Annotations and Resources
10Annotations and Resources
| Array | Files | Notes |
|---|---|---|
| MiniMUGA | Marker Annotations | A list of all valid markers in the MiniMUGA array, including extra information designed to facilitate custom analyses by individual researchers. |
| MiniMUGA | Inbred Consensus Genotypes (all)
Inbred Consensus Genotypes (interactive) |
Consensus genotypes for 116 standard inbred lab strains, 72 CC strains, and 41 BXD strains. Marker annotations can also be included with these downloads. |
| MUGA | probes (mm9) | Reference clusters derived from a set of 2,425 Diversity Outbred mice (1309 male, 1116 female) genotyped across multiple batches. |
| MUGA2 | markers | A list of all valid markers in the MUGA2 array |
| MegaMUGA | probes (mm9) | Reference clusters derived from a set of 500 Diversity Outbred mice (250 male, 250 female) genotyped across multiple batches. |
| GigaMUGA | probes (mm10) | Reference clusters derived from a set of 500 mice spanning classical inbred strains; wild-derived strains; the Collaborative Cross and Diversity Outbred populations; and common laboratory stocks. These samples were processed in 7 batches but genotype-calling was performed on all batches jointly. |