg  oscitas-bootstrap-container\" target=\"_blank\" href=\"https:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC6469509\/\"><i class=\"fa-solid fa-microscope\" ><\/i> Read the paper<\/a>\n<\/div>\n<\/div>\n<\/div>\n<p>&nbsp;<\/p>\n","protected":false},"excerpt":{"rendered":"<p>How we will help you At MSL we will maximize your chances of success by: Consulting with you about your image analysis options. Developing optimal image analysis workflows in FIJI, Imaris, SyGlass and Autoquant. This includes writing macros to automate analysis steps. Training you to execute those workflows. We can record training sessions so you &hellip; <a href=\"https:\/\/www.med.unc.edu\/microscopy\/image-analysis\/\" aria-label=\"Read more about Image Analysis\">Read more<\/a><\/p>\n","protected":false},"author":112631,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"layout":"","cellInformation":"","apiCallInformation":"","footnotes":"","_links_to":"","_links_to_target":""},"class_list":["post-2291","page","type-page","status-publish","hentry","odd"],"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v26.8 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>Image Analysis - Microscopy Services Laboratory (MSL)<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.med.unc.edu\/microscopy\/image-analysis\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Image Analysis - Microscopy Services Laboratory (MSL)\" \/>\n<meta property=\"og:description\" content=\"How we will help you At MSL we will maximize your chances of success by: Consulting with you about your image analysis options. Developing optimal image analysis workflows in FIJI, Imaris, SyGlass and Autoquant. This includes writing macros to automate analysis steps. Training you to execute those workflows. We can record training sessions so you &hellip; Read more\" \/>\n<meta property=\"og:url\" content=\"https:\/\/www.med.unc.edu\/microscopy\/image-analysis\/\" \/>\n<meta property=\"og:site_name\" content=\"Microscopy Services Laboratory (MSL)\" \/>\n<meta property=\"article:modified_time\" content=\"2025-09-30T11:32:13+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2023\/11\/Minerva-workstation.jpeg\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:label1\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data1\" content=\"7 minutes\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\/\/www.med.unc.edu\/microscopy\/image-analysis\/\",\"url\":\"https:\/\/www.med.unc.edu\/microscopy\/image-analysis\/\",\"name\":\"Image Analysis - Microscopy Services Laboratory (MSL)\",\"isPartOf\":{\"@id\":\"https:\/\/www.med.unc.edu\/microscopy\/#website\"},\"primaryImageOfPage\":{\"@id\":\"https:\/\/www.med.unc.edu\/microscopy\/image-analysis\/#primaryimage\"},\"image\":{\"@id\":\"https:\/\/www.med.unc.edu\/microscopy\/image-analysis\/#primaryimage\"},\"thumbnailUrl\":\"https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2023\/11\/Minerva-workstation.jpeg\",\"datePublished\":\"2023-11-03T20:54:34+00:00\",\"dateModified\":\"2025-09-30T11:32:13+00:00\",\"breadcrumb\":{\"@id\":\"https:\/\/www.med.unc.edu\/microscopy\/image-analysis\/#breadcrumb\"},\"inLanguage\":\"en-US\",\"potentialAction\":[{\"@type\":\"ReadAction\",\"target\":[\"https:\/\/www.med.unc.edu\/microscopy\/image-analysis\/\"]}]},{\"@type\":\"ImageObject\",\"inLanguage\":\"en-US\",\"@id\":\"https:\/\/www.med.unc.edu\/microscopy\/image-analysis\/#primaryimage\",\"url\":\"https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2023\/11\/Minerva-workstation.jpeg\",\"contentUrl\":\"https:\/\/www.med.unc.edu\/microscopy\/wp-content\/uploads\/sites\/1393\/2023\/11\/Minerva-workstation.jpeg\",\"width\":800,\"height\":358},{\"@type\":\"BreadcrumbList\",\"@id\":\"https:\/\/www.med.unc.edu\/microscopy\/image-analysis\/#breadcrumb\",\"itemListElement\":[{\"@type\":\"ListItem\",\"position\":1,\"name\":\"Home\",\"item\":\"https:\/\/www.med.unc.edu\/microscopy\/\"},{\"@type\":\"ListItem\",\"position\":2,\"name\":\"Image Analysis\"}]},{\"@type\":\"WebSite\",\"@id\":\"https:\/\/www.med.unc.edu\/microscopy\/#website\",\"url\":\"https:\/\/www.med.unc.edu\/microscopy\/\",\"name\":\"Microscopy Services Laboratory (MSL)\",\"description\":\"Department of Pathology and Laboratory Medicine\",\"potentialAction\":[{\"@type\":\"SearchAction\",\"target\":{\"@type\":\"EntryPoint\",\"urlTemplate\":\"https:\/\/www.med.unc.edu\/microscopy\/?s={search_term_string}\"},\"query-input\":{\"@type\":\"PropertyValueSpecification\",\"valueRequired\":true,\"valueName\":\"search_term_string\"}}],\"inLanguage\":\"en-US\"}]}<\/script>\n<!-- \/ Yoast SEO plugin. -->","yoast_head_json":{"title":"Image Analysis - Microscopy Services Laboratory (MSL)","robots":{"index":"index","follow":"follow","max-snippet":"max-snippet:-1","max-image-preview":"max-image-preview:large","max-video-preview":"max-video-preview:-1"},"canonical":"https:\/\/www.med.unc.edu\/microscopy\/image-analysis\/","og_locale":"en_US","og_type":"article","og_title":"Image Analysis - Microscopy Services Laboratory (MSL)","og_description":"How we will help you At MSL we will maximize your chances of success by: Consulting with you about your image analysis options. 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