LOCUS       pOME0240P      1217 bp    DNA     linear   VRL 27-AUG-2012
DEFINITION  T15 
            Human herpesvirus 8 strain JSC-1 clone BAC16, complete genome.
ACCESSION   GQ994935
VERSION     GQ994935.1  GI:261853473
KEYWORDS    .
SOURCE      Human herpesvirus 8 (Kaposi's sarcoma-associated herpesvirus)
  ORGANISM  Human herpesvirus 8
            Viruses; dsDNA viruses, no RNA stage; Herpesvirales; Herpesviridae;
            Gammaherpesvirinae; Rhadinovirus.
REFERENCE   1  (bases 1 to 138146)
  AUTHORS   Brulois,K.F., Chang,H., Lee,A.S., Ensser,A., Wong,L.Y., Toth,Z.,
            Lee,S.H., Lee,H.R., Myoung,J., Ganem,D., Oh,T.K., Kim,J.F.,
            Gao,S.J. and Jung,J.U.
  TITLE     Construction and manipulation of a new Kaposi's sarcoma-associated
            herpesvirus Bacterial artificial chromosome clone
  JOURNAL   J. Virol. 86 (18), 9708-9720 (2012)
   PUBMED   22740391
REFERENCE   2  (bases 1 to 138146)
  AUTHORS   Brulois,K., Lee,A. and Chang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-SEP-2009) Molecular Microbiology and Immunology,
            University of Southern California, 1450 Biggy Street, Los Angeles,
            CA 90033, USA
FEATURES             Location/Qualifiers
     repeat_region   <1..56
                     /rpt_family="LIR1"
                     /rpt_type=inverted
     source          <1..>1217
                     /organism="Human herpesvirus 8"
                     /mol_type="genomic DNA"
                     /strain="JSC-1"
                     /db_xref="taxon:37296"
                     /clone="BAC16"
                     /note="infectious BAC clone harboring full-length KSHV
                     genome; derived from rKSHV.219, KSHV-infected JSC1
                     primary effusion lymphoma cell line"
     Site            1..7
                     /site_type="mutagenized site"
                     /label="5' RE site"
     misc_RNA        7..1211
                     /label="K4.7 (T1.5) - Ganem lab 2014"
     misc_RNA        7..1211
                     /note="corresp. pos."
                     /label="K4.7 (T1.5) - Yuan lab 2004"
     misc_RNA        7..1211
                     /note="5' end approx."
                     /note="corresp. pos."
                     /label="K4.7 (T1.5) - Chang/Moore lab 2011"
     misc_RNA        7..1211
                     /note="corresp. to 5' end ID'd by 2005 Taylor et al.
                     (Chang/Moore lab)"
                     /note="corresp. to PAN RNA 3' end ID'd by KSHV 2.0"
                     /note="corresp. pos."
                     /label="K4.5 (T6.1) - Chang/Moore lab 2005/2011, Ganem
                     lab 2014"
     repeat_region   58..497
                     /note="22 copies"
                     /rpt_family="DR1"
                     /rpt_type=direct
     repeat_region   511..665
                     /note="5 copies"
                     /rpt_family="DR2"
                     /rpt_type=direct
     polyA_signal    870..875
                     /label="PAS K4.7(T1.5) - Schifano guess"
     polyA_site      885
                     /note="corresp. pos."
                     /label="TTS K4.7(T1.5) - Zheng lab 2013"
     polyA_site      961
                     /note="not confirmed by 3' RACE, corresp. pos."
                     /label="TTS K4.7(T1.5) - Zheng lab 2013"
     misc_RNA        1131..1211
                     /note="5' end not determine, est. based on Fig. 2"
                     /label="K4.5 (T6.1, as-K5-K6) - Ganem lab 2014"
     polyA_signal    1190..1195
                     /label="PAS K4.7(T1.5) - Schifano guess"
     polyA_site      1210
                     /note="corresp. pos."
                     /label="TTS K4.7(T1.5) - Zheng lab 2013"
     Site            1212..1217
                     /site_type="mutagenized site"
                     /label="3' RE site"
ORIGIN
        1 ggtaccGCGG CGGCACGTGG GACGGATCTC TTGGATTTAC CCGTAACGAG GAGCGGCGCA
       61 CCCCAGGAGC CCCGGCAGCA CCCCAGGAGC CCCGGCAGCA CCCCAGGAGC CCCGGCAGCA
      121 CCCCAGGAGC CCCGGCAGCA CCCCAGGAGC CCCGGCAGCA CCCCAGGAGC CCCGGCAGCA
      181 CCCCAGGAGC CCCGGCAGCA CCCCAGGAGC CCCGGCAGCA CCCCAGGAGC CCCGGCAGCA
      241 CCCCAGGAGC CCCGGCAGCA CCCCAGGAGC CCCGGCAGCA CCCCAGGAGC CCCGGCAGCA
      301 CCCCAGGAGC CCCGGCAGCA CCCCAGGAGC CCCGGCAGCA CCCCAGGAGC CCCGGCAGCA
      361 CCCCAGGAGC CCCGGCAGCA CCCCAGGAGC CCCGGCAGCA CCCCAGGAGC CCCGGCAGCA
      421 CCCCAGGAGC CCCGGCAGGA CCCCAGGAGC CCCGGCAGCA CCCCAGGAGC CCCGGCAGCA
      481 CCCCAGGAGC CCCGGCAGCA CCCCACCCCC CCCCCGGAGG GGGATCCCGG CGCGCCACCC
      541 TCCCCCGGAG GGGGATCCCG GCGCGCCACC CTCCCCCGGA GGGGGATCCC GGCGCGCCAC
      601 CCTCCCCCGG AGGGGGATCC CGGCGCGCCA CCCTCCCCCG GAGGGGGATC CCGGCGCGCC
      661 ACCCTCCCCG GCAACAACCT GTTGCCATGT ATGGCGATTT GTATCAGTCA CAAGCACACA
      721 ACCCCTGCTA GTATTAATGG TGTTTAAAAC GTTCTACACG TACGGCGGAC CGCATCCGTC
      781 GCAAGCACGC GCATATAACC CCCAAATGCA CCATGATGAG AAGCACAGCC ACGCGTCAAA
      841 AAACTTTAAA AACATCGTTA TCCAATATCA TTAAAAACCA CACCGAAATT TACACAGGTA
      901 GCACGTCACC GTGTTAGTGT CACCCACTGT ACACAAGGCG TGTCGTATAT GTAGTATAGG
      961 TATTTGATGA GGCGGAAGCA TATCCCGCTT CCAGCGAACG GAAATAAGAA TCATCCGTTC
     1021 CAGCATTTAT TCAAAGGGGG CACAGAGGAT TCACATTGTT TAGAGAGAGT TTTTCTTAGT
     1081 CACCATTCCA TACTTGGGCA GTATTGGCCT ACGATTTGGG CGACGTTTCA GGCTGGTCTA
     1141 TTCTCCGTCC ACTTTTCCCC GGCTATTCTG TCCCAGCATA GGCTCTTGAA ATAAACAATG
     1201 TTTACCGAGT Agaattc
//