LOCUS pOME0275 711 bp DNA linear UNA 14-OCT-2015 DEFINITION Human herpesvirus 8 strain JSC-1 clone BAC16, complete genome. TO_7 ACCESSION GQ994935 VERSION GQ994935.1 GI:261853473 KEYWORDS . SOURCE Human herpesvirus 8 Viruses; dsDNA viruses, no RNA stage; (Kaposi's sarcoma-associated herpesvirus) ORGANISM Human herpesvirus 8 Viruses; dsDNA viruses, no RNA stage; Herpesvirales; Herpesviridae; Gammaherpesvirinae; Rhadinovirus. REFERENCE 1 (bases 1 to 138146) AUTHORS Brulois,K.F., Chang,H., Lee,A.S., Ensser,A., Wong,L.Y., Toth,Z., Lee,S.H., Lee,H.R., Myoung,J., Ganem,D., Oh,T.K., Kim,J.F., Gao,S.J. and Jung,J.U. TITLE Construction and manipulation of a new Kaposi's sarcoma-associated herpesvirus Bacterial artificial chromosome clone JOURNAL J. Virol. 86 (18), 9708-9720 (2012) PUBMED 22740391 REFERENCE 2 (bases 1 to 138146) AUTHORS Brulois,K., Lee,A. and Chang,H. TITLE Direct Submission JOURNAL Submitted (21-SEP-2009) Molecular Microbiology and Immunology, University of Southern California, 1450 Biggy Street, Los Angeles, CA 90033, USA COMMENT FEATURES Location/Qualifiers misc_RNA complement(1..711) /note="coordinates estimated by looking at Fig, 2" /label="as-ORF65-69 lncRNA - Ganem lab 2010" /ApEinfo_fwdcolor=pink /ApEinfo_revcolor=#ffff80 Site 1..6 /site_type="restriction site" /label=BamHI CDS complement(1..711) /label="as-ORF65-69 lncRNA" /ApEinfo_fwdcolor=#0080ff /ApEinfo_revcolor=#80ffff repeat_region complement(1..11) /note="26 copies" /rpt_family="DR5" /rpt_type=direct /label="as-ORF65-69 lncRNA - Ganem lab 2010(1)" /ApEinfo_label="as-ORF65-69 lncRNA - Ganem lab 2010" /ApEinfo_fwdcolor=#00ffff /ApEinfo_revcolor=pink mRNA 1..711 /note=source? /label=T0.7 /ApEinfo_fwdcolor=pink /ApEinfo_revcolor=pink Site 1..6 /site_type="mutagenized site" /label="Restriction site" CDS 33..215 /codon_start=1 /product="K12" /protein_id="ACY00474.1" /db_xref="GI:261853552" /translation="MDRGLTVFVAVHVPDVLLNGWRWRLGAIPPLVCLLAISVVPPSG QRGPVAFRTRVATGAH" /label="K12 (kaposin)" /ApEinfo_fwdcolor=#0080ff /ApEinfo_revcolor=#80ffff misc_RNA 143..165 /note="corresp. pos." /label=miR-K10 /ApEinfo_fwdcolor=pink /ApEinfo_revcolor=#ffff80 misc_RNA 383..405 /label="miR-K12-5p - miRbase.org" /ApEinfo_fwdcolor=pink /ApEinfo_revcolor=#ffff80 misc_RNA 421..442 /label="miR-K12-3p - miRbase.org" /ApEinfo_fwdcolor=pink /ApEinfo_revcolor=#ffff80 polyA_signal 687..692 /note="corresp. pos." /label="PAS K12 - Gao lab 2014" /ApEinfo_fwdcolor=#ff0080 /ApEinfo_revcolor=pink polyA_site 702 /note="corresp. pos." /label="TTS K12 - Wilson lab 2005, Gao lab 2014" /ApEinfo_fwdcolor=pink /ApEinfo_revcolor=pink Site 705..711 /site_type="mutagenized site" /label="Restriction site" Site 706..711 /site_type="restriction site" /label=EcoRI ORIGIN 1 ggatccCTCC CTCCTCACTC CAATCCCAAT GCATGGATAG AGGCTTAACG GTGTTTGTGG 61 CAGTTCATGT CCCGGATGTG TTACTAAATG GGTGGCGCTG GAGGCTTGGG GCGATACCAC 121 CACTCGTTTG TCTGTTGGCG ATTAGTGTTG TCCCCCCGAG TGGCCAGCGT GGCCCCGTAG 181 CATTCAGGAC ACGAGTTGCA ACGGGCGCGC ACTGAAGCTA GCGTGCCCTC CCAAAGAGTG 241 TCAGTAAAAT AAAATACAAA AGCACAATCA CGGTTGCACC AAGCACAACA TTAAACACAT 301 ACAATGCTGA AGAGCAGGCG TATCGAGGGC ATACCCGTGG CTCATAACAC AGTCACAGTT 361 CAGAAGGCCG GCACGCGGTG TCAACCAGGC CACCATTCCT CTCCGCATTA AAGCACTCGG 421 TGGGGGAGGG TGCCCTGGTT GACACAATGT GCCGCGCATC AACCAGCGCG ACGGAAGTTG 481 GCCTCCAGCA AAGCACATTT TGCACGCAAA TGGCGTCCGC TCTCCCAAAC CACACGAATG 541 GTACCATGGC AAAAAACACT CCCTCAGAAT GTATTGACCT TGTTTGTTAA TGAAATTGTG 601 GCACTGACTT CGGCAGACGC CAAGTGGTGG ATATAGAACC ACCTTTCATG GCAGTACATT 661 GCAGCGTGTG CCACATGTTC AAAAACAATA AACAGATTAA AAGAAgaatt c //