MiniMUGA Sample Report - Initial Version
Sample ID MMRRC_129S(B6)-Stub1tm1Cpat/Mmnc _M26963
Neogen ID FR4869
MMRRC Strain ID 37469
MMRRC Strain Name 129S.B6-Stub1tm1Cpat/Mmnc
Summary The genotype of this sample is of excellent quality. It is male and inbred, and likely a mix of 129S6/SvEvTac and multiple C57BL/6 substrains.

Diagnostic SNPs indicate the presence of the background strain groups 129S.

The sample contains the following genetic constructs: Bovine growth hormone poly A signal sequence
Genotyping Quality Excellent (7 N calls)
All reported results are dependent on genotyping quality.
Chromosomal Sex XY
Inbreeding Estimate Inbred (6 H calls at autosomal, X, and PAR chromosome markers)
Inbreeding and
Genotyping Quality
(Plot)		 2020-11-11T21:19:31.530570 image/svg+xml Matplotlib v3.3.2, https://matplotlib.org/
Constructs Detected
BlastR
bpA
Cas9
chlor
Cre
DTA
g_FP
hCMV_a
hCMV_b
hTK_pr
iCre
IRES
Luc
r_FP
rtTA
SV40
tTA
- + - - - - - - - - - - - - - - -
Primary Background
(Autosomes,
X Chromosome)
Strain Total Consistent Inconsistent Heterozygous Excluded
129S6/SvEvTac 9719 9578 (99.9%) 1 (0.0%) 5 (0.1%) 135
Secondary Background
(Autosomes,
X Chromosome)
Strain Total Explained Unexplained Excluded
multiple C57BL/6 substrains 6
Clustered 		6 (0.1%)
3 Clustered 		0 (0.0%)
0 Clustered 		0 (0.0%)
Y Chromosome Y Haplogroup 6 - 98.4% Consistent
Includes 129S6/SvEvTac and 11 other strains
MT Chromosome MT Haplogroup 6 - 100.0% Consistent
Includes 129S6/SvEvTac and 12 other strains
Background Ideogram 2020-11-11T21:23:46.480933 image/svg+xml Matplotlib v3.3.2, https://matplotlib.org/
Backgrounds Detected
(Diagnostic Alleles)
Strain Group Homozygous Heterozygous Potential % Observed
129S
(129S1/SvImJ, 129S2/SvHsd, 129S2/SvPasOrlRj, 129S4/SvJaeJ, 129S6/SvEvTac) 		9 1 17 58.8%
Refined Analysis
Background Informative Markers Informative Markers % Genomic Region %
129S6/SvEvTac 2912 99.8% 99.7%
multiple C57BL/6 substrains 1 0.0% 0.0%
Heterozygous 5 0.2% 0.3%
Unexplained Homozygous 0 0.0% 0.0%
Unexplained Heterozygous 0 0.0% 0.0%
Total 2918 100.0% 100.0%
Refined Ideogram 2020-11-11T21:23:47.572544 image/svg+xml Matplotlib v3.3.2, https://matplotlib.org/
Notes The report is consistent with the SDS. The mouse is inbred for 129S6/SvEvTac at MiniMUGA resolution level. A small region of C57BL/6 markers are present at the site of the targeted mutation on C17.
MiniMUGA Sample Report generated on 2020-11-11 21:23