LOCUS pOME0239M 2925 bp DNA linear VRL 27-AUG-2012 DEFINITION Reverse compl antiRTA3kb pOME0238 Human herpesvirus 8 strain JSC-1 clone BAC16, complete genome. ACCESSION GQ994935 VERSION GQ994935.1 GI:261853473 KEYWORDS . REFERENCE 1 (bases 1 to 138146) AUTHORS Brulois,K.F., Chang,H., Lee,A.S., Ensser,A., Wong,L.Y., Toth,Z., Lee,S.H., Lee,H.R., Myoung,J., Ganem,D., Oh,T.K., Kim,J.F., Gao,S.J. and Jung,J.U. TITLE Construction and manipulation of a new Kaposi's sarcoma-associated herpesvirus Bacterial artificial chromosome clone JOURNAL J. Virol. 86 (18), 9708-9720 (2012) PUBMED 22740391 REFERENCE 2 (bases 1 to 138146) AUTHORS Brulois,K., Lee,A. and Chang,H. TITLE Direct Submission JOURNAL Submitted (21-SEP-2009) Molecular Microbiology and Immunology, University of Southern California, 1450 Biggy Street, Los Angeles, CA 90033, USA COMMENT Negative control reverse sequence of antiRTA3kb FEATURES Location/Qualifiers misc_RNA <1..>2925 /note="corresp. pos." /label="K7.7 (T3.0 lncRNA) - Ganem lab 2010 (Xu et al.)" misc_RNA 1..2925 /note="corresp. pos." /label="K7.7 (T3.0 lncRNA) - Yuan lab 2002" source complement(<1..>2925) /organism="Human herpesvirus 8" /mol_type="genomic DNA" /strain="JSC-1" /db_xref="taxon:37296" /clone="BAC16" /note="infectious BAC clone harboring full-length KSHV genome; derived from rKSHV.219, KSHV-infected JSC1 primary effusion lymphoma cell line" Site 1..8 /site_type="mutagenized site" /label="5' RE" CDS complement(9..2919) /codon_start=1 /product="ORF50" /protein_id="ACY00448.1" /db_xref="GI:261853526" /translation="MAQDDKGKKLRRSCVESFVGLSDELKAQLYQCVLLINDAYETIY DPSDLNRVVEDVCIRIMKECSKLGALCGLFTDINMFNLFCFFRASRMRTKGAAGYNVP CAEASQGIIRILTERILFCTEKAFLTAACSGVSLPPAICKLLHEIYTEMKAKCLGAWR RLVCNRRPIMILTSSLLKLYNTYDTAGLLSEQSRALCLLVFQPVYLPRIMAPLEIMTK GQLAPENFYSITGSAEKRRPITTGKVTGLSYPGSGLMPESLILPILEPGLLPASMVDL SDVLAKPAVILSAPALSQFVISKPHPNMPHTVSIIPFNPSGTDPAFISTWQAASQNMV YNTSTAPLKPATGSSQTVSVKAVAQGAVITATTVPQAMPARGTGGELPVMSASTPARD QVAACFVAENTGDSPDNPSSFLTSCHPCDPNTVIVAQQFQPPQCVTLLQVTCAPSSTP PPDSTVRAPVVQLPTVVPLPASAFLPALAQPEASGEELPGGHDGDQGVPCRDSTAAAT AAEATTPKRKQRSKERSSKKRKALTVPEADTTPSTTTPGTSLGSITTPQDVHATDVAT SEGPSEAQPPLLSLPPPLDVDQSLFALLDEAGPETWDVGSPLSPTDDALLSSILQGLY QLDTPPPLRSPSPASFGPESPADIPSPSGGEYTQLQPVRATSATPANEVQESGTLYQL HQWRNYFRD" /label="ORF50 (RTA)" /label="Reverse compliment of ORF50 (RTA)" Site 2920..2925 /site_type="mutagenized site" /label="3' RE" ORIGIN 1 gcggccgcTG ACAAGGTAAA GATCGACCTT TTTATTGTAT ACTGAACAAT GCGTGTTTAC 61 AATGGTGTAG GTGGGAGCAG AGTTCGCCAA GCTCTACGTC CGAACAGTCG GGTGTCAGGG 121 CTCTTATTAA GTGTTCGGTG TACTTGACCA AAGCCGCGGA ACCTAGGTTG GGTCTGTACA 181 GGTCGTACCA GGCAAAAAAG GATCGGGCGG TGCTTTTCAG GAGAGTTAGG GACGTGCTGA 241 TTATGTGGAC AAGCTTCTGC TCGTAAATGC ACCGCTGGTA CATCTGAACG ACAGCTGTCC 301 AAAAAAAACA AAGGTTCAGC TGCACGTTAA AATCTGTATC CTGAAAGTCC TCGTAAATGA 361 CAGTTTCTAC CAAGAAAAAC TTTTTTACCA CGCTGGCCAT CCACTGAAAG GAGGGAGCAC 421 ACGTCCCGTT GTGCGTTGTT AGGATATCCC