LOCUS pOME0241M 1217 bp DNA linear VRL 27-AUG-2012 DEFINITION Reverse compl T15 pOME0240 Human herpesvirus 8 strain JSC-1 clone BAC16, complete genome. ACCESSION GQ994935 VERSION GQ994935.1 GI:261853473 KEYWORDS . SOURCE Human herpesvirus 8 (Kaposi's sarcoma-associated herpesvirus) ORGANISM Human herpesvirus 8 Viruses; dsDNA viruses, no RNA stage; Herpesvirales; Herpesviridae; Gammaherpesvirinae; Rhadinovirus. REFERENCE 1 (bases 1 to 138146) AUTHORS Brulois,K.F., Chang,H., Lee,A.S., Ensser,A., Wong,L.Y., Toth,Z., Lee,S.H., Lee,H.R., Myoung,J., Ganem,D., Oh,T.K., Kim,J.F., Gao,S.J. and Jung,J.U. TITLE Construction and manipulation of a new Kaposi's sarcoma-associated herpesvirus Bacterial artificial chromosome clone JOURNAL J. Virol. 86 (18), 9708-9720 (2012) PUBMED 22740391 REFERENCE 2 (bases 1 to 138146) AUTHORS Brulois,K., Lee,A. and Chang,H. TITLE Direct Submission JOURNAL Submitted (21-SEP-2009) Molecular Microbiology and Immunology, University of Southern California, 1450 Biggy Street, Los Angeles, CA 90033, USA COMMENT Reverse compl sequence of T15 FEATURES Location/Qualifiers source <1..>1217 /organism="Human herpesvirus 8" /mol_type="genomic DNA" /strain="JSC-1" /db_xref="taxon:37296" /clone="BAC16" /note="infectious BAC clone harboring full-length KSHV genome; derived from rKSHV.219, KSHV-infected JSC1 primary effusion lymphoma cell line" Site 1..6 /site_type="mutagenized site" /label="5' RE site" misc_RNA complement(7..1211) /note="corresp. pos." /label="K4.7 (T1.5) - Yuan lab 2004" misc_RNA complement(7..1211) /note="corresp. to 5' end ID'd by 2005 Taylor et al. (Chang/Moore lab)" /note="corresp. to PAN RNA 3' end ID'd by KSHV 2.0" /note="corresp. pos." /label="K4.5 (T6.1) - Chang/Moore lab 2005/2011, Ganem lab 2014" misc_RNA complement(7..1211) /note="5' end not determine, est. based on Fig. 2" /label="K4.5 (T6.1, as-K5-K6) - Ganem lab 2014" misc_RNA complement(7..1211) /note="5' end approx." /note="corresp. pos." /label="K4.7 (T1.5) - Chang/Moore lab 2011" misc_RNA complement(7..1211) /label="Reverse compliment of T15" Site 1212..1217 /site_type="mutagenized site" /label="3' RE" ORIGIN 1 gaattcTACT CGGTAAACAT TGTTTATTTC AAGAGCCTAT GCTGGGACAG AATAGCCGGG 61 GAAAAGTGGA CGGAGAATAG ACCAGCCTGA AACGTCGCCC AAATCGTAGG CCAATACTGC 121 CCAAGTATGG AATGGTGACT AAGAAAAACT CTCTCTAAAC AATGTGAATC CTCTGTGCCC 181 CCTTTGAATA AATGCTGGAA CGGATGATTC TTATTTCCGT TCGCTGGAAG CGGGATATGC 241 TTCCGCCTCA TCAAATACCT ATACTACATA TACGACACGC CTTGTGTACA GTGGGTGACA 301 CTAACACGGT GACGTGCTAC CTGTGTAAAT TTCGGTGTGG TTTTTAATGA TATTGGATAA 361 CGATGTTTTT AAAGTTTTTT GACGCGTGGC TGTGCTTCTC ATCATGGTGC ATTTGGGGGT 421 TATATGCGCG TGCTTGCGAC GGATGCGGTC CGCCGTACGT GTAGAACGTT TTAAACACCA 481 TTAATACTAG CAGGGGTTGT GTGCTTGTGA CTGATACAAA TCGCCATACA TGGCAACAGG 541 TTGTTGCCGG GGAGGGTGGC GCGCCGGGAT CCCCCTCCGG GGGAGGGTGG CGCGCCGGGA 601 TCCCCCTCCG GGGGAGGGTG GCGCGCCGGG ATCCCCCTCC GGGGGAGGGT GGCGCGCCGG 661 GATCCCCCTC CGGGGGAGGG TGGCGCGCCG GGATCCCCCT CCGGGGGGGG GGTGGGGTGC 721 TGCCGGGGCT CCTGGGGTGC TGCCGGGGCT CCTGGGGTGC TGCCGGGGCT CCTGGGGTCC 781 TGCCGGGGCT CCTGGGGTGC TGCCGGGGCT CCTGGGGTGC TGCCGGGGCT CCTGGGGTGC 841 TGCCGGGGCT CCTGGGGTGC TGCCGGGGCT CCTGGGGTGC TGCCGGGGCT CCTGGGGTGC 901 TGCCGGGGCT CCTGGGGTGC TGCCGGGGCT CCTGGGGTGC TGCCGGGGCT CCTGGGGTGC 961 TGCCGGGGCT CCTGGGGTGC TGCCGGGGCT CCTGGGGTGC TGCCGGGGCT CCTGGGGTGC 1021 TGCCGGGGCT CCTGGGGTGC TGCCGGGGCT CCTGGGGTGC TGCCGGGGCT CCTGGGGTGC 1081 TGCCGGGGCT CCTGGGGTGC TGCCGGGGCT CCTGGGGTGC TGCCGGGGCT CCTGGGGTGC 1141 TGCCGGGGCT CCTGGGGTGC GCCGCTCCTC GTTACGGGTA AATCCAAGAG ATCCGTCCCA 1201 CGTGCCGCCG Cggtacc //