LOCUS pOME0294M-real 2924 bp DNA linear UNA FEATURES Location/Qualifiers misc_RNA <1..>2924 /note="corresp. pos." /label="K7.7 (T3.0 lncRNA) - Ganem lab 2010 (Xu et al.)" misc_RNA 1..2924 /note="corresp. pos." /label="K7.7 (T3.0 lncRNA) - Yuan lab 2002" source complement(<1..>2924) /organism="Human herpesvirus 8" /mol_type="genomic DNA" /strain="JSC-1" /db_xref="taxon:37296" /clone="BAC16" /note="infectious BAC clone harboring full-length KSHV genome; derived from rKSHV.219, KSHV-infected JSC1 primary effusion lymphoma cell line" CDS complement(join(<9..15,974..>2918)) /codon_start=1 /product="ORF50" /protein_id="ACY00448.1" /db_xref="GI:261853526" /translation="MAQDDKGKKLRRSCVESFVGLSDELKAQLYQCVLLINDAYETIY DPSDLNRVVEDVCIRIMKECSKLGALCGLFTDINMFNLFCFFRASRMRTKGAAGYNVP CAEASQGIIRILTERILFCTEKAFLTAACSGVSLPPAICKLLHEIYTEMKAKCLGAWR RLVCNRRPIMILTSSLLKLYNTYDTAGLLSEQSRALCLLVFQPVYLPRIMAPLEIMTK GQLAPENFYSITGSAEKRRPITTGKVTGLSYPGSGLMPESLILPILEPGLLPASMVDL SDVLAKPAVILSAPALSQFVISKPHPNMPHTVSIIPFNPSGTDPAFISTWQAASQNMV YNTSTAPLKPATGSSQTVSVKAVAQGAVITATTVPQAMPARGTGGELPVMSASTPARD QVAACFVAENTGDSPDNPSSFLTSCHPCDPNTVIVAQQFQPPQCVTLLQVTCAPSSTP PPDSTVRAPVVQLPTVVPLPASAFLPALAQPEASGEELPGGHDGDQGVPCRDSTAAAT AAEATTPKRKQRSKERSSKKRKALTVPEADTTPSTTTPGTSLGSITTPQDVHATDVAT SEGPSEAQPPLLSLPPPLDVDQSLFALLDEAGPETWDVGSPLSPTDDALLSSILQGLY QLDTPPPLRSPSPASFGPESPADIPSPSGGEYTQLQPVRATSATPANEVQESGTLYQL HQWRNYFRD" /label="ORF50 (RTA)" polyA_site 17 /note="corresp. pos." /label="TTS ORF49 - Gao lab 2014" polyA_site 20 /note="corresp. pos." /label="TTS ORF49 - Damania lab 2006" polyA_signal 31..36 /note="corresp. pos." /label="PAS ORF49 - Gao lab 2014" CDS complement(32..940) /codon_start=1 /product="ORF49" /protein_id="ACY00447.1" /db_xref="GI:261853525" /translation="MTSRRPLKDHLFNHLFRYHYPSWDQILQELDTLSVATLNPDCHV PALNVEKTLYLAKTIQILVQHRQSEPYLVPAARANLAYSLQQLYKLGNDKIRGVINGM LPLVDAGCIGFERELIKGLPRVLTLQYPHTAPLESEPPTADCTEWCLSHFVGASGRLR SEVRDILTTHNGTCAPSFQWMASVVKKFFLVETVIYEDFQDTDFNVQLNLCFFWTAVV QMYQRCIYEQKLVHIISTSLTLLKSTARSFFAWYDLYRPNLGSAALVKYTEHLIRALT PDCSDVELGELCSHLHHCKHALFSIQ" misc_RNA 1787..>2924 /note="corresp. pos." /label="T1.2 lncRNA - Ganem lab 2010 (Xu et al.)" polyA_site 1886 /note="corresp. pos." /label="TTS K7.7 (T3.0 lncRNA) - Zheng lab 2013" misc_RNA 1887..2924 /note="corresp. pos." /label="T1.2 lncRNA - Yuan lab 2002" polyA_signal 1918..1923 /label="PAS T1.2 lncRNA - Schifano guess" ORIGIN 1 GCGGCCGCAC TGTTCCATTT CTAGCTGGAA AAATAACATA TGACTTGTTA CGCACAAATG 61 TTACCACATC CACCCTCGTC TCAAGCGGTT CGAGATGCAG GCTTGTCAGC CCACAGTCCC 121 GAGAATAATT CACAAGCCAC ATGAACTGGT TTCGGCGCCT TGGATCCAAC CCAGACATGT 181 CCAGCATGGT CCGTTTTTTC CTAGCCCGCC ACGAAAAGTC CTCTCAATCC CTGCACGACT 241 AATACACCTG TTCGAAGACG AGCATTTACG TGGCGACCAT GTAGACTTGC TGTCGACAGG 301 TTTTTTTTGT TTCCAAGTCG ACGTGCAATT TTAGACATAG GACTTTCAGG AGCATTTACT 361 GTCAAAGATG GTTCTTTTTG AAAAAATGGT GCGACCGGTA GGTGACTTTC CTCCCTCGTG 421 TGCAGGGCAA CACGCAACAA TCCTATAGGG ATTGAAGCCT