TAACTTCGGA GCGGAGACGG CCGGACGCTC 481 CCACAAAATG GGAGAGGCAC CACTCTGTGC AGTCCGCGGT CGGGGGTTCT GATTCCAGGG 541 GCGCCGTGTG GGGGTATTGG AGAGTCAAAA CTCTGGGCAG TCCCTTAATG AGCTCTCTCT 601 CAAAACCTAT GCAGCCAGCG TCCACTAGTG GCAGCATGCC GTTAATAACA CCCCTTATCT 661 TGTCGTTGCC AAGTTTGTAC AACTGCTGCA GGGAATAAGC CAAATTCGCC CTAGCCGCGG 721 GAACCAGGTA CGGCTCGCTT TGTCGGTGCT GGACCAATAT CTGAATGGTC TTTGCAAGGT 781 ATAGGGTCTT CTCAACGTTT AGAGCGGGTA CGTGGCAGTC TGGATTGAGG GTGGCGACGG 841 ACAGGGTATC TAACTCCTGA AGTATCTGAT CCCAGGACGG GTAATGATAC CTAAACAGAT 901 GGTTGAACAG GTGATCTTTA AGGGGCCTTC TCGATGTCAT TGTAAAAACT ATGACACGCC 961 ACTCTCTCCT TAGGGTAAGA AGCTTCGGCG GTCCTGTGTG GAAAGCTTCG TCGGCCTCTC 1021 GGACGAACTG AAGGCCCAAC TCTACCAGTG TGTGCTCCTT ATAAATGACG CATACGAAAC 1081 AATCTACGAT CCCAGTGACC TAAATAGAGT GGTGGAAGAT GTGTGCATTC GGATTATGAA 1141 AGAATGTTCC AAGCTTGGTG CGCTATGTGG TCTGTTTACA GACATTAACA TGTTTAACCT 1201 TTTCTGCTTT TTTCGTGCCT CTCGAATGAG GACCAAAGGC GCGGCCGGGT ACAACGTGCC 1261 ATGCGCAGAG GCATCCCAAG GCATTATTCG GATCCTCACG GAGAGGATCT TATTCTGCAC 1321 AGAAAAGGCA TTTCTGACAG CCGCATGCAG CGGGGTGAGC CTGCCTCCAG CCATATGTAA 1381 GCTACTACAC GAAATATACA CTGAAATGAA GGCCAAATGC CTGGGGGCCT GGAGGCGACT 1441 CGTCTGCAAT CGGAGGCCCA TTATGATATT AACCTCTTCC CTACTGAAGC TCTACAACAC 1501 GTACGATACC GCCGGGCTGC TCTCTGAGCA GTCCAGGGCC CTCTGCCTTT TGGTTTTCCA 1561 ACCGGTCTAC CTTCCGAGGA TTATGGCGCC GCTGGAGATC ATGACCAAGG GTCAGCTCGC 1621 CCCTGAAAAC TTTTACAGCA TCACCGGTTC TGCTGAGAAA CGCCGGCCAA TTACCACCGG 1681 CAAGGTCACT GGACTGTCCT ATCCAGGAAG CGGTCTCATG CCAGAATCTT TAATTTTGCC 1741 AATCCTGGAG CCAGGACTGT TGCCGGCTTC CATGGTAGAC CTCAGCGATG TGCTGGCAAA 1801 ACCCGCCGTT ATTCTGAGCG CCCCTGCCCT GAGCCAGTTT GTCATTAGCA AACCCCATCC 1861 CAACATGCCG CACACCGTCA GCATCATCCC CTTTAACCCA TCGGGTACAG ACCCGGCGTT 1921 TATTAGTACG TGGCAGGCCG CGTCACAGAA TATGGTGTAC AACACATCCA CCGCGCCCTT 1981 AAAACCGGCC ACCGGTAGTT CACAGACGGT GTCAGTCAAG GCGGTTGCTC AAGGGGCCGT 2041 GATTACTGCG ACAACGGTGC CGCAGGCAAT GCCAGCGCGG GGTACCGGAG GGGAGTTGCC 2101 TGTAATGTCA GCGTCCACTC CTGCAAGAGA TCAGGTCGCT GCATGTTTTG TCGCAGAGAA 2161 CACCGGAGAT TCTCCCGACA ACCCGAGCTC TTTCCTGACG TCATGTCACC CTTGCGATCC 2221 GAACACGGTT ATAGTGGCCC AGCAATTTCA ACCACCGCAA TGCGTTACGT TGTTGCAGGT 2281 TACCTGTGCC CCCTCTTCGA CACCACCCCC CGATTCAACA GTCCGGGCCC CGGTGGTGCA 2341 GTTGCCAACA GTAGTCCCTC TGCCGGCCAG CGCGTTCCTC CCGGCGCTCG CCCAACCAGA 2401 AGCCTCGGGC GAAGAGCTTC CGGGCGGTCA TGACGGAGAC CAAGGTGTGC CGTGTAGAGA 2461 TTCAACGGCG GCGGCTACGG CGGCAGAGGC GACAACACCC AAACGAAAGC AGAGAAGCAA 2521 AGAGAGGAGC TCAAAGAAGC GTAAGGCTTT GACCGTGCCA GAAGCCGACA CCACGCCATC 2581 GACCACGACA CCTGGTACCT CTTTGGGATC AATTACCACC CCCCAGGATG TGCACGCCAC 2641 GGATGTCGCC ACGTCTGAGG GACCATCGGA GGCACAACCC CCGCTACTGT CGTTACCCCC 2701 GCCACTGGAC GTAGATCAGA GTCTATTCGC CCTGTTAGAC GAAGCGGGCC CTGAAACATG 2761 GGATGTCGGG TCGCCTCTCT CCCCCACTGA CGACGCGCTG TTGTCCAGTA TTCTGCAAGG 2821 ACTGTACCAG CTGGACACGC CACCGCCTCT GCGGTCACCC TCCCCCGCTT CCTTCGGCCC 2881 GGAGTCTCCG GCGGATATAC CGTCACCTTC TGGTGGAGAg aattc //