LOCUS       pOME0297       711 bp    DNA     linear   UNA 14-OCT-2015
DEFINITION  Human herpesvirus 8 strain JSC-1 clone BAC16, complete genome.
ACCESSION   GQ994935
VERSION     GQ994935.1  GI:261853473
KEYWORDS    .
SOURCE      Human herpesvirus 8 Viruses; dsDNA viruses, no RNA stage; (Kaposi's sarcoma-associated herpesvirus)
  ORGANISM  Human herpesvirus 8 Viruses; dsDNA viruses, no RNA stage;
            Herpesvirales; Herpesviridae; Gammaherpesvirinae; Rhadinovirus.
REFERENCE   1  (bases 1 to 138146)
  AUTHORS   Brulois,K.F., Chang,H., Lee,A.S., Ensser,A., Wong,L.Y., Toth,Z.,
            Lee,S.H., Lee,H.R., Myoung,J., Ganem,D., Oh,T.K., Kim,J.F.,
            Gao,S.J. and Jung,J.U.
  TITLE     Construction and manipulation of a new Kaposi's sarcoma-associated
            herpesvirus Bacterial artificial chromosome clone
  JOURNAL   J. Virol. 86 (18), 9708-9720 (2012)
   PUBMED   22740391
REFERENCE   2  (bases 1 to 138146)
  AUTHORS   Brulois,K., Lee,A. and Chang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-SEP-2009) Molecular Microbiology and Immunology,
            University of Southern California, 1450 Biggy Street, Los Angeles,
            CA 90033, USA
COMMENT     
FEATURES             Location/Qualifiers
     Site            join(1..6,1^2)
                     /site_type="restriction site"
                     /note="Name: EcoRI"
                     /note="Pattern: gaattc"
                     /note="cut_0_on_positive_strand: 1^2"
                     /note="cut_0_on_negative_strand: 5^6"
                     /note="inhibited_by: 5': N6-methyladenosine"
                     /note="star_activity: yes"
                     /note="site_type: other"
                     /note="restriction site"
                     /label=EcoRI
     misc_RNA        complement(7..705)
                     /note="coordinates estimated by looking at Fig, 2"
                     /label="as-ORF65-69 lncRNA - Ganem lab 2010"
                     /ApEinfo_fwdcolor=pink
                     /ApEinfo_revcolor=#ffff80
     CDS             complement(7..705)
                     /label="as-ORF65-69 lncRNA"
                     /ApEinfo_fwdcolor=#0080ff
                     /ApEinfo_revcolor=#80ffff
     mRNA            7..705
                     /note=source?
                     /label=T0.7
                     /ApEinfo_fwdcolor=pink
                     /ApEinfo_revcolor=pink
     polyA_site      10
                     /note="corresp. pos."
                     /label="TTS K12 - Wilson lab 2005, Gao lab 2014"
                     /ApEinfo_fwdcolor=pink
                     /ApEinfo_revcolor=pink
     polyA_signal    20..25
                     /note="corresp. pos."
                     /label="PAS K12 - Gao lab 2014"
                     /ApEinfo_fwdcolor=#ff0080
                     /ApEinfo_revcolor=pink
     misc_RNA        270..291
                     /label="miR-K12-3p -  miRbase.org"
                     /ApEinfo_fwdcolor=pink
                     /ApEinfo_revcolor=#ffff80
     misc_RNA        307..329
                     /label="miR-K12-5p -  miRbase.org"
                     /ApEinfo_fwdcolor=pink
                     /ApEinfo_revcolor=#ffff80
     CDS             497..679
                     /codon_start=1
                     /product="K12"
                     /protein_id="ACY00474.1"
                     /db_xref="GI:261853552"
                     /translation="MDRGLTVFVAVHVPDVLLNGWRWRLGAIPPLVCLLAISVVPPSG
                     QRGPVAFRTRVATGAH"
                     /label="K12 (kaposin)"
                     /ApEinfo_fwdcolor=#0080ff
                     /ApEinfo_revcolor=#80ffff
     misc_RNA        547..569
                     /note="corresp. pos."
                     /label=miR-K10
                     /ApEinfo_fwdcolor=pink
                     /ApEinfo_revcolor=#ffff80
     repeat_region   complement(701..705)
                     /note="26 copies"
                     /rpt_family="DR5"
                     /rpt_type=direct
                     /label="as-ORF65-69 lncRNA - Ganem lab 2010(1)"
                     /ApEinfo_label="as-ORF65-69 lncRNA - Ganem lab 2010"
                     /ApEinfo_fwdcolor=#00ffff
                     /ApEinfo_revcolor=pink
     Site            join(706..711,706^707)
                     /site_type="restriction site"
                     /note="Name: BamHI"
                     /note="Pattern: ggatcc"
                     /note="cut_0_on_positive_strand: 706^707"
                     /note="cut_0_on_negative_strand: 710^711"
                     /note="inhibited_by: 5': N4-methylcytosine"
                     /note="star_activity: yes"
                     /note="site_type: other"
                     /note="restriction site"
                     /label=BamHI
ORIGIN
        1 GAATTCAAGA AAATTAGACA AATAACAAAA ACTTGTACAC CGTGTGCGAC GTTACATGAC
       61 GGTACTTTCC ACCAAGATAT AGGTGGTGAA CCGCAGACGG CTTCAGTCAC GGTGTTAAAG
      121 TAATTGTTTG TTCCAGTTAT GTAAGACTCC CTCACAAAAA ACGGTACCAT GGTAAGCACA
      181 CCAAACCCTC TCGCCTGCGG TAAACGCACG TTTTACACGA AACGACCTCC GGTTGAAGGC
      241 AGCGCGACCA ACTACGCGCC GTGTAACACA GTTGGTCCCG TGGGAGGGGG TGGCTCACGA
      301 AATTACGCCT CTCCTTACCA CCGGACCAAC TGTGGCGCAC GGCCGGAAGA CTTGACACTG
      361 ACACAATACT CGGTGCCCAT ACGGGAGCTA TGCGGACGAG AAGTCGTAAC ATACACAAAT
      421 TACAACACGA ACCACGTTGG CACTAACACG AAAACATAAA ATAAAATGAC TGTGAGAAAC
      481 CCTCCCGTGC GATCGAAGTC ACGCGCGGGC AACGTTGAGC ACAGGACTTA CGATGCCCCG
      541 GTGCGACCGG TGAGCCCCCC TGTTGTGATT AGCGGTTGTC TGTTTGCTCA CCACCATAGC
      601 GGGGTTCGGA GGTCGCGGTG GGTAAATCAT TGTGTAGGCC CTGTACTTGA CGGTGTTTGT
      661 GGCAATTCGG AGATAGGTAC GTAACCCTAA CCTCACTCCT CCCTCGGATC C
//