CGCCTCTGCC GGCCTGCGAG 481 GGTGTTTTAC CCTCTCCGTG GTGAGACACG TCAGGCGCCA GCCCCCAAGA CTAAGGTCCC 541 CGCGGCACAC CCCCATAACC TCTCAGTTTT GAGACCCGTC AGGGAATTAC TCGAGAGAGA 601 GTTTTGGATA CGTCGGTCGC AGGTGATCAC CGTCGTACGG CAATTATTGT GGGGAATAGA 661 ACAGCAACGG TTCAAACATG TTGACGACGT CCCTTATTCG GTTTAAGCGG GATCGGCGCC 721 CTTGGTCCAT GCCGAGCGAA ACAGCCACGA CCTGGTTATA GACTTACCAG AAACGTTCCA 781 TATCCCAGAA GAGTTGCAAA TCTCGCCCAT GCACCGTCAG ACCTAACTCC CACCGCTGCC 841 TGTCCCATAG ATTGAGGACT TCATAGACTA GGGTCCTGCC CATTACTATG GATTTGTCTA 901 CCAACTTGTC CACTAGAAAT TCCCCGGAAG AGCTACAGTA ACATTTTTGA TACTGTGCGG 961 TGAGAGAGGA ATCCCATTCT TCGAAGCCGC CAGGACACAC CTTTCGAAGC AGCCGGAGAG 1021 CCTGCTTGAC TTCCGGGTTG AGATGGTCAC ACACGAGGAA TATTTACTGC GTATGCTTTG 1081 TTAGATGCTA GGGTCACTGG ATTTATCTCA CCACCTTCTA CACACGTAAG CCTAATACTT 1141 TCTTACAAGG TTCGAACCAC GCGATACACC AGACAAATGT CTGTAATTGT ACAAATTGGA 1201 AAAGACGAAA AAAGCACGGA GAGCTTACTC CTGGTTTCCG CGCCGGCCCA TGTTGCACGG 1261 TACGCGTCTC CGTAGGGTTC CGTAATAAGC CTAGGAGTGC CTCTCCTAGA ATAAGACGTG 1321 TCTTTTCCGT AAAGACTGTC GGCGTACGTC GCCCCACTCG GACGGAGGTC GGTATACATT 1381 CGATGATGTG CTTTATATGT GACTTTACTT CCGGTTTACG GACCCCCGGA CTCCGCTGAG 1441 CAGACGTTAG CCTCCGGGTA ATACTATAAT TGGAGAAGGG ATGACTTCGA GATGTTGTGC 1501 ATGCTATGGC GGCCCGACGA GAGACTCGTC AGGTCCCGGG AGACGGAAAA CCAAAAGGTT 1561 GGCCAGATGG AAGGCTCCTA ATACCGCGGC GACCTCTAGT ACTGGTTCCC AGTCGAGCGG 1621 GGACTTTTGA AAATGTCGTA GTGGCCAAGA CGACTCTTTG CGGCCGGTTA ATGGTGGCCG 1681 TTCCAGTGAC CTGACAGGAT AGGTCCTTCG CCAGAGTACG GTCTTAGAAA TTAAAACGGT 1741 TAGGACCTCG GTCCTGACAA CGGCCGAAGG TACCATCTGG AGTCGCTACA CGACCGTTTT 1801 GGGCGGCAAT AAGACTCGCG GGGACGGGAC TCGGTCAAAC AGTAATCGTT TGGGGTAGGG 1861 TTGTACGGCG TGTGGCAGTC GTAGTAGGGG AAATTGGGTA GCCCATGTCT GGGCCGCAAA 1921 TAATCATGCA CCGTCCGGCG CAGTGTCTTA TACCACATGT TGTGTAGGTG GCGCGGGAAT 1981 TTTGGCCGGT GGCCATCAAG TGTCTGCCAC AGTCAGTTCC GCCAACGAGT TCCCCGGCAC 2041 TAATGACGCT GTTGCCACGG CGTCCGTTAC GGTCGCGCCC CATGGCCTCC CCTCAACGGA 2101 CATTACAGTC GCAGGTGAGG ACGTTCTCTA GTCCAGCGAC GTACAAAACA GCGTCTCTTG 2161 TGGCCTCTAA GAGGGCTGTT GGGCTCGAGA AAGGACTGCA GTACAGTGGG AACGCTAGGC 2221 TTGTGCCAAT ATCACCGGGT CGTTAAAGTT GGTGGCGTTA CGCAATGCAA CAACGTCCAA 2281 TGGACACGGG GGAGAAGCTG TGGTGGGGGG CTAAGTTGTC AGGCCCGGGG CCACCACGTC 2341 AACGGTTGTC ATCAGGGAGA CGGCCGGTCG CGCAAGGAGG GCCGCGAGCG GGTTGGTCTT 2401 CGGAGCCCGC TTCTCGAAGG CCCGCCAGTA CTGCCTCTGG TTCCACACGG CACATCTCTA 2461 AGTTGCCGCC GCCGATGCCG CCGTCTCCGC TGTTGTGGGT TTGCTTTCGT CTCTTCGTTT 2521 CTCTCCTCGA GTTTCTTCGC ATTCCGAAAC TGGCACGGTC TTCGGCTGTG GTGCGGTAGC 2581 TGGTGCTGTG GACCATGGAG AAACCCTAGT TAATGGTGGG GGGTCCTACA CGTGCGGTGC 2641 CTACAGCGGT GCAGACTCCC TGGTAGCCTC CGTGTTGGGG GCGATGACAG CAATGGGGGC 2701 GGTGACCTGC ATCTAGTCTC AGATAAGCGG GACAATCTGC TTCGCCCGGG ACTTTGTACC 2761 CTACAGCCCA GCGGAGAGAG GGGGTGACTG CTGCGCGACA ACAGGTCATA AGACGTTCCT 2821 GACATGGTCG ACCTGTGCGG TGGCGGAGAC GCAGTGGGAG GGGGCGAAGG AAGCCGGGCC 2881 TCAGAGGCCG CCTATATGGC AGTGGAAGAC CACCTCTCGA ATTC //