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Publications

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  1. Kelliher JM, Aljumaah M, Bordenstein SR, Brister JR, Chain PSG, Dundore-Arias JP, Emerson JB, Fernandes VM, Flores R, Gonzalez A. Microbiome data management in action workshop: Atlanta, GA, USA, June 12–13, 2024. Environmental Microbiome, 20, 1, 40, 2025, Springer.
  2. Dubal AC, Sarteau AC, Azcarate-Peril MA, Djukic Z, Ercolino G, Fruih A, Ho J, Lee Z, Roach J, & Valancius M (2025). Exploring the effects of dietary intake on gut microbiome diversity and composition of older adults with Type 1 diabetes: A pilot study. Current Developments in Nutrition, 107550.
  3. Kurz C, Arbeeva L, Azcarate-Peril MA, Stewart DA, Lascelles BD, Loeser RF, & Nelson A E (2025). Exploring associations among pro-inflammatory cytokines, osteoarthritis, and gut microbiome composition in individuals with obesity using machine learning. Osteoarthritis and Cartilage Open, 7(2), 7, 2, 100603.
  4. Moraes SM, Araújo TT, Abuna GF, Dionízio A, Carvalho TS, Reis FN, Pardi V, Murata RM, & Buzalaf M A R (2025). Impact of TiF4 varnish on the oral biofilm microbiome in high-caries-risk patients. JDR Clinical & Translational Research, 23800844251348180.
  5. Vogel SC, Murgueitio N, Huth N, Sem K, Knickmeyer RC, Short SJ, Mills-Koonce R, Propper C, & Wagner NJ (2025). Longitudinal associations between the infant gut microbiome and negative affect in toddlerhood. Development and Psychopathology, 1-13.
  6. Dirks B, Davis TL, Carnero EA, Corbin KD, Smith SR, Rittmann BE, & Krajmalnik-Brown R (2025). Methanogenesis associated with altered microbial production of short-chain fatty acids and human-host metabolizable energy. The ISME Journal, 19(1), wraf103.
  7. Zhu X, Chen R, Ness RM, Naik RD, Murff HJ, Zhang H, Xu Y, Benante KA, Azcarate-Peril MA, Zheng Y, Wang J. Evaluating Intermittent Dosing of Aspirin for Colorectal Cancer Chemoprevention. Cancer Prevention Research. 2025 Mar 20:OF1-4.
  8. Cobos-Uribe C, Dhingra R, Almond MA, Alexis NE, Peden DB, Roach J, Rebuli ME. Human Sputum Microbiome Composition and Sputum Inflammatory Cell Profiles Are Altered with Controlled Wood Smoke Exposure as a Model for Wildfire Smoke. American Journal of Respiratory and Critical Care Medicine. 2025 May 19(ja).
  9. Tola YH, Wagoner K, Strand MK, Rueppell O, Tarpy DR. The gut microbiome differs between hygiene-performing and non-hygiene-performing worker honey bees. Insectes Sociaux. 2025 Mar 6:1-8
  10. Lee M, Vindenes HK, Fouladi F, Shigdel R, Ward JM, Peddada SD, London SJ, Bertelsen RJ. Oral microbiota related to allergy in Norwegian adults. Journal of Allergy and Clinical Immunology: Global. 2025 May 1;4(2):100435.
  11. Moss AD. On Fecal Microbiota Transplants: Model Efficiency and Reproducibility (Doctoral dissertation, The University of North Carolina at Charlotte).
  12. Easter QT, Huynh KLA, Stolf CS, Xie J, Matuck BF, Hasuike A, Alvarado-Martinez Z, Chen Z, Ribeiro AA, Pareek N(2025). CD38+ endothelial remodeling defines spatially diverse vasculopathy programs in rapidly advancing oral inflammation. bioRxiv. Published July 29, 2025. Cold Spring Harbor Laboratory.
  13. Arbeeva L, Walker T, Enomoto M, Stevens C, Azcarate-Peril MA, Loeser RF, Golightly YM, Lascelles BD, Nelson AE. Cross-sectional associations of radiographic multiple joint osteoarthritis and symptoms, laboratory values and the gut microbiota in humans and pet dogs. Osteoarthritis and Cartilage. 2025 Apr 1;33:S390-1.
  14. Arbeeva L, Alvarez C, Walker T, Azcarate-Peril MA, Loeser RF, Golightly YM, Lascelles BD, Huebner JL, Kraus VB, Nelson AE. Inflammation, Intestinal Permeability, and Microbiome Diversity: Uncovering Systemic Drivers of Multiple Joint Osteoarthritis. Osteoarthritis and Cartilage. 2025 Apr 1;33:S112.
  15. Arbeeva L, Walker T, Enomoto M, Stevens C, Azcarate-Peril MA, Loeser RF, Golightly YM, Lascelles BD, Nelson AE. Cross-sectional associations between the gut microbiota and measures of intestinal permeability. Osteoarthritis and Cartilage. 2025 Apr 1;33:S391.
  16. Tang X, Li Y, Qin Y. Fully automated quantification of knee joint fluid based on deep learning: Data from magnetic resonance imaging of healthy adults. Osteoarthritis and Cartilage. 2025 Apr 1;33:S111-2.
  17. Nieman DC, Sakaguchi CA, Williams JC, Lawson J, Lambirth KC, Omar AM, Mulani FA, Zhang Q. Gut Prevotella copri abundance linked to elevated post-exercise inflammation. Journal of Sport and Health Science. 2025 Apr 5:101039.
  18. Aljumaah MR, Roach J, Hu Y, Gunstad J, Azcarate-Peril MA. Microbial dipeptidyl peptidases of the S9B family as host-microbe isozymes. Science Advances. 2025 Apr 2;11(14):eads5721.
  19. Moore M, Whittington HD, Knickmeyer R, Azcarate-Peril MA, Bruno-Barcena JM. Non-stochastic reassembly of a metabolically cohesive gut consortium shaped by N-acetyl-lactosamine-enriched fibers. Gut Microbes. 2025 Dec;17(1):2440120. doi: 10.1080/19490976.2024.2440120. Epub 2024 Dec 18. PMID: 39695352; PMCID: PMC11660306.
