LOCUS pOME0240P 1217 bp DNA linear VRL 27-AUG-2012 DEFINITION T15 Human herpesvirus 8 strain JSC-1 clone BAC16, complete genome. ACCESSION GQ994935 VERSION GQ994935.1 GI:261853473 KEYWORDS . SOURCE Human herpesvirus 8 (Kaposi's sarcoma-associated herpesvirus) ORGANISM Human herpesvirus 8 Viruses; dsDNA viruses, no RNA stage; Herpesvirales; Herpesviridae; Gammaherpesvirinae; Rhadinovirus. REFERENCE 1 (bases 1 to 138146) AUTHORS Brulois,K.F., Chang,H., Lee,A.S., Ensser,A., Wong,L.Y., Toth,Z., Lee,S.H., Lee,H.R., Myoung,J., Ganem,D., Oh,T.K., Kim,J.F., Gao,S.J. and Jung,J.U. TITLE Construction and manipulation of a new Kaposi's sarcoma-associated herpesvirus Bacterial artificial chromosome clone JOURNAL J. Virol. 86 (18), 9708-9720 (2012) PUBMED 22740391 REFERENCE 2 (bases 1 to 138146) AUTHORS Brulois,K., Lee,A. and Chang,H. TITLE Direct Submission JOURNAL Submitted (21-SEP-2009) Molecular Microbiology and Immunology, University of Southern California, 1450 Biggy Street, Los Angeles, CA 90033, USA FEATURES Location/Qualifiers repeat_region <1..56 /rpt_family="LIR1" /rpt_type=inverted source <1..>1217 /organism="Human herpesvirus 8" /mol_type="genomic DNA" /strain="JSC-1" /db_xref="taxon:37296" /clone="BAC16" /note="infectious BAC clone harboring full-length KSHV genome; derived from rKSHV.219, KSHV-infected JSC1 primary effusion lymphoma cell line" Site 1..7 /site_type="mutagenized site" /label="5' RE site" misc_RNA 7..1211 /label="K4.7 (T1.5) - Ganem lab 2014" misc_RNA 7..1211 /note="corresp. pos." /label="K4.7 (T1.5) - Yuan lab 2004" misc_RNA 7..1211 /note="5' end approx." /note="corresp. pos." /label="K4.7 (T1.5) - Chang/Moore lab 2011" misc_RNA 7..1211 /note="corresp. to 5' end ID'd by 2005 Taylor et al. (Chang/Moore lab)" /note="corresp. to PAN RNA 3' end ID'd by KSHV 2.0" /note="corresp. pos." /label="K4.5 (T6.1) - Chang/Moore lab 2005/2011, Ganem lab 2014" repeat_region 58..497 /note="22 copies" /rpt_family="DR1" /rpt_type=direct repeat_region 511..665 /note="5 copies" /rpt_family="DR2" /rpt_type=direct polyA_signal 870..875 /label="PAS K4.7(T1.5) - Schifano guess" polyA_site 885 /note="corresp. pos." /label="TTS K4.7(T1.5) - Zheng lab 2013" polyA_site 961 /note="not confirmed by 3' RACE, corresp. pos." /label="TTS K4.7(T1.5) - Zheng lab 2013" misc_RNA 1131..1211 /note="5' end not determine, est. based on Fig. 2" /label="K4.5 (T6.1, as-K5-K6) - Ganem lab 2014" polyA_signal 1190..1195 /label="PAS K4.7(T1.5) - Schifano guess" polyA_site 1210 /note="corresp. pos." /label="TTS K4.7(T1.5) - Zheng lab 2013" Site 1212..1217 /site_type="mutagenized site" /label="3' RE site" ORIGIN 1 ggtaccGCGG CGGCACGTGG GACGGATCTC TTGGATTTAC CCGTAACGAG GAGCGGCGCA 61 CCCCAGGAGC CCCGGCAGCA CCCCAGGAGC CCCGGCAGCA CCCCAGGAGC CCCGGCAGCA 121 CCCCAGGAGC CCCGGCAGCA CCCCAGGAGC CCCGGCAGCA CCCCAGGAGC CCCGGCAGCA 181 CCCCAGGAGC CCCGGCAGCA CCCCAGGAGC CCCGGCAGCA CCCCAGGAGC CCCGGCAGCA 241 CCCCAGGAGC CCCGGCAGCA CCCCAGGAGC CCCGGCAGCA CCCCAGGAGC CCCGGCAGCA 301 CCCCAGGAGC CCCGGCAGCA CCCCAGGAGC CCCGGCAGCA CCCCAGGAGC CCCGGCAGCA 361 CCCCAGGAGC CCCGGCAGCA CCCCAGGAGC CCCGGCAGCA CCCCAGGAGC CCCGGCAGCA 421 CCCCAGGAGC CCCGGCAGGA CCCCAGGAGC CCCGGCAGCA CCCCAGGAGC CCCGGCAGCA 481 CCCCAGGAGC CCCGGCAGCA CCCCACCCCC CCCCCGGAGG GGGATCCCGG CGCGCCACCC 541 TCCCCCGGAG GGGGATCCCG GCGCGCCACC CTCCCCCGGA GGGGGATCCC GGCGCGCCAC 601 CCTCCCCCGG AGGGGGATCC CGGCGCGCCA CCCTCCCCCG GAGGGGGATC CCGGCGCGCC 661 ACCCTCCCCG GCAACAACCT GTTGCCATGT ATGGCGATTT GTATCAGTCA CAAGCACACA 721 ACCCCTGCTA GTATTAATGG TGTTTAAAAC GTTCTACACG TACGGCGGAC CGCATCCGTC 781 GCAAGCACGC GCATATAACC CCCAAATGCA CCATGATGAG AAGCACAGCC ACGCGTCAAA 841 AAACTTTAAA AACATCGTTA TCCAATATCA TTAAAAACCA CACCGAAATT TACACAGGTA 901 GCACGTCACC GTGTTAGTGT CACCCACTGT ACACAAGGCG TGTCGTATAT GTAGTATAGG 961 TATTTGATGA GGCGGAAGCA TATCCCGCTT CCAGCGAACG GAAATAAGAA TCATCCGTTC 1021 CAGCATTTAT TCAAAGGGGG CACAGAGGAT TCACATTGTT TAGAGAGAGT TTTTCTTAGT 1081 CACCATTCCA TACTTGGGCA GTATTGGCCT ACGATTTGGG CGACGTTTCA GGCTGGTCTA 1141 TTCTCCGTCC ACTTTTCCCC GGCTATTCTG TCCCAGCATA GGCTCTTGAA ATAAACAATG 1201 TTTACCGAGT Agaattc //