{"id":3779,"date":"2018-12-17T13:01:57","date_gmt":"2018-12-17T18:01:57","guid":{"rendered":"https:\/\/www.med.unc.edu\/mmrrc\/?page_id=3779"},"modified":"2018-12-17T13:06:40","modified_gmt":"2018-12-17T18:06:40","slug":"resources","status":"publish","type":"page","link":"https:\/\/www.med.unc.edu\/mmrrc\/genotypes\/resources\/","title":{"rendered":"Annotations and Resources"},"content":{"rendered":"

10Annotations and Resources<\/h2>\n\n\n\n\n\n\n\n\n\n\n
Array<\/th>\nFiles<\/th>\nNotes<\/th>\n<\/tr>\n<\/thead>\n
MiniMUGA<\/td>\nMarker Annotations<\/a><\/td>\nA list of all valid markers in the MiniMUGA array, including extra information designed to facilitate\u00a0custom analyses by individual researchers.<\/td>\n<\/tr>\n
MiniMUGA<\/td>\nInbred Consensus Genotypes<\/a>\u00a0(all)<\/p>\n

Inbred Consensus Genotypes<\/a>\u00a0(interactive)<\/td>\n

Consensus genotypes for 116 standard inbred lab strains, 72 CC strains, and 41 BXD strains. Marker annotations can also be included with these downloads.<\/td>\n<\/tr>\n
MUGA<\/td>\nprobes (mm9)<\/a><\/p>\n

clusters<\/a><\/td>\n

Reference clusters derived from a set of 2,425 Diversity Outbred mice (1309 male, 1116 female) genotyped across multiple batches.<\/td>\n<\/tr>\n
MUGA2<\/td>\nmarkers<\/a><\/td>\nA list of all valid markers in the MUGA2 array<\/td>\n<\/tr>\n
MegaMUGA<\/td>\nprobes (mm9)<\/a><\/p>\n

clusters<\/a><\/td>\n

Reference clusters derived from a set of 500 Diversity Outbred mice (250 male, 250 female) genotyped across multiple batches.<\/td>\n<\/tr>\n
GigaMUGA<\/td>\nprobes (mm10)<\/a><\/p>\n

clusters<\/a><\/td>\n

Reference clusters derived from a set of 500 mice spanning classical inbred strains; wild-derived strains; the Collaborative Cross and Diversity Outbred populations; and common laboratory stocks. These samples were processed in 7 batches but genotype-calling was performed on all batches jointly.<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n","protected":false},"excerpt":{"rendered":"

10Annotations and Resources Array Files Notes MiniMUGA Marker Annotations A list of all valid markers in the MiniMUGA array, including extra information designed to facilitate\u00a0custom analyses by individual researchers. MiniMUGA Inbred Consensus Genotypes\u00a0(all) Inbred Consensus Genotypes\u00a0(interactive) Consensus genotypes for 116 standard inbred lab strains, 72 CC strains, and 41 BXD strains. Marker annotations can also … Read more<\/a><\/p>\n","protected":false},"author":4349,"featured_media":0,"parent":10,"menu_order":3,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"footnotes":"","_links_to":"","_links_to_target":""},"class_list":["post-3779","page","type-page","status-publish","hentry","odd"],"acf":[],"_links_to":[],"_links_to_target":[],"_links":{"self":[{"href":"https:\/\/www.med.unc.edu\/mmrrc\/wp-json\/wp\/v2\/pages\/3779","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.med.unc.edu\/mmrrc\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.med.unc.edu\/mmrrc\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.med.unc.edu\/mmrrc\/wp-json\/wp\/v2\/users\/4349"}],"replies":[{"embeddable":true,"href":"https:\/\/www.med.unc.edu\/mmrrc\/wp-json\/wp\/v2\/comments?post=3779"}],"version-history":[{"count":0,"href":"https:\/\/www.med.unc.edu\/mmrrc\/wp-json\/wp\/v2\/pages\/3779\/revisions"}],"up":[{"embeddable":true,"href":"https:\/\/www.med.unc.edu\/mmrrc\/wp-json\/wp\/v2\/pages\/10"}],"wp:attachment":[{"href":"https:\/\/www.med.unc.edu\/mmrrc\/wp-json\/wp\/v2\/media?parent=3779"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}