LOCUS       pOME0275       711 bp    DNA     linear   UNA 14-OCT-2015
DEFINITION  Human herpesvirus 8 strain JSC-1 clone BAC16, complete genome. TO_7
ACCESSION   GQ994935
VERSION     GQ994935.1  GI:261853473
KEYWORDS    .
SOURCE      Human herpesvirus 8 Viruses; dsDNA viruses, no RNA stage; (Kaposi's sarcoma-associated herpesvirus)
  ORGANISM  Human herpesvirus 8 Viruses; dsDNA viruses, no RNA stage;
            Herpesvirales; Herpesviridae; Gammaherpesvirinae; Rhadinovirus.
REFERENCE   1  (bases 1 to 138146)
  AUTHORS   Brulois,K.F., Chang,H., Lee,A.S., Ensser,A., Wong,L.Y., Toth,Z.,
            Lee,S.H., Lee,H.R., Myoung,J., Ganem,D., Oh,T.K., Kim,J.F.,
            Gao,S.J. and Jung,J.U.
  TITLE     Construction and manipulation of a new Kaposi's sarcoma-associated
            herpesvirus Bacterial artificial chromosome clone
  JOURNAL   J. Virol. 86 (18), 9708-9720 (2012)
   PUBMED   22740391
REFERENCE   2  (bases 1 to 138146)
  AUTHORS   Brulois,K., Lee,A. and Chang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-SEP-2009) Molecular Microbiology and Immunology,
            University of Southern California, 1450 Biggy Street, Los Angeles,
            CA 90033, USA
COMMENT     
FEATURES             Location/Qualifiers
     misc_RNA        complement(1..711)
                     /note="coordinates estimated by looking at Fig, 2"
                     /label="as-ORF65-69 lncRNA - Ganem lab 2010"
                     /ApEinfo_fwdcolor=pink
                     /ApEinfo_revcolor=#ffff80
     Site            1..6
                     /site_type="restriction site"
                     /label=BamHI
     CDS             complement(1..711)
                     /label="as-ORF65-69 lncRNA"
                     /ApEinfo_fwdcolor=#0080ff
                     /ApEinfo_revcolor=#80ffff
     repeat_region   complement(1..11)
                     /note="26 copies"
                     /rpt_family="DR5"
                     /rpt_type=direct
                     /label="as-ORF65-69 lncRNA - Ganem lab 2010(1)"
                     /ApEinfo_label="as-ORF65-69 lncRNA - Ganem lab 2010"
                     /ApEinfo_fwdcolor=#00ffff
                     /ApEinfo_revcolor=pink
     mRNA            1..711
                     /note=source?
                     /label=T0.7
                     /ApEinfo_fwdcolor=pink
                     /ApEinfo_revcolor=pink
     Site            1..6
                     /site_type="mutagenized site"
                     /label="Restriction site"
     CDS             33..215
                     /codon_start=1
                     /product="K12"
                     /protein_id="ACY00474.1"
                     /db_xref="GI:261853552"
                     /translation="MDRGLTVFVAVHVPDVLLNGWRWRLGAIPPLVCLLAISVVPPSG
                     QRGPVAFRTRVATGAH"
                     /label="K12 (kaposin)"
                     /ApEinfo_fwdcolor=#0080ff
                     /ApEinfo_revcolor=#80ffff
     misc_RNA        143..165
                     /note="corresp. pos."
                     /label=miR-K10
                     /ApEinfo_fwdcolor=pink
                     /ApEinfo_revcolor=#ffff80
     misc_RNA        383..405
                     /label="miR-K12-5p -  miRbase.org"
                     /ApEinfo_fwdcolor=pink
                     /ApEinfo_revcolor=#ffff80
     misc_RNA        421..442
                     /label="miR-K12-3p -  miRbase.org"
                     /ApEinfo_fwdcolor=pink
                     /ApEinfo_revcolor=#ffff80
     polyA_signal    687..692
                     /note="corresp. pos."
                     /label="PAS K12 - Gao lab 2014"
                     /ApEinfo_fwdcolor=#ff0080
                     /ApEinfo_revcolor=pink
     polyA_site      702
                     /note="corresp. pos."
                     /label="TTS K12 - Wilson lab 2005, Gao lab 2014"
                     /ApEinfo_fwdcolor=pink
                     /ApEinfo_revcolor=pink
     Site            705..711
                     /site_type="mutagenized site"
                     /label="Restriction site"
     Site            706..711
                     /site_type="restriction site"
                     /label=EcoRI
ORIGIN
        1 ggatccCTCC CTCCTCACTC CAATCCCAAT GCATGGATAG AGGCTTAACG GTGTTTGTGG
       61 CAGTTCATGT CCCGGATGTG TTACTAAATG GGTGGCGCTG GAGGCTTGGG GCGATACCAC
      121 CACTCGTTTG TCTGTTGGCG ATTAGTGTTG TCCCCCCGAG TGGCCAGCGT GGCCCCGTAG
      181 CATTCAGGAC ACGAGTTGCA ACGGGCGCGC ACTGAAGCTA GCGTGCCCTC CCAAAGAGTG
      241 TCAGTAAAAT AAAATACAAA AGCACAATCA CGGTTGCACC AAGCACAACA TTAAACACAT
      301 ACAATGCTGA AGAGCAGGCG TATCGAGGGC ATACCCGTGG CTCATAACAC AGTCACAGTT
      361 CAGAAGGCCG GCACGCGGTG TCAACCAGGC CACCATTCCT CTCCGCATTA AAGCACTCGG
      421 TGGGGGAGGG TGCCCTGGTT GACACAATGT GCCGCGCATC AACCAGCGCG ACGGAAGTTG
      481 GCCTCCAGCA AAGCACATTT TGCACGCAAA TGGCGTCCGC TCTCCCAAAC CACACGAATG
      541 GTACCATGGC AAAAAACACT CCCTCAGAAT GTATTGACCT TGTTTGTTAA TGAAATTGTG
      601 GCACTGACTT CGGCAGACGC CAAGTGGTGG ATATAGAACC ACCTTTCATG GCAGTACATT
      661 GCAGCGTGTG CCACATGTTC AAAAACAATA AACAGATTAA AAGAAgaatt c
//