MiniMUGA Sample Report - V2
Sample ID B6.129S2-Rbp1tm1Ipc/Mmucd_M_2L
Neogen ID II2513
MMRRC Strain ID 41471
MMRRC Strain Name B6.129S2-Rbp1tm1Ipc/Mmucd
Summary The genotype of this sample is of excellent quality. It is male and inbred, and likely a mix of multiple C57BL/6 substrains and 129S2/SvHsd.

Diagnostic SNPs indicate the presence of the background strain groups C57BL/6 and the substrains C57BL/6J.

No genetic constructs were detected in this sample.
Genotyping Quality Excellent (7 N calls)
All reported results are dependent on genotyping quality.
Chromosomal Sex XY
Inbreeding Estimate Inbred (23 H calls at autosomal, X, and PAR chromosome markers)
Inbreeding and
Genotyping Quality
(Plot)		 2020-11-17T19:37:30.698049 image/svg+xml Matplotlib v3.3.2, https://matplotlib.org/
Constructs Detected
BlastR
bpA
Cas9
chlor
Cre
DTA
g_FP
hCMV_a
hCMV_b
hTK_pr
iCre
IRES
Luc
r_FP
rtTA
SV40
tTA
- - - - - - - - - - - - - - - - -
Primary Background
(Autosomes,
X Chromosome)
Strain Total Consistent Inconsistent Heterozygous Excluded
multiple C57BL/6 substrains 9719 9170 (99.6%) 26 (0.3%) 10 (0.1%) 513
Secondary Background
(Autosomes,
X Chromosome)
Strain Total Explained Unexplained Excluded
129S2/SvHsd 36
Clustered 		35 (0.4%)
31 Clustered 		1 (0.0%)
0 Clustered 		0 (0.0%)
Y Chromosome Y Haplogroup 14 - 100.0% Consistent
Includes C57BL/6J and 10 other strains
MT Chromosome MT Haplogroup 1 - 100.0% Consistent
Includes 129S2/SvHsd, B6N-Tyr/BrdCrCrl, C57BL/6ByJ, C57BL/6J, C57BL/6JBomTac, C57BL/6JEiJ, C57BL/6JOlaHsd, C57BL/6NCrl, C57BL/6NHsd, C57BL/6NJ, C57BL/6NRj, C57BL/6NTac and 150 other strains
Background Ideogram 2020-11-17T19:46:05.379575 image/svg+xml Matplotlib v3.3.2, https://matplotlib.org/
Backgrounds Detected
(Diagnostic Alleles)
  Diagnostic Alleles Observed
Substrain Homozygous Heterozygous Potential % Observed
C57BL/6J 143 8 156 96.8%
Strain Group Homozygous Heterozygous Potential % Observed
C57BL/6
(B6N-Tyr/BrdCrCrl, C57BL/6J, C57BL/6JBomTac, C57BL/6JEiJ, C57BL/6JOlaHsd, C57BL/6NCrl, C57BL/6NRj) 		6 1 21 33.3%
Refined Analysis
Background Informative Markers Informative Markers % Genomic Region %
multiple C57BL/6 substrains 2813 98.7% 98.6%
129S2/SvHsd 26 0.9% 0.9%
Heterozygous 9 0.3% 0.5%
Unexplained Homozygous 0 0.0% 0.0%
Unexplained Heterozygous 1 0.0% 0.1%
Total 2849 100.0% 100.0%
Refined Ideogram 2020-11-17T19:46:06.318145 image/svg+xml Matplotlib v3.3.2, https://matplotlib.org/
Notes The sample is inbred and the report is consistent with the SDS and strain nomenclature.
MiniMUGA Sample Report generated on 2020-11-17 19:46