MiniMUGA Sample Report - Initial Version |
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| Sample ID | MMRRC_UNC_F37772 | ||||||||||||||||||||||||||||||||||
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| Neogen ID | DV3710 | ||||||||||||||||||||||||||||||||||
| MMRRC Strain ID | 43505 | ||||||||||||||||||||||||||||||||||
| MMRRC Strain Name | 129/Sv-Sp4tm3(Sp4)Krc/Mmnc | ||||||||||||||||||||||||||||||||||
| Summary |
The genotype of this sample is of excellent quality.
It is female and inbred.
However, the MiniMUGA report algorithm cannot explain this sample with current parameters.
Either the sample includes a strain that is not present in the current MiniMUGA reference set,
at least three genetic backgrounds are required to explain ≥99.8% of this sample,
or the genotyping quality precludes a correct analysis of the sample background
(particularly in samples from standard commercial inbred strains).
Diagnostic SNPs indicate the presence of the background strain groups 129S. The sample contains the following genetic constructs: Bovine growth hormone poly A signal sequence |
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| Genotyping Quality |
Excellent (4 N calls)
All reported results are dependent on genotyping quality. |
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| Chromosomal Sex | XX | ||||||||||||||||||||||||||||||||||
| Inbreeding Estimate | Inbred (29 H calls at autosomal, X, and PAR chromosome markers) | ||||||||||||||||||||||||||||||||||
| Inbreeding and Genotyping Quality (Plot) |
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| Constructs Detected |
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Primary Background
(Autosomes, X Chromosome) |
Not Applicable (Primary + Secondary Backgrounds <99.8% or genotyping quality precludes correct background analysis) | ||||||||||||||||||||||||||||||||||
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Secondary Background
(Autosomes, X Chromosome) |
Not Applicable (Primary + Secondary Backgrounds <99.8% or genotyping quality precludes correct background analysis) | ||||||||||||||||||||||||||||||||||
| MT Chromosome |
MT Haplogroup 6 - 100.0% Consistent
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| Background Ideogram | Not Applicable | ||||||||||||||||||||||||||||||||||
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Backgrounds Detected
(Diagnostic Alleles) |
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| Notes | The report agrees with the SDS. The sample is inbred with some diagnostics consistent with 129S. No primary or secondary strains are identified due to presence of more than two stains (SDS indicates mixing with Black Swiss). The presence of the BpA construct is detected. | ||||||||||||||||||||||||||||||||||