{"id":2297,"date":"2013-09-10T15:30:00","date_gmt":"2013-09-10T19:30:00","guid":{"rendered":"https:\/\/www.med.unc.edu\/psych\/research\/niral\/niral\/download\/software-pages\/deprecated-software\/"},"modified":"2018-07-02T13:39:35","modified_gmt":"2018-07-02T17:39:35","slug":"deprecated-software","status":"publish","type":"page","link":"https:\/\/www.med.unc.edu\/psych\/research\/niral\/download\/download-software\/deprecated-software\/","title":{"rendered":"Deprecated Software"},"content":{"rendered":"\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
\"UNC<\/td>\nUNCCorticalThickness<\/span><\/a><\/td>\nUNC Cortical Thickness Analysis based on ITK<\/td>\n<\/tr>\n
\"ShapeToolsIcon\"<\/td>\nShapeTools (SPHARM shape analysis<\/a>)<\/td>\nThe SPHARM shape analysis toolset is used for doing local statistical shape analysis. ITK based.<\/td>\n<\/tr>\n
\"FiberTrackingIcon\"<\/td>\nFiberTracking<\/a><\/td>\nThe FT tool is a cross-platform system to explore diffusion tensor images and to reconstruct fiber tracts:
\n\"arrow.gif\" Platform independent
\n\"arrow.gif\" Fiber tracts between ROI
\n\"arrow.gif\" FA and ADC generation<\/td>\n<\/tr>\n
\"DTICheckerIcon\"<\/td>\nDTIChecker<\/a><\/td>\nDTIChecker is a program to check and correct DTI images
\n\"arrow.gif\" Slice artifacts detection
\n\"arrow.gif\" Motion artifacts detection and correction
\n\"arrow.gif\" Average creation<\/td>\n<\/tr>\n
\"MeshValmetIcon\"<\/td>\nMeshValmet<\/a><\/td>\nMeshValmet surface difference evaluation tool<\/td>\n<\/tr>\n
\"itkEMSIcon\"<\/td>\nitkEMS<\/td>\nitkEMS is a program to segment brain tissue
\n\"arrow.gif\" Multi channel support
\n\"arrow.gif\" Fast EM segmentation
\n\"arrow.gif\" XML support for parameters<\/td>\n<\/tr>\n
\"FiberViewerIcon\"<\/td>\nFiberViewer<\/td>\nFiber Viewer is a program to analyze fibers extracted from the Fiber Tracking tool. It provides:
\n\"arrow.gif\" Several methods for clustering
\n\"arrow.gif\" Tools for manipulate fibers
\n\"arrow.gif\" Methods to analyse FA and ADC along fibers<\/td>\n<\/tr>\n
\"ImagineIcon\"<\/td>\nImagine<\/td>\nProgram which create dynamic pipeline
\n\"arrow.gif\" Up to 20 filters (included affine registration and fluid warping)
\n\"arrow.gif\" Easy to use and to parametrize
\n\"arrow.gif\" Wizard assistant for running pipeline automatically<\/td>\n<\/tr>\n
\"IntensityRescalerIcon\"<\/td>\nIntensityRescaler<\/td>\nProgram which rescale image in intensity
\n\"arrow.gif\" Intensity rescaling based on segmentation
\n\"arrow.gif\" User can define regions dynamically
\n\"arrow.gif\" Automatic transfert function generation<\/td>\n<\/tr>\n
\"DofviewIcon\"<\/td>\nDofView<\/td>\nDofView is a tool used to analysis Deformation Field created by the WarpTool or AtlasBuilder software.
\n\"arrow.gif\" Several measurement: Jacobian, Divergence …
\n\"arrow.gif\" Convert Linux\/Solaris DoF to Windows (Imagine) DOF
\n\"arrow.gif\" 3D display of the deformation field<\/td>\n<\/tr>\n
\"Byu2voxIcon\"<\/td>\nByu2vox<\/td>\nByu2Vox is a program that convert a BYU surface to a voxel volume.
\n\"arrow.gif\"Specification of the bounding box
\n\"arrow.gif\"Multi-images processing (batch mode)<\/td>\n<\/tr>\n
\"IrisIcon\"<\/td>\nIris<\/td>\nIRIS is intended help doctors to create 3D models of structures within the brain:
\n\"arrow.gif\" Displays the data in 4 windows.
\n\"arrow.gif\" Build a 3D model of a structure from any volumetric data set
\n\"arrow.gif\" Drawing tools<\/td>\n<\/tr>\n
\"SnapIcon\"<\/td>\nSnap<\/td>\nSnake Automatic Partitioning:
\n\"arrow.gif\"Region-probability snake (competition snake).
\n\"arrow.gif\" Propagation snake stopping at region discontinuities.
\n\"arrow.gif\" Region of interest painting.<\/td>\n<\/tr>\n
\"ValmetIcon\"<\/td>\nValmet<\/td>\nValmet is a tool to improve segmentations. Valmet used several algorithms to compare segmentations in 2D and 3D:
\n\"arrow.gif\" Complex algortihms implemented
\n\"arrow.gif\" Dynamic 2D and 3D vizualisation
\n\"arrow.gif\" Differences color display along the surface<\/td>\n<\/tr>\n
\"ImconvertIcon\"<\/td>\nImconvert<\/td>\nProgram which convert .gipl .hdr .raw . v0 .mha images
\n\"arrow.gif\" Select input\/output type
\n\"arrow.gif\" Select patient orientation
\n\"arrow.gif\" Graphic user interface (very usefull under Windows)<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n","protected":false},"excerpt":{"rendered":"

UNCCorticalThickness UNC Cortical Thickness Analysis based on ITK ShapeTools (SPHARM shape analysis) The SPHARM shape analysis toolset is used for doing local statistical shape analysis. ITK based. FiberTracking The FT tool is a cross-platform system to explore diffusion tensor images and to reconstruct fiber tracts: Platform independent Fiber tracts between ROI FA and ADC generation … Read more<\/a><\/p>\n","protected":false},"author":7371,"featured_media":0,"parent":2282,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"footnotes":"","_links_to":"","_links_to_target":""},"class_list":["post-2297","page","type-page","status-publish","hentry","odd"],"acf":[],"yoast_head":"\nDeprecated Software - Neuro Image Research and Analysis Laboratories<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.med.unc.edu\/psych\/research\/niral\/download\/download-software\/deprecated-software\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Deprecated Software - Neuro Image Research and Analysis Laboratories\" \/>\n<meta property=\"og:description\" content=\"UNCCorticalThickness UNC Cortical Thickness Analysis based on ITK ShapeTools (SPHARM shape analysis) The SPHARM shape analysis toolset is used for doing local statistical shape analysis. 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