10Annotations and Resources

Array Files Notes
MiniMUGA Marker Annotations A list of all valid markers in the MiniMUGA array, including extra information designed to facilitate custom analyses by individual researchers.
MiniMUGA Inbred Consensus Genotypes (all)

Inbred Consensus Genotypes (interactive)

Consensus genotypes for 116 standard inbred lab strains, 72 CC strains, and 41 BXD strains. Marker annotations can also be included with these downloads.
MUGA probes (mm9)

clusters

Reference clusters derived from a set of 2,425 Diversity Outbred mice (1309 male, 1116 female) genotyped across multiple batches.
MUGA2 markers A list of all valid markers in the MUGA2 array
MegaMUGA probes (mm9)

clusters

Reference clusters derived from a set of 500 Diversity Outbred mice (250 male, 250 female) genotyped across multiple batches.
GigaMUGA probes (mm10)

clusters

Reference clusters derived from a set of 500 mice spanning classical inbred strains; wild-derived strains; the Collaborative Cross and Diversity Outbred populations; and common laboratory stocks. These samples were processed in 7 batches but genotype-calling was performed on all batches jointly.