LOCUS       pOME0237M      1273 bp    DNA     linear   VRL 27-AUG-2012
DEFINITION  Reverse compl sequence of anti-PAN pOME0236 Human herpesvirus 8 strain JSC-1 clone BAC16, complete genome.
ACCESSION   GQ994935
VERSION     GQ994935.1  GI:261853473
KEYWORDS    .
SOURCE      Human herpesvirus 8 (Kaposi's sarcoma-associated herpesvirus)
  ORGANISM  Human herpesvirus 8
            Viruses; dsDNA viruses, no RNA stage; Herpesvirales; Herpesviridae;
            Gammaherpesvirinae; Rhadinovirus.
REFERENCE   1  (bases 1 to 138146)
  AUTHORS   Brulois,K.F., Chang,H., Lee,A.S., Ensser,A., Wong,L.Y., Toth,Z.,
            Lee,S.H., Lee,H.R., Myoung,J., Ganem,D., Oh,T.K., Kim,J.F.,
            Gao,S.J. and Jung,J.U.
  TITLE     Construction and manipulation of a new Kaposi's sarcoma-associated
            herpesvirus Bacterial artificial chromosome clone
  JOURNAL   J. Virol. 86 (18), 9708-9720 (2012)
   PUBMED   22740391
REFERENCE   2  (bases 1 to 138146)
  AUTHORS   Brulois,K., Lee,A. and Chang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-SEP-2009) Molecular Microbiology and Immunology,
            University of Southern California, 1450 Biggy Street, Los Angeles,
            CA 90033, USA
FEATURES             Location/Qualifiers
     source          complement(<1..>1273)
                     /organism="Human herpesvirus 8"
                     /mol_type="genomic DNA"
                     /strain="JSC-1"
                     /db_xref="taxon:37296"
                     /clone="BAC16"
                     /note="infectious BAC clone harboring full-length KSHV
                     genome; derived from rKSHV.219, KSHV-infected JSC1
                     primary effusion lymphoma cell line"
     Site            1..6
                     /site_type="mutagenized site"
                     /label="5'RE site"
     misc_RNA        complement(<7..>1267)
                     /note="5' end not determine, est. based on Fig. 2"
                     /label="K4.5 (T6.1, as-K5-K6) - Ganem lab 2014"
     misc_RNA        complement(<7..>1267)
                     /note="corresp. to 5' end ID'd by 2005 Taylor et al.
                     (Chang/Moore lab)"
                     /note="corresp. to PAN RNA 3' end ID'd by KSHV 2.0"
                     /note="corresp. pos."
                     /label="K4.5 (T6.1) - Chang/Moore lab 2005/2011, Ganem
                     lab 2014"
     misc_RNA        7..1267
                     /note="5' end approx."
                     /note="corresp. pos."
                     /label="K7.3 (anti-PAN lncRNA) - Chang/Moore lab 2011"
     CDS             166..546
                     /label=K7
     polyA_signal    1262..1267
                     /label="PAS K7.3(anti-PAN lncRNA) - Schifano guess"
     Site            1268..1273
                     /site_type="mutagenized site"
                     /label="3' RE site"
ORIGIN
        1 gaattcTTAT TAATGTTCAT CCGTATTGTG TATATGTAAT TTGGTTTCCA TATTTGGTAG
       61 GAGTATGGAG TTTTCTTATG GATTATTAAG GGTCAGCTTG AAGGATGATG TTAATGACAT
      121 AAAGGGGCGT GGCTTCCAAA AATGGGTGGC TAACCTGTCC AAAATATGGG AACACTGGAG
      181 ATAAAAGGGG CCAGCTTGAG TCAGTTTAGC ACTGGGACTG CCCAGTCACC TTGGCTGCCG
      241 CTTCACCTAT GGATTTTGTG CTCGCTGCTT GCCTTCTTGC CGCTTCTGGT TTTCATTGGT
      301 GCCGCCGATT GTGGGTTGAT TGCGTCGCTT TTGGCAATAT ACCCATCCTG GCTTTCGGCT
      361 AGGTTTTCCG TCCTACTTTT CCCACATTGG CCTGAGAGCT GTAGTACAAA AAACACCGCG
      421 CGGTCTGGAG CTCTCCATAA GCCCGCAGAA CAAAAGCTGC GATTTGCCCA AAAACCTTGC
      481 CATGGCAACT ATACAGTCAC CCCTTGCGGG TTATTGCATT GGATTCAATC TCCAGGCCAG
      541 TTGTAGCCCC CTTTTATGAT ATGCGAGGAT ACTTAACGTG TCTGAATGTG GAATATAATG
      601 TGAAAGGAAA GCAGCGCCCA CTGGTGTATC AGAACAGTGG TGCACTACCT ATCTGCTCAT
      661 TCGTTGTTTC GGTTCTGTGT TTGTCTGATT CTTAGATAGT GTTGAGGTAA TTCTAGAAAG
      721 CGGATTGAGT GTAAATCGGG CCACTTTGCC CTAAATGTGA CAATCTGGAT GTGTATCTTA
      781 TTGGTGCGTT GTGAAGCATT TTAAAATGCG TTTTAGATTG TATCAGGCTA GTGCTGTAAT
      841 GGTGTGTTTA TTTTTCCAGT GTAAGCAAGT CGATTTGAAT GACATAGGCG ACAAAGTGAG
      901 GTGGCATTTG TCAGAAGTTT CAAAGTCGTG TAAGAACATT GGACTAAAGT GGTGTGCGGC
      961 AGCTGGGAGC GCTCTTTCAA TGTTAATGTT TTAATGTGTA TGTTGTGTTG GAAGTTCCAG
     1021 GCTAATATTT GATGTTTTGC TAGGTTGACT AACGATGTTT TCTTGTAGGT GAAAGCGTTG
     1081 TGTAACAATG ATAACGGTGT TTTGGCTGGG TTTTTCCTTG TTCGCACCGG ACACCTCCAG
     1141 TGACCAGACG GCAAGGTTTT TATCCCAGTG TATATTGGAA AAACATGTTA TACTTTTGAC
     1201 AATTTAACGT GCCTAGAGCT CAAATTAAAC TAATACCATA ACGTAATGCA ACTTACAACA
     1261 TAAATAAgga tcc
//