  1. Wang M, Rousseau B, Qiu K, Huang G, Zhang Y, Su H, Le Bihan-Benjamin C, Khati I, Artz O, Foote MB, Cheng YY, Lee KH, Miao MZ, Sun Y, Bousquet PJ, Hilmi M, Dumas E, Hamy AS, Reyal F, Lin L, Armistead PM, Song W, Vargason A, Arthur JC, Liu Y, Guo J, Zhou X, Nguyen J, He Y, Ting JP, Anselmo AC, Huang L. Killing tumor-associated bacteria with a liposomal antibiotic generates neoantigens that induce anti-tumor immune responses. Nat Biotechnol. 2024 Aug;42(8):1263-1274. doi: 10.1038/s41587-023-01957-8. Epub 2023 Sep 25. PMID: 37749267.
  2. Babikow E, Ghaltakhchyan N, Livingston T, Qu Y, Liu C, Hoxie A, Sulkowski T, Bocklage C, Marsh A, Phillips ST, Mitchell KB, Ribeiro AA, Jackson TH, Roach J Wu D, Divaris K, Jacox LA. Longitudinal Microbiome Changes in Supragingival Biofilm Transcriptomes Induced by Orthodontics. JDR Clin Trans Res. 2024 Jul;9(3):265-276. doi: 10.1177/23800844231199393. Epub 2023 Oct 24. PMID: 37876206; PMCID: PMC11184915.
  3. Eckhoff AM, Fletcher AA, Kelly MS, Dohlman A, McIntyre CA, Shen X, Iyer MK, Nussbaum DP, Allen PJ. Comprehensive Assessment of the Intrinsic Pancreatic Microbiome. Ann Surg. 2024 Apr 16:10.1097/SLA.0000000000006299. doi: 10.1097/SLA.0000000000006299. Epub ahead of print. PMID: 38623754; PMCID: PMC11480254.
  4. Ekpruke CD, Alford R, Rousselle D, Babayev M, Sharma S, Parker E, Davis K, Hemmerich C, Rusch DB, Silveyra P. Sex-specific alterations in the gut and lung microbiome of allergen-induced mice. Front Allergy. 2024 Aug 15;5:1451846. doi: 10.3389/falgy.2024.1451846. PMID: 39210977; PMCID: PMC11358121.
  5. Ponnusamy L, Travanty NV, Watson DW, Seagle SW, Boyce RM, Reiskind MH. Microbiome of Invasive Tick Species Haemaphysalis Longicornis in North Carolina, USA. Insects. 2024 Feb 24;15(3):153. doi: 10.3390/insects15030153. PMID: 38535349; PMCID: PMC10970973.
  6. Gray SM, Moss AD, Herzog JW, Kashiwagi S, Liu B, Young JB, Sun S, Bhatt AP, Fodor AA, Balfour Sartor R. Mouse adaptation of human inflammatory bowel diseases microbiota enhances colonization efficiency and alters microbiome aggressiveness depending on the recipient colonic inflammatory environment. 2024 Aug 7;12(1):147. doi: 10.1186/s40168-024-01857-2. PMID: 39113097; PMCID: PMC11304999.
  7. DuMez-Kornegay RN, Baker LS, Morris AJ, DeLoach WLM, Dowen RH. Kombucha Tea-associated microbes remodel host metabolic pathways to suppress lipid accumulation. PLoS Genet. 2024 Mar 28;20(3):e1011003. doi: 10.1371/journal.pgen.1011003. PMID: 38547054; PMCID: PMC10977768.
  8. Bhatt AP, Arnold JW, Awoniyi M, Sun S, Santiago VF, Quintela PH, Walsh K, Ngobeni R, Hansen B, Gulati A, Carroll IM, Azcarate-Peril MA, Fodor AA, Swann J, Bartelt LA. Giardia Antagonizes Beneficial Functions of Indigenous and Therapeutic Intestinal Bacteria during Malnutrition. bioRxiv [Preprint]. 2024 Jan 23:2024.01.22.575921. doi: 10.1101/2024.01.22.575921. PMID: 38328247; PMCID: PMC10849499.
  9. Brinson AK. Every Baby Is Gonna Baby: Infant Sleep Development in the United States. PhD diss., The University of North Carolina at Chapel Hill, 2024.
  10. Wylie AM. Examining the Effects of Prenatal Urinary Lead on Child Outcomes in Context. PhD diss., The University of North Carolina at Chapel Hill, 2024.
  11. Yuan Y, Li H, Sreeram K, Malankhanova T, Boddu R, Strader S, Chang A, Bryant N, Yacoubian TA, Standaert DG, Erb M, Moore DJ, Sanders LH, Lutz MW, Velmeshev D, West AB. Single molecule array measures of LRRK2 kinase activity in serum link Parkinson’s disease severity to peripheral inflammation. Mol Neurodegener. 2024 Jun 11;19(1):47. doi: 10.1186/s13024-024-00738-4. PMID: 38862989; PMCID: PMC11167795.
  12. Hu Y, Aljumaah MR, Azcarate-Peril MA. Galacto-Oligosaccharides and the Elderly Gut: Implications for Immune Restoration and Health. Adv Nutr. 2024 Aug;15(8):100263. doi: 10.1016/j.advnut.2024.100263. Epub 2024 Jun 17. PMID: 38897384; PMCID: PMC11292246.
  13. Dorsey AF, Roach J, Burten RB, Azcarate-Peril MA, Thompson AL. Intestinal microbiota composition and efficacy of iron supplementation in Peruvian children. Am J Hum Biol. 2024 Aug;36(8):e24058. doi: 10.1002/ajhb.24058. Epub 2024 Feb 29. PMID: 38420749.
  14. Wood J, Aryal N, Subedi K. Wastewater Treatment Using Poplar Plants:Processes. Water2023, 15, 3812. https://doi.org/10.3390/w15213812.
  15. Wang M, Rousseau B, Qiu K, Huang G, Zhang Y, Su H, Le Bihan-Benjamin C, Khati I, Artz O, Foote MB, Cheng YY, Lee KH, Miao MZ, Sun Y, Bousquet PJ, Hilmi M, Dumas E, Hamy AS, Reyal F, Lin L, Armistead PM, Song W, Vargason A, Arthur JC, Liu Y, Guo J, Zhou X, Nguyen J, He Y, Ting JP, Anselmo AC, Huang L. Killing tumor-associated bacteria with a liposomal antibiotic generates neoantigens that induce anti-tumor immune responses. Nat Biotechnol. 2024 Aug;42(8):1263-1274. doi: 10.1038/s41587-023-01957-8. Epub 2023 Sep 25. PMID: 37749267.
  16. Dubey H, Roychoudhury R, Alex A, Best C, Liu S, White A, Carlson A, Azcarate-Peril MA, Mansfield LS, Knickmeyer R. Effect of Human Infant Gut Microbiota on Mouse Behavior, Dendritic Complexity, and Myelination. bioRxiv [Preprint]. 2023 Oct 27:2023.10.24.563309. doi: 10.1101/2023.10.24.563309. PMID: 37961091; PMCID: PMC10634763.
  1. Gookin JL, Hartley AN, Aicher KM, Mathews KG, Cullen R, Cullen JM, Callahan BJ, Stowe DM, Seiler GS, Jacob ME, Arnold JW, Azcarate-Peril MA, Stauffer SH. Gallbladder microbiota in healthy dogs and dogs with mucocele formation. PLoS One. 2023 Feb 10;18(2):e0281432. doi:10.1371/journal.pone.0281432. PMID: 36763596; PMCID: PMC9916591.
  2. Rogério F, Baroncelli R, Cuevas-Fernández FB, Becerra S, Crouch J, Bettiol W, Azcarate-Peril MA, Malapi-Wight M, Ortega V, Betran J, Tenuta A, Dambolena JS, Esker PD, Revilla P, Jackson-Ziems TA, Hiltbrunner J, Munkvold G, Buhiniček I, Vicente-Villardón JL, Sukno SA, Thon MR. Population Genomics Provide Insights into the Global Genetic Structure of Colletotrichum graminicola, the Causal Agent of Maize Anthracnose. mBio. 2023 Feb 28;14(1):e0287822. doi: 10.1128/mbio.02878-22. Epub 2022 Dec 19. PMID: 36533926; PMCID: PMC9973043.
  3. Liu M, Matuszek G, Azcarate-Peril MA, Loeser RF, Shea MK. An Exploratory Case-Control Study on the Associations of Bacterially-Derived Vitamin K Forms with the Intestinal Microbiome and Obesity-Related Osteoarthritis. Curr Dev Nutr. 2023 Feb 19;7(3):100049. doi: 10.1016/j.cdnut.2023.100049. PMID: 37181928; PMCID: PMC10111584.
  4. Long ES, Penalver Bernabe B, Xia K, Azcarate-Peril MA, Carroll IM, Rackers HS, Grewen KM, Meltzer-Brody S, Kimmel MC. The microbiota-gut-brain axis and perceived stress in the perinatal period. Arch Womens Ment Health. 2023 Apr;26(2):227-234. doi: 10.1007/s00737-023-01300-9. Epub 2023 Mar 10. PMID: 36897389; PMCID: PMC10063483.
  5. Cho H, Ren Z, Divaris K, Roach J, Lin BM, Liu C, Azcarate-Peril MA, Simancas-Pallares MA, Shrestha P, Orlenko A, Ginnis J, North KE, Zandona AGF, Ribeiro AA, Wu D, Koo H. Selenomonas sputigena acts as a pathobiont mediating spatial structure and biofilm virulence in early childhood caries. Nat Commun. 2023 May 22;14(1):2919. doi: 10.1038/s41467-023-38346-3. PMID: 37217495; PMCID: PMC10202936.
  6. Styles JN, Egorov AI, Griffin SM, Klein J, Scott JW, Sams EA, Hudgens E, Mugford C, Stewart JR, Lu K, Jaspers I, Keely SP, Brinkman NE, Arnold JW, Wade TJ. Greener residential environment is associated with increased bacterial diversity in outdoor ambient air. Sci Total Environ. 2023 Jul 1;880:163266. doi: 10.1016/j.scitotenv.2023.163266. Epub 2023 Apr 5. PMID: 37028654.
  7. Ji M, Xu X, Xu Q, Hsiao YC, Martin C, Ukraintseva S, Popov V, Arbeev KG, Randall TA, Wu X, Garcia-Peterson LM, Liu J, Xu X, Azcarate-Peril MA, Wan Y, Yashin AI, Anantharaman K, Lu K, Li JL, Shats I, Li X. Methionine restriction-induced sulfur deficiency impairs antitumour immunity partially through gut microbiota. Nat Metab. 2023 Aug 3. doi: 10.1038/s42255-023-00854-3.Epub ahead of print. PMID: 37537369.
  8. Wahl A, Yao W, Liao B, Chateau M, Richardson C, Ling L, Franks A, Senthil K, Doyon G, Li F, Frost J, Whitehurst CB, Pagano JS, Fletcher CA, Azcarate-Peril MA, Hudgens MG, Rogala AR, Tucker JD, McGowan I, Sartor RB, Garcia JV. A germ-free humanized mouse model shows the contribution of resident microbiota to human-specific pathogen infection. Nat Biotechnol. 2023 Aug 10. doi: 10.1038/s41587-023-01906-5. Epub ahead of print. PMID: 37563299.
  9. Alford RR. Sex influences on the gut microbiome in a mouse model of an environmental allergen challenge, 2023. [Bloomington, Ind.]: Indiana University.
  10. Burnash SG. The Gut Microbiome in CAR-T Patients (2023) North Carolina State University.
  11. Chen K, Travanty NV, Garshong R, Crossley D, Wasserberg G, Apperson CS, Roe RM, Ponnusamy L. Detection of Orientia spp. Bacteria in Field-Collected Free-Living Eutrombicula Chigger Mites, United States. Emerg Infect Dis. 2023 Aug;29(8):1676-1679. doi: 10.3201/eid2908.230528. PMID: 37486323; PMCID:PMC10370866.
  12. Nazir M. Clostridium Beijerinckii Stress Response to Oxygen: Role of an Active Heterologous Catalase on Solvent Generation, 2023. North Carolina State University.
  13. Shigdel R, Johannessen A, Lin H, Peddada S, Gómez Real F, Ringel-Kulka T, Svanes C, Bertelsen RJ. Oral bacterial composition associated with lung function and lung inflammation in a community-based Norwegian population. Respir Res. 2023 Jul 12;24(1):183. doi: 10.1186/s12931-023-02491-6. PMID: 37438766; PMCID: PMC10337198.
  14. Novoa RE, Bailey M, Kumar S, Leone C, Den Bakker HC, Thippareddi H, Singh M. Characterizing the gut microbiome of broilers raised under conventional and no antibiotics ever practices. Poult Sci. 2023 Aug;102(8):102832. doi: 10.1016/j.psj.2023.102832. Epub 2023 Jun 3. PMID: 37343348; PMCID: PMC10404755.
  15. Babikow E, Ghaltakhchyan N, Livingston T, Qu Y, Liu C, Hoxie A, Sulkowski T, Bocklage C, Marsh A, Phillips ST, Mitchell KB, Ribeiro AA, Jackson TH, Roach J, Wu D, Divaris K, Jacox LA. Longitudinal Microbiome Changes in Supragingival Biofilm Transcriptomes Induced by Orthodontics. JDR Clin Trans Res. 2023 Oct;23800844231199393. doi: 10.1177/23800844231199393. Epub ahead of print. PMID: 37876206.
  16. Eckhoff AM, Fletcher AA, Kelly MS, Dohlman A, McIntyre CA, Shen X, Iyer MK, Nussbaum DP, Allen PJ. Comprehensive Assessment of the Intrinsic Pancreatic Microbiome. BioRxiv 2023 Aug;553074; doi: https://doi.org/10.1101/2023.08.12.553074.
  17. Mathiesen KU. LPS quantification of oral samples from the RHINESSA study population. The University of Bergen, 2023.
  18. Khomich M, Lin H, Malinovschi, A, Brix S, Cestelli L, Peddada S, Johannessen A, Eriksen C, Gomez Real F, Svanes C, Jacobsen Bertelsen R. Association between lipid-A-producing oral bacteria of different potency and fractional exhaled nitric oxide in a Norwegian population-based adult cohort.Transl. Med. 2023 May; 21(1): 354: https://doi.org/10.1186/s12967-023-04199-z.
  19. Haddad LB, Tang JH, Davis NL, Kourtis AP, Chinula L, Msika A, Tegha G, Hosseinipour MC, Nelson JA, Hobbs MM, Gajer P. Influence of Hormonal Contraceptive Use and HIV on Cervicovaginal Cytokines and Microbiota in Malawi. Msphere. 2023 Jan 9:e00585-22. doi: 1128/msphere.00585-22. PMID: 36622252.
  1. Aljumaah MR, Bhatia U, Roach J, Gunstad J, Azcarate Peril MA. The gut microbiome, mild cognitive impairment, and probiotics: A randomized clinical trial in middle-aged and older adults. Clin Nutr. 2022 Nov;41(11):2565-2576. doi: 10.1016/j.clnu.2022.09.012. Epub 2022 Sep 28. PMID: 36228569.
  2. Anthonj C, Setty KE, Ferrero G, A Yaya AM, Mingoti Poague KIH, Marsh AJ, Augustijn EW. Do health risk perceptions motivate water – and health-related behaviour? A systematic literature review. Sci Total Environ. 2022 May 1;819:152902. doi: 10.1016/j.scitotenv.2021.152902. Epub 2022 Jan 6. PMID: 34998758.
  3. Marsh AJ, Azcarate Peril MA, Aljumaah MR, Neville J, Perrin MT, Dean LL, Wheeler MD, Hines IN, Pawlak R. Fatty acid profile driven by maternal diet is associated with the composition of human milk microbiota. Microbiol. 2022. Vol 1. doi.org/10.3389/frmbi.2022.1041752.
  4. Arbeeva L, Azcarate-Peril MA, Cui Y, Nelson AE, Loeser RF. Association of plasma microbial composition with a leaky gut in obesity-related osteoarthritis: An exploratory study. Osteoarthr Cartil Open. 2022 Oct 29;4(4):100317. doi: 10.1016/j.ocarto.2022.100317. PMID: 36474790; PMCID: PMC9718202.
  5. Camp KK. Impact Of Surgical And Dietary Weight Loss Interventions On The Obesity—gut Microbiome—breast Cancer Links. doi.org/10.17615/cgm5-c746.
  6. Zasloff R. Prebiotic Modulation of Intestinal Permeability. 2022. doi.org/10.17615/gqch-hs41.
  7. Simpson JB, Sekela JJ, Graboski AL, Borlandelli VB, Bivins MM, Barker NK, Sorgen AA, Mordant AL, Johnson RL, Bhatt AP, Fodor AA. Metagenomics combined with activity-based proteomics point to gut bacterial enzymes that reactivate mycophenolate. Gut Microbes. 2022 Dec 31;14(1):2107289. doi: 1080/19490976.2022.2107289. PMID: 35953888.
  8. Rushing BR, McRitchie S, Arbeeva L, Nelson AE, Azcarate-Peril MA, Li YY, Qian Y, Pathmasiri W, Sumner SCJ, Loeser RF. Fecal metabolomics reveals products of dysregulated proteolysis and altered microbial metabolism in obesity-related osteoarthritis. Cartil. 2022 Jan;30(1):81-91. doi: 10.1016/j.joca.2021.10.006. Epub 2021 Oct 28. PMID: 34718137; PMCID: PMC8712415.
  9. Martinez SS, Stebliankin V, Hernandez J, Martin H, Tamargo J, Rodriguez JB, Teeman C, Johnson A, Seminario L, Campa A, Narasimhan G, Baum MK. Multiomic analysis reveals microbiome-related relationships between cocaine use and metabolites. AIDS. 2022 Dec 1;36(15):2089-2099. doi: 10.1097/QAD.0000000000003363. Epub 2022 Aug 18. PMID: 36382433; PMCID: PMC9673179.
  10. Ribeiro AA, Jiao Y, Girnary M, Alves T, Chen L, Farrell A, Wu D, Teles F, Inohara N, Swanson KV, Marchesan JT. Oral biofilm dysbiosis during experimental periodontitis. Mol. Oral Microbiol. 2022 Dec;37(6):256-65. doi: 1111/omi.12389. PMID: 36189827.
  11. Vemuri R, Ruggiero A, Whitfield JM, Dugan GO, Cline JM, Block MR, Guo H, Kavanagh K. Hypertension promotes microbial translocation and dysbiotic shifts in the fecal microbiome of nonhuman primates. J. Physiol. Heart Circ. 2022 Mar 1;322(3):H474-85. doi: 10.1152/ajpheart.00530.2021. PMID: 35148233.
  12. Beasley DE, Monsur M, Hu J, Dunn RR, Madden AA. The bacterial community of childcare centers: potential implications for microbial dispersal and child exposure. Environ microbiome. 2022 Dec;17(1):1-3.
  13. Fouad AF, Diogenes AR, Torabinejad M, Hargreaves KM. Microbiome changes during regenerative endodontic treatment using different methods of disinfection. J of Endod. 2022 Oct 1;48(10):1273-84. doi: 1016/j.joen.2022.07.004. PMID: 36030971.
  14. Loeser RF, Arbeeva L, Kelley K, Fodor AA, Sun S, Ulici V, Longobardi L, Cui Y, Stewart DA, Sumner SJ, Azcarate‐Peril MA. Association of Increased Serum Lipopolysaccharide, But Not Microbial Dysbiosis, With Obesity‐Related Osteoarthritis. Arthritis Rheumatol. 2022 Feb;74(2):227-36. doi: 1002/art.41955. PMID: 34423918.
  15. Travanty NV, Vargo EL, Apperson CS, Ponnusamy L. Colonization by the red imported fire ant, Solenopsis invicta, modifies soil bacterial communities. ecol. 2022 Jul;84(1):240-56. doi: 10.1007/s00248-021-01826-4. PMID: 34370055.
  16. Bertelsen RJ, Barrionuevo AM, Shigdel R, Lie SA, Lin H, Real FG, Ringel‐Kulka T, Åstrøm AN, Svanes C. Association of oral bacteria with oral hygiene habits and self‐reported gingival bleeding. J Clin periodontal.2022 Aug; 49(8): 768–781. doi:1111/jcpe.13644. PMID 35569028.
  17. Ramos-García ÁA, Walecka-Hutchison C, Freedman DL. Effect of biostimulation and bioaugmentation on biodegradation of high concentrations of 1, 4-dioxane. 2022 Apr;33(2):157-68. doi: 10.1007/s10532-022-09971-4. PMID: 35102492.
  18. Cho H, Ren Z, Divaris K, Roach J, Lin B, Lin C, Azcarate-Peril A, Simancas-Pallares M, Shrestha P, Orlenko A, Ginnis J. Pathobiont-mediated spatial structuring enhances biofilm virulence in childhood oral disease. doi: 10.21203/rs.3.rs-1748651/v1.
  19. AKimmel M, Jin W, Xia K, Lun K, Azcarate-Peril A, Plantinga A, Wu M, Ataei S, Rackers H, Carroll I, Meltzer-Brody S. Metabolite trajectories across the perinatal period and mental health: A preliminary study of tryptophan-related metabolites, bile acids and microbial composition. Behav. Brain Res. 2022 Feb 10;418:113635. doi: 1016/j.bbr.2021.113635. PMID: 34755640.
  20. Kelly SH, Votaw NL, Cossette BJ, Wu Y, Shetty S, Shores LS, Issah LA, Collier JH. A sublingual nanofiber vaccine to prevent urinary tract infections. Adv. 2022 Nov 23;8(47):eabq4120 doi: 10.1126/sciadv.abq4120. PMID: 36417519.
  21. Rogério F, Baroncelli R, Cuevas-Fernández FB, Becerra S, Crouch J, Bettiol W, Azcárate-Peril MA, Malapi-Wight M, Ortega V , Betran J , Tenuta A, Dambolena JS, Esker PD, Revilla P, Jackson-Ziems TA, Hiltbrunner J, Munkvold G, Buhinicek I, Vicente-Villardon JL, Sukno SA, Thon MR. Migration and genetic recombination shape the global population structure of Colletotrichum graminicola, the causal agent of maize anthracnose. Área temática: Interacción Planta Patógeno. 2022.
  22. Rogério F, Baroncelli R, Cuevas-Fernández FB, Becerra S, Crouch J, Bettiol W, Azcárate-Peril MA, Malapi-Wight M, Ortega V , Betran J , Tenuta A, Dambolena JS, Esker PD, Revilla P, Jackson-Ziems TA, Hiltbrunner J, Munkvold G, Buhinicek I, Vicente-Villardon JL, Sukno SA, Thon MR. Population genomics provide insights into the global genetic structure of Colletotrichum graminicola, the causal agent of maize anthracnose. Population genetics. 2022. doi.org/10.1128/mbio.02878-22.
  23. Chen K, Ponnusamy L, Mouhamadou CS, Fodjo BK, Sadia GC, Affoue FP, Deguenon JM, Roe RM. Internal and external microbiota of home-caught Anopheles coluzzii (Diptera: Culicidae) from Côte d’Ivoire, Africa: Mosquitoes are filthy. Plos one. 2022 Dec 15;17(12):e0278912. doi: 1371/journal.pone.0278912. PMID: 36520830.
  24. Fan L, Zhu X, Sun S, Yu C, Huang X, Ness R, Dugan LL, Shu L, Seidner DL, Murff HJ, Fodor AA, Azcarate-Peril MA, Shrubsole MJ, Dai Q. Ca:Mg ratio, medium-chain fatty acids, and the gut microbiome. Clin Nutr. 2022 Nov;41(11):2490-2499. doi: 10.1016/j.clnu.2022.08.031. Epub 2022 Sep 12. PMID: 36223712
  25. Brown SA, Balmonte JP, Hoarfrost A, Ghobrial S, Arnosti C. Depth-related patterns in microbial community responses to complex organic matter in the western North Atlantic Ocean. BG. 2022 Dec 14;19(24):5617-31. doi.org/10.5194/bg-19-5617.
  26. Wood J. Plant and Rhizosphere Processes That Prevent Groundwater Contamination from Metals and Nitrates(Doctoral dissertation, North Carolina Agricultural and Technical State University). 2022
  27. Lovett A, Seña AC, Macintyre AN, Sempowski GD, Duncan JA, Waltmann A. Cervicovaginal microbiota predicts Neisseria gonorrhoeae clinical presentation. Microbiol. 2022 Feb 10;12:4171. doi: 10.3389/fmicb.2021.790531. PMID: 35222300.
  28. Sanborn V, Aljumaah M, Azcarate-Peril MA, Gunstad J. Examining the cognitive benefits of probiotic supplementation in physically active older adults: A randomized clinical trial. Appl Physiol Nutr Metab. 2022 May 26;47(8):871-82. doi: 1139/apnm-2021-0557. PMID: 35617704.
  1. Canipe LG 3rd, Sioda M, Cheatham CL. Diversity of the gut-microbiome related to cognitive behavioral outcomes in healthy older adults. Arch Gerontol Geriatr. 2021 Sep-Oct;96:104464. doi: 10.1016/j.archger.2021.104464. Epub 2021 Jun 16. PMID: 34174489.
  2. Kimmel M, Jin W, Xia K, Lun K, Azcarate-Peril A, Plantinga A, Wu M, Ataei S,Rackers H, Carroll I, Meltzer-Brody S, Fransson E, Knickmeyer R. Metabolite trajectories across the perinatal period and mental health: A preliminary study of tryptophan-related metabolites, bile acids and microbial composition. Behav Brain Res. 2021 Oct 29;418:113635. doi: 10.1016/j.bbr.2021.113635. Epub ahead of print. PMID: 34755640.
  3. Idomeh JE, Shittu OB, Oyedepo JA, Bada BS, Balogun SA, Idomeh FA, Ezenweani RS. Petroleum Hydrocarbon Impacted Aquatic Ecosystem Reveals Methylotenera as the Dominant Genera in the Niger Delta Region of Nigeria, Geomicrobiology Journal, 38:10, 879-894, DOI: 10.1080/01490451.2021.1973614
  4. Rushing BR, McRitchie S, Arbeeva L, Nelson AE, Azcarate-Peril MA, Li YY, Qian Y, Pathmasiri W, Sumner SCJ, Loeser RF. Fecal metabolomics reveals products of dysregulated proteolysis and altered microbial metabolism in obesity-related osteoarthritis. Osteoarthritis Cartilage. 2021 Oct 28:S1063-4584(21)00937-7. doi: 10.1016/j.joca.2021.10.006. Epub ahead of print. PMID: 34718137.
  5. Arnold JW, Roach J, Fabela S, Moorfield E, Ding S, Blue E, Dagher S, Magness S, Tamayo R, Bruno-Barcena JM, Azcarate-Peril MA. The pleiotropic effects of prebiotic galacto-oligosaccharides on the aging gut. Microbiome. 2021 Jan 28;9(1):31. doi: 10.1186/s40168-020-00980-0. Erratum in: Microbiome. 2021 Feb 26;9(1):56. PMID: 33509277; PMCID: PMC7845053.
  6. Loeser RF, Arbeeva L, Kelley K, Fodor AA, Sun S, Ulici V, Longobardi L, Cui Y, Stewart DA, Sumner SJ, Azcarate-Peril MA, Sartor RB, Carroll IM, Renner JB,Jordan JM, Nelson AE. Association of Increased Serum Lipopolysaccharide but not Microbial Dysbiosis with Obesity-related Osteoarthritis. Arthritis Rheumatol. 2021 Aug 23. doi: 10.1002/art.41955. Epub ahead of print. PMID: 34423918.
  7. Azcarate-Peril MA, Roach J, Marsh A, Chey WD, Sandborn WJ, Ritter AJ, Savaiano DA, Klaenhammer TR. A double-blind, 377-subject randomized study identifies Ruminococcus, Coprococcus, Christensenella, and Collinsella as long-term potential key players in the modulation of the gut microbiome of lactose intolerant individuals by galacto-oligosaccharides.Gut Microbes. 2021 Jan-Dec;13(1):1957536. doi: 10.1080/19490976.2021.1957536.PMID: 34365905; PMCID: PMC8354614.
  8. Guadamuro L, Azcarate-Peril MA, Tojo R, Mayo B, Delgado S. Impact of Dietary Isoflavone Supplementation on the Fecal Microbiota and Its Metabolites in Postmenopausal Women. Int J Environ Res Public Health. 2021 Jul 27;18(15):7939. doi: 10.3390/ijerph18157939. PMID: 34360231; PMCID: PMC8345437.
  9. Sun S, Zhu X, Huang X, Murff HJ, Ness RM, Seidner DL, Sorgen AA, Blakley IC,Yu C, Dai Q, Azcarate-Peril MA, Shrubsole MJ, Fodor AA. On the robustness of inference of association with the gut microbiota in stool, rectal swab and mucosal tissue samples. Sci Rep. 2021 Jul 21;11(1):14828. doi: 10.1038/s41598-021-94205-5. PMID: 34290321; PMCID: PMC8295290.
  10. da Costa Rosa T, de Almeida Neves A, Azcarate-Peril MA, Divaris K, Wu D, Cho H, Moss K, Paster BJ, Chen T, B Freitas-Fernandes L, Fidalgo TKS, Tadeu Lopes R,Valente AP, R Arnold R, de Aguiar Ribeiro A. The bacterial microbiome and metabolome in caries progression and arrest. J Oral Microbiol. 2021 Jun 16;13(1):1886748. doi: 10.1080/20002297.2021.1886748. PMID: 34188775; PMCID: PMC8211139.
  11. Emami-Khoyi A, Agnew,TW, Adair MG, Murphy EC, Benmazouz I, Monsanto DM, Parbhu SP, Main DC, Le Roux R, Golla TP, Schnelle C, Alizadeh H, Csányi S, Heltai M, Jansen van Vuuren B, Paterson AM, Teske PR, Ross, JG. A new non-invasive method for collecting DNA from small mammals in the field, and its application in simultaneous vector and disease monitoring in brushtail possums. Frontiers in Environmental Science: 318.
  12. Travanty NV, Vargo EL, Apperson CS, Ponnusamy L. Colonization by the Red Imported Fire Ant, Solenopsis invicta, Modifies Soil Bacterial Communities. Microb Ecol. 2021 Aug 9. doi: 10.1007/s00248-021-01826-4. Epub ahead of print. PMID: 34370055.
  13. Carlson AL, Xia K, Azcarate-Peril MA, Rosin SP, Fine JP, Mu W, Zopp JB, Kimmel MC, Styner MA, Thompson AL, Propper CB, Knickmeyer RC. Infant gut microbiome composition is associated with non-social fear behavior in a pilot study. Nat Commun. 2021 Jun 2;12(1):3294. doi: 10.1038/s41467-021-23281-y. PMID: 34078892; PMCID: PMC8172562.
  14. Xu L, Earl J, Bajorski P, Gonzalez E, Pichichero ME. Nasopharyngeal microbiome analyses in otitis-prone and otitis-free children. Int J Pediatr Otorhinolaryngol. 2021 Apr;143:110629. doi: 10.1016/j.ijporl.2021.110629. Epub 2021 Jan 21. PMID: 33516061.
  15. Jahnke JR, Roach J, Azcarate-Peril MA, Thompson AL. Maternal precarity and HPA axis functioning shape infant gut microbiota and HPA axis development in humans. PLoS One. 2021 May 20;16(5):e0251782. doi: 10.1371/journal.pone.0251782. PMID: 34015045; PMCID: PMC8136730.
  16. Ponnusamy L, Sutton H, Mitchell RD 3rd, Sonenshine DE, Apperson CS, Roe RM. Tick Ecdysteroid Hormone, Global Microbiota/<i>Rickettsia</i> Signaling in the Ovary versus Carcass during Vitellogenesis in Part-Fed (Virgin) American Dog Ticks, <i>Dermacentor variabilis</i>. 2021 Jun 8;9(6):1242. doi: 10.3390/microorganisms9061242. PMID: 34201013; PMCID: PMC8228290.
  17. Arnold JW, Whittington HD, Dagher SF, Roach J, Azcarate-Peril MA, Bruno-Barcena JM. Safety and Modulatory Effects of Humanized Galacto-Oligosaccharides on the Gut Microbiome. Front Nutr. 2021 Apr 7;8:640100. doi:10.3389/fnut.2021.640100. PMID: 33898497; PMCID: PMC8058378.
  18. Vetreno RP, Massey V, Crews FT. Long-lasting microbial dysbiosis and altered enteric neurotransmitters in adult rats following adolescent binge ethanol exposure. Addict Biol. 2021 Jan;26(1):e12869. doi: 10.1111/adb.12869. Epub 2019 Dec 27. PMID: 31880056; PMCID: PMC7319904.
  19. Deguenon JM, Dhammi A, Ponnusamy L, Travanty NV, Cave G, Lawrie R, Mott D, Reisig D, Kurtz R, Roe RM. Bacterial Microbiota of Field-Collected <i>Helicoverpa zea</i> (Lepidoptera: Noctuidae) from Transgenic Bt and Non-Bt Cotton. 2021 Apr 20;9(4):878. doi:
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  21. Rosin, Samuel, Xia, Kai, Azcarate-Peril, M Andrea, Carlson, Alexander L, Propper, Cathi B, Thompson, Amanda L, Grewen, Karen, Knickmeyer, Rebecca C. (2020) A Preliminary Study of Gut Microbiome Variation and HPA Axis Reactivity in Healthy Infants. Psyconeuroendocrinology. 2020 Nov 12;124:105046.
  22. Saccon TD, Nagpal R, Yadav H, Cavalcante MB, Nunes ADC, Schneider A, Gesing A, Hughes B, Yousefzadeh M, Tchkonia T, Kirkland JL, Niedernhofer LJ, Robbins PD, Masternak MM. Senolytic Combination of Dasatinib and Quercetin Alleviates Intestinal Senescence and Inflammation and Modulates the Gut Microbiome in Aged Mice. J Gerontol A Biol Sci Med Sci. 2021 Oct 13;76(11):1895-1905. doi: 10.1093/gerona/glab002. PMID: 33406219; PMCID: PMC8514064.
  23. Bierlein M, Hedgespeth BA, Azcarate-Peril MA, Stauffer SH, Gookin JL. Dysbiosis of fecal microbiota in cats with naturally occurring and experimentally induced Tritrichomonas foetus infection. PLoS One. 2021 Feb 19;16(2):e0246957. doi: 10.1371/journal.pone.0246957. PMID: 33606740; PMCID: PMC7894905
  1. Rosin, Samuel, Xia, Kai, Azcarate-Peril, M Andrea, Carlson, Alexander L, Propper, Cathi B, Thompson, Amanda L, Grewen, Karen, Knickmeyer, Rebecca C. (2020) A Preliminary Study of Gut Microbiome Variation and HPA Axis Reactivity in Healthy Infants. Psyconeuroendocrinology. 2020 Nov 12;124:105046.
  2. Emami-Khoyi, Arsalan, Benmazouz, Isma, Paterson, Adrian M, Ross, James G, Murphy, Elaine C, Bothwell, Jennifer, Alizadeh, Hossein, van Vuuren, Bettine Jansen, Teske, Peter R. (2020) Oral microbiome metabarcoding in two invasive small mammals from New Zealand. Diversity 2020, 12(7), 278
  3. Sasada, Ryan., Weinstein, Michael., Danko, David., Wolfe, Elaine., Tang, Shuiguan.,Jarvis, Karen., Grim, Christopher., Lagishetty, Venu., Jacobs, Jonathan., Arnold, Jason., Kemp, Ryan., Mason, Christopher. (2020) Progress towards standardizing metagenomics: Applying metagenomic reference material to develop reproducible microbial lysis methods with minimum bias. J Biomol Tech. 2020 Aug; 31(suppl): S30-S31.
  4. Trippe, Leslie H, Ribeiro, Apoena Aguiar, Azcarate-Peril, M Andrea, Preisser, John S, Wang, Rujin, Zandona, Andrea Ferreira (2020) Is Fluorescence Technology a Promising Tool for Detecting Infected Dentin in Deep Carious Lesions? Caries Res. 2020;54(3):205-217. doi:10.1159/000505643. Epub 2020 Jun 24.
  5. Dugyala, Supritha, Ptacek, Travis S, Simon, Jeremy M, Li, Yuhui, Fröhlich, Flavio.(2020) Putative modulation of the gut microbiome by probiotics enhances preference for novelty in a preliminary double-blind placebo-controlled study in ferrets. Animal Microbiome 2020;2:14. doi: 10.1186/s42523-020-00030-y. Epub 2020 May 5.
  6. Marsh, Alan J, Yaya, Al-Mounawara A, Ng, Sandy, Chandrashekhar, Kshipra, Roach, Jeff, Magness, Scott T, Azcarate-Peril, M Andrea. (2020) Lumen and mucosa-associated Lactobacillus rhamnosus from the intestinal tract of organ donors. Gut Microbiome, Volume 1, 2020, e4, Cambridge University Press.
  7. Divaris, Kimon, Slade, Gary D, Ferreira Zandona, Andrea G, Preisser, John S, Ginnis, Jeannie, Simancas-Pallares, Miguel A, Agler, Cary S, Shrestha, Poojan, Karhade, Deepti S, Ribeiro, Apoena de Aguiar. (2020) Cohort Profile: ZOE 2.0—A Community-Based Genetic Epidemiologic Study of Early Childhood Oral Health. International Journal of Environmental Research and Public Health. 2020 Nov 1;17(21):8056. doi:10.3390/ijerph17218056.
  8. Chey, William, Sandborn, William, Ritter, Andrew J, Foyt, Howard, Azcarate-Peril, M Andrea, Savaiano, Dennis A. (2020) Galacto-Oligosaccharide RP-G28 Improves Multiple Clinical Outcomes in Lactose-Intolerant Patients. 2020 Apr 10;12(4):1058. doi: 10.3390/nu12041058.
  9. Koutzoumis, Dimitri N, Vergara, Macarena, Pino, Jose, Buddendorff, Julia, Khoshbouei, Habibeh, Mandel, Ronald J, Torres, Gonzalo E. (2020) Alterations of the gut microbiota with antibiotics protects dopamine neuron loss and improve motor deficits in a pharmacological rodent model of Parkinson’s disease. Experimental Neurology 2020 Mar;325:113159. doi:10.1016/j.expneurol.2019.113159.Epub 2019 Dec 13.
  10. Desrosiers, Matthew R, Mittelman, Alexis, Weathers, Pamela J. (2020) Dried Leaf Artemisia Annua Improves Bioavailability of Artemisinin via Cytochrome P450 Inhibition and Enhances Artemisinin Efficacy Downstream. 2020 Feb 7;10(2):254. doi:10.3390/biom10020254.
  11. Guo, Hao, Chou, Wei-Chun, Lai, Yunjia, Liang, Kaixin, Tam, Jason W, Brickey, W June, Chen, Liang, Montgomery, Nathan D, Li, Xin, Bohannon, Lauren M., Sung, Anthony D., Chao, Nelson J., Peled, Jonathan U., Gomes, Antonio L.C., van den Brink, Marcel R.M., French, Matthew J., Macintyre, Andrew N., Sempowski, Gregory D., Tan, Xianming., Sartor, R. Balfour., Lu, Kun., Ting, Jenny P.Y. (2020) Multi-omics analyses of radiation survivors identify radioprotective microbes and metabolites. Science. 2020 Oct 30;370(6516):eaay9097. doi:10.1126/science.aay9097.
  12. Fix, Jonathan, Chandrashekhar, Kshipra, Perez, Johann, Bucardo, Filemon, Hudgens, Michael G, Yuan, Lijuan, Twitchell, Erica, Azcarate-Peril, Maria Andrea, Vilchez, Samuel, Becker-Dreps, Sylvia. (2020) Association between Gut Microbiome Composition and Rotavirus Vaccine Response among Nicaraguan Infants. American Journal of Tropical Medicine and Hygiene 2020 Jan;102(1):213-219.doi:10.4269/ajtmh.19-0355.
  13. Carter, Philip B, Norin, Elisabeth, Swennes, Alton G. (2020) Gnotobiotics and the Microbiome. The Laboratory Rat 2020:827-848.
  14. Marsh, Alan J, Chandrashekhar, Kshipra, Ng, Sandy, Roach, Jeff, Magness, Scott T, Azcarate-Peril, M Andrea. (2020) ,Genome Sequence of Citrobacter freundii AMC0703, Isolated from the Intestinal Lumen of an 11-Year-Old Organ Donor. Microbiology Resource Announcements 2020 Nov 12;9(46):e00994-20.doi:10.1128/MRA.00994-20.
  15. Marsh, Alan J, Chandrashekhar, Kshipra, Ng, Sandy, Roach, Jeff, Magness, Scott T, Azcarate-Peril, M Andrea. (2020) Genome Sequence of Eubacterium callanderi AMC0717, Isolated from the Colonic Mucosa of an 11-Year-Old Organ Donor. Microbiology Resource Announcements 2020 Nov 12;9(46):e00995-20.doi:10.1128/MRA.00995-20.
  16. Whittington, Hunter D, Singh, Mahatam, Ta, Chanh, Azcárate-Peril, M Andrea, Bruno-Bárcena, José M. (2020) Accelerated Biodegradation of the Agrochemical Ametoctradin by Soil-Derived Microbial Consortia. Frontiers in Microbiology 2020 Aug 25;11:1898.doi:10.3389/fmicb.2020.01898. eCollection 2020.
  17. Canipe, Larry Grant. (2020) Individualized Cognitive Decline and the Impact of Gut Microbiome Composition. doi:10.17615/befd-s096.
  18. Arnold, Jason W, Roach, Jeffery, Fabela, Salvador, Moorfield, Emily, Ding, Shengli, Blue, Eric, Dagher, Suzanne, Magness, Scott, Tamayo, Rita, Bruno-Barcena, Jose M., Azcarate-Peril, M Andrea. (2020) The pleiotropic effects of prebiotic galacto-oligosaccharides on the aging gut. doi:10.21203/rs.2.24333/v1.
  19. Muñana, Karen R, Jacob, Megan E, Callahan, Benjamin J. (2020) Evaluation of fecal Lactobacillus populations in dogs with idiopathic epilepsy. Animal Microbiome May 11(2)/19 (2020).
  20. Lee, Mi Kyeong, Wyss, Annah B, Carnes, Megan U, Richards, Marie, Parks, Christine G, Freeman, Laura E Beane, Thorne, Peter S, Umbach, David M, Azcarate-Peril, M Andrea, Peddada, Shyamal D. London, Stephanie J. (2020) House dust microbiota in relation to adult asthma and atopy in a US farming population. Journal of Allergy and Clinical Immunology. July 2020. doi:10.1016/j.jaci.2020.06.013.
  21. Pal, Anandita, Al-Shaer, Abrar E, Guesdon, William, Torres, Maria J, Armstrong, Michael, Quinn, Kevin, Davis, Traci, Reisdorph, Nichole, Neufer, P Darrell, Spangenburg, Espen E., Carroll, Ian., Bazinet, Richard P., Claria, Joan., Shaikh, Saame R. (2020) Eicosapentaenoic acid prevents obesity-induced metabolic impairments through the host-genetic dependent effects of resolvin E1. bioRxiv Jan 2020. doi:10.1096/jf.202000830R.
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  24. Chey W, Sandborn W, Ritter AJ, Foyt H, Azcarate-Peril MA, Savaiano DA. Galacto-Oligosaccharide RP-G28 Improves Multiple Clinical Outcomes in Lactose-Intolerant Patients. 2020 Apr 10;12(4):E1058. doi:10.3390/nu12041058. PMID: 32290344.
  25. Fix, J., Chandrashekhar, K., Perez, J., Bucardo, F., Hudgens, M. G., Yuan, L., Twitchell, E., Azcarate-Peril, M. A., Vilchez, S., and Becker-Dreps, S. (2020) Association between Gut Microbiome Composition and Rotavirus Vaccine Response among Nicaraguan Infants. The American Journal of Tropical Medicine and Hygiene 102(1) DOI: https://doi.org/10.4269/ajtmh.19-0355
  1. Lei, S., Twitchell, E. L., Ramesh, A. K., Bui, T., Majette, E., Tin, C. M., Avery, R., Arango-Argