MiniMUGA Sample Report - Initial Version
Sample ID MMRRC_UNC_M40220
Neogen ID LT6716
MMRRC Strain ID 43918
MMRRC Strain Name 129S6;129P2-Grin1tm1Bhk/Mmnc
Summary The genotype of this sample is of excellent quality. It is male and inbred, and likely a mix of 129S6/SvEvTac and 129P2/OlaHsd. Clustering of unexplained markers is evidence of an additional background strain.

Diagnostic SNPs indicate the presence of the background strain groups 129S.

No genetic constructs were detected in this sample.
Genotyping Quality Excellent (3 N calls)
All reported results are dependent on genotyping quality.
Chromosomal Sex XY
Inbreeding Estimate Inbred (9 H calls at autosomal, X, and PAR chromosome markers)
Inbreeding and
Genotyping Quality
(Plot)
Constructs Detected
BlastR
bpA
Cas9
chlor
Cre
DTA
g_FP
hCMV_a
hCMV_b
hTK_pr
iCre
IRES
Luc
r_FP
rtTA
SV40
tTA
- - - - - - - - - - - - - - - - -
Primary Background
(Autosomes,
X Chromosome)
Strain Total Consistent Inconsistent Heterozygous Excluded
129S6/SvEvTac 9719 9579 (99.9%) 1 (0.0%) 9 (0.1%) 130
Secondary Background
(Autosomes,
X Chromosome)
Strain Total Explained Unexplained Excluded
129P2/OlaHsd 10
Clustered 		2 (0.0%)
0 Clustered 		8 (0.1%)
8 Clustered 		0 (0.0%)
Y Chromosome Y Haplogroup 6 - 100.0% Consistent
Includes 129P2/OlaHsd, 129S6/SvEvTac and 10 other strains
MT Chromosome MT Haplogroup 6 - 100.0% Consistent
Includes 129S6/SvEvTac and 12 other strains
Background Ideogram
Backgrounds Detected
(Diagnostic Alleles)
Strain Group Homozygous Heterozygous Potential % Observed
129S
(129S1/SvImJ, 129S2/SvHsd, 129S2/SvPasOrlRj, 129S4/SvJaeJ, 129S6/SvEvTac) 		10 0 17 58.8%
Refined Analysis
Background Informative Markers Informative Markers % Genomic Region %
129S6/SvEvTac 694 98.6% 99.4%
129P2/OlaHsd 1 0.1% 0.6%
Heterozygous 1 0.1% 0.0%
Unexplained Homozygous 0 0.0% 0.0%
Unexplained Heterozygous 8 1.1% 0.0%
Total 704 100.0% 100.0%
Refined Ideogram
Notes The report agrees with strain nomenclature and the SDS.
MiniMUGA Sample Report generated on 2020-11-02 15:17