{"id":2381,"date":"2013-07-26T17:40:12","date_gmt":"2013-07-26T21:40:12","guid":{"rendered":"https:\/\/www.med.unc.edu\/neuroscience\/core-facilities\/bioinformatics\/"},"modified":"2024-12-02T09:18:37","modified_gmt":"2024-12-02T14:18:37","slug":"bioinformatics","status":"publish","type":"page","link":"https:\/\/www.med.unc.edu\/neuroscience\/core-facilities\/bioinformatics\/","title":{"rendered":"Bioinformatics"},"content":{"rendered":"<div id=\"parent-fieldname-text-aacb4738261c49d3b856affc87e8daac\" class=\"\">\n<p class=\"lead\">Dedicated research scientists implementing advanced bioinformatics pipelines and providing bioinformatics support for specific projects. This core is jointly funded by the UNC Neuroscience Center core grant and the UNC Clinical Translational Research Center for Neurodevelopmental Disorders grant.<\/p>\n<p><b>Faculty Director:<br \/>\n<\/b>Mark J. Zylka, Ph.D.<br \/>\n<a href=\"mailto:mark_zylka@med.unc.edu\">mark_zylka@med.unc.edu<\/a><br \/>\nPhone: 919-966-2540<\/p>\n<p><b>Bioinformatics Scientists:<br \/>\n<\/b>Austin J. Hepperla, Ph.D.<br \/>\n<a href=\"mailto:hepperla@unc.edu\">hepperla@unc.edu<\/a><br \/>\nPhone: 919-966-4068<\/p>\n<\/div>\n<div id=\"parent-fieldname-text-aacb4738261c49d3b856affc87e8daac\" class=\"\">\n<div class=\"mceContentBody documentContent template-document_view portaltype-document site-neuroscience section-core-facilities subsection-bioinformatics subsection-bioinformatics-bioinformatics icons-on userrole-authenticated userrole-site administrator userrole-editor userrole-reader userrole-contributor userrole-reviewer\"><b>Services<\/b><\/div>\n<p>Data analysis and biological interpretation are increasingly frequent barriers preventing investigators and trainees from utilizing the numerous multifaceted high-throughput sequencing-based approaches supported by UNC\u2019s High-Throughput Sequencing Facility (HTSF; <a href=\"http:\/\/www.med.unc.edu\/genomics\">http:\/\/www.med.unc.edu\/genomics<\/a>) in their research. The Bioinformatics Core aims to bridge this gap by providing support for NINDS-funded investigators ranging from experimental design to biological interpretation of their results, as well as helping act as liaison between the lab and the HTSF.<br \/>\nWe build custom software analysis pipelines and bioinformatics tools, as well as design thenovel analytical and data integration approaches necessary to facilitate answering the cutting-edge questions in neuroscience.<br \/>\nWe specialize in large-scale studies utilizing one or more of the following assays, either in isolation or with high-level integration:<\/p>\n<ul>\n<li>Gene expression and alternative splicing<\/li>\n<li>mRNA-seq (polyA<sup>+<\/sup>)<\/li>\n<li>Total RNA-seq (riboMinus, riboZero)<\/li>\n<li>Chromatin-based assays<\/li>\n<li>ChIP-seq (transcription factor or histone occupancy)<\/li>\n<li>FAIRE-seq (open chromatin\/regulatory elements)<\/li>\n<li>DNase-seq (open chromatin\/regulatory elements)<\/li>\n<li>ATAC-seq (open chromatin\/regulatory elements)<\/li>\n<li>MNase-seq (nucleosome positioning)<\/li>\n<li>Genotyping<\/li>\n<li>Whole genome sequencing<\/li>\n<li>Exome or targeted sequencing<\/li>\n<li>Microbiomics\/metagenomics<\/li>\n<li>16S rRNA<\/li>\n<\/ul>\n<p>Investigators are encouraged to contact bioinformatics scientist or core director to discuss their specific needs.<\/p>\n<p><b>Fees<\/b><\/p>\n<p>Determined in consultation with the core director.<\/p>\n<\/div>\n","protected":false},"excerpt":{"rendered":"<p>Dedicated research scientists implementing advanced bioinformatics pipelines and providing bioinformatics support for specific projects. This core is jointly funded by the UNC Neuroscience Center core grant and the UNC Clinical Translational Research Center for Neurodevelopmental Disorders grant. Faculty Director: Mark J. Zylka, Ph.D. mark_zylka@med.unc.edu Phone: 919-966-2540 Bioinformatics Scientists: Austin J. Hepperla, Ph.D. hepperla@unc.edu Phone: 919-966-4068 &hellip; <a href=\"https:\/\/www.med.unc.edu\/neuroscience\/core-facilities\/bioinformatics\/\" aria-label=\"Read more about Bioinformatics\">Read more<\/a><\/p>\n","protected":false},"author":80868,"featured_media":0,"parent":2375,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"footnotes":"","_links_to":"","_links_to_target":""},"class_list":["post-2381","page","type-page","status-publish","hentry","odd"],"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v26.8 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>Bioinformatics | UNC Neuroscience Center<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.med.unc.edu\/neuroscience\/core-facilities\/bioinformatics\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Bioinformatics | UNC Neuroscience Center\" \/>\n<meta property=\"og:description\" content=\"Dedicated research scientists implementing advanced bioinformatics pipelines and providing bioinformatics support for specific projects. This core is jointly funded by the UNC Neuroscience Center core grant and the UNC Clinical Translational Research Center for Neurodevelopmental Disorders grant. Faculty Director: Mark J. Zylka, Ph.D. mark_zylka@med.unc.edu Phone: 919-966-2540 Bioinformatics Scientists: Austin J. Hepperla, Ph.D. hepperla@unc.edu Phone: 919-966-4068 &hellip; Read more\" \/>\n<meta property=\"og:url\" content=\"https:\/\/www.med.unc.edu\/neuroscience\/core-facilities\/bioinformatics\/\" \/>\n<meta property=\"og:site_name\" content=\"UNC Neuroscience Center\" \/>\n<meta property=\"article:modified_time\" content=\"2024-12-02T14:18:37+00:00\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:site\" content=\"@uncneuro\" \/>\n<meta name=\"twitter:label1\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data1\" content=\"2 minutes\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\/\/www.med.unc.edu\/neuroscience\/core-facilities\/bioinformatics\/\",\"url\":\"https:\/\/www.med.unc.edu\/neuroscience\/core-facilities\/bioinformatics\/\",\"name\":\"Bioinformatics | UNC Neuroscience Center\",\"isPartOf\":{\"@id\":\"https:\/\/www.med.unc.edu\/neuroscience\/#website\"},\"datePublished\":\"2013-07-26T21:40:12+00:00\",\"dateModified\":\"2024-12-02T14:18:37+00:00\",\"breadcrumb\":{\"@id\":\"https:\/\/www.med.unc.edu\/neuroscience\/core-facilities\/bioinformatics\/#breadcrumb\"},\"inLanguage\":\"en-US\",\"potentialAction\":[{\"@type\":\"ReadAction\",\"target\":[\"https:\/\/www.med.unc.edu\/neuroscience\/core-facilities\/bioinformatics\/\"]}]},{\"@type\":\"BreadcrumbList\",\"@id\":\"https:\/\/www.med.unc.edu\/neuroscience\/core-facilities\/bioinformatics\/#breadcrumb\",\"itemListElement\":[{\"@type\":\"ListItem\",\"position\":1,\"name\":\"Home\",\"item\":\"https:\/\/www.med.unc.edu\/neuroscience\/\"},{\"@type\":\"ListItem\",\"position\":2,\"name\":\"Core Facilites\",\"item\":\"https:\/\/www.med.unc.edu\/neuroscience\/core-facilities\/\"},{\"@type\":\"ListItem\",\"position\":3,\"name\":\"Bioinformatics\"}]},{\"@type\":\"WebSite\",\"@id\":\"https:\/\/www.med.unc.edu\/neuroscience\/#website\",\"url\":\"https:\/\/www.med.unc.edu\/neuroscience\/\",\"name\":\"UNC Neuroscience Center\",\"description\":\"\",\"potentialAction\":[{\"@type\":\"SearchAction\",\"target\":{\"@type\":\"EntryPoint\",\"urlTemplate\":\"https:\/\/www.med.unc.edu\/neuroscience\/?s={search_term_string}\"},\"query-input\":{\"@type\":\"PropertyValueSpecification\",\"valueRequired\":true,\"valueName\":\"search_term_string\"}}],\"inLanguage\":\"en-US\"}]}<\/script>\n<!-- \/ Yoast SEO plugin. -->","yoast_head_json":{"title":"Bioinformatics | UNC Neuroscience Center","robots":{"index":"index","follow":"follow","max-snippet":"max-snippet:-1","max-image-preview":"max-image-preview:large","max-video-preview":"max-video-preview:-1"},"canonical":"https:\/\/www.med.unc.edu\/neuroscience\/core-facilities\/bioinformatics\/","og_locale":"en_US","og_type":"article","og_title":"Bioinformatics | UNC Neuroscience Center","og_description":"Dedicated research scientists implementing advanced bioinformatics pipelines and providing bioinformatics support for specific projects. This core is jointly funded by the UNC Neuroscience Center core grant and the UNC Clinical Translational Research Center for Neurodevelopmental Disorders grant. Faculty Director: Mark J. Zylka, Ph.D. mark_zylka@med.unc.edu Phone: 919-966-2540 Bioinformatics Scientists: Austin J. 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