LOCUS       pOME0241M_consensus      1217 bp    DNA     linear   UNA 
FEATURES             Location/Qualifiers
     source          <1..>1217
                     /organism="Human herpesvirus 8"
                     /mol_type="genomic DNA"
                     /strain="JSC-1"
                     /db_xref="taxon:37296"
                     /clone="BAC16"
                     /note="infectious BAC clone harboring full-length KSHV
                     genome; derived from rKSHV.219, KSHV-infected JSC1
                     primary effusion lymphoma cell line"
     Site            1..6
                     /site_type="mutagenized site"
                     /label="5' RE site"
     misc_RNA        complement(7..1211)
                     /note="corresp. pos."
                     /label="K4.7 (T1.5) - Yuan lab 2004"
     misc_RNA        complement(7..1211)
                     /note="corresp. to 5' end ID'd by 2005 Taylor et al.
                     (Chang/Moore lab)"
                     /note="corresp. to PAN RNA 3' end ID'd by KSHV 2.0"
                     /note="corresp. pos."
                     /label="K4.5 (T6.1) - Chang/Moore lab 2005/2011, Ganem
                     lab 2014"
     misc_RNA        complement(7..1211)
                     /note="5' end not determine, est. based on Fig. 2"
                     /label="K4.5 (T6.1, as-K5-K6) - Ganem lab 2014"
     misc_RNA        complement(7..1211)
                     /note="5' end approx."
                     /note="corresp. pos."
                     /label="K4.7 (T1.5) - Chang/Moore lab 2011"
     misc_RNA        complement(7..1211)
                     /label="Reverse compliment of T15"
     Site            1212..1217
                     /site_type="mutagenized site"
                     /label="3' RE"
ORIGIN
        1 GAATTCTACT CGGTAAACAT TGTTTATTTC AAGAGCCTAT GCTGGGACAG AATAGCCGGG
       61 GAAAAGTGGA CGGAGAATAG ACCAGCCTGA AACGTCGCCC AAATCGTAGG CCAATACTGC
      121 CCAAGTATGG AATGGTGACT AAGAAAAACT CTCTCTAAAC AATGTGAATC CTCTGTGCCC
      181 CCTTTGAATA AATGCTGGAA CGGATGATTC TTATTTCCGT TCGCTGGAAG CGGGATATGC
      241 TTCCGCCTCA TCAAATACCT ATACTACATA TACGACACGC CTTGTGTACA GTGGGTGACA
      301 CTAACACGGT GACGTGCTAC CTGTGTAAAT TTCGGTGTGG TTTTTAATGA TATTGGATAA
      361 CGATGTTTTT AAAGTTTTTT GACGCGTGGC TGTGCTTCTC ATCATGGTGC ATTTGGGGGT
      421 TATATGCGCG TGCTTGCGAC GGATGCGGTC CGCCGTACGT GTAGAACGTT TTAAACACCA
      481 TTAATACTAG CAGGGGTTGT GTGCTTGTGA CTGATACAAA TCGCCATACA TGGCAACAGG
      541 TTGTTGCCGG GGAGGGTGGC GCGCCGGGAT CCCCCTCCGG GGGAGGGTGG CGCGCCGGGA
      601 TCCCCCTCCG GGGNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
      661 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
      721 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
      781 NNNNNNNNNN NNNNNNNNNN NGCCGGGGCT CCTGGGGTGC TGCCGGGGCT CCTGGGGTGC
      841 TGCCGGGGCT CCTGGGGTGC TGCCGGGGCT CCTGGGGTGC TGCCGGGGCT CCTGGGGTGC
      901 TGCCGGGGCT CCTGGGGTGC TGCCGGGGCT CCTGGGGTGC TGCCGGGGCT CCTGGGGTGC
      961 TGCCGGGGCT CCTGGGGTGC TGCCGGGGCT CCTGGGGTGC TGCCGGGGCT CCTGGGGTGC
     1021 TGCCGGGGCT CCTGGGGTGC TGCCGGGGCT CCTGGGGTGC TGCCGGGGCT CCTGGGGTGC
     1081 TGCCGGGGCT CCTGGGGTGC TGCCGGGGCT CCTGGGGTGC TGCCGGGGCT CCTGGGGTGC
     1141 TGCCGGGGCT CCTGGGGTGC GCCGCTCCTC GTTACGG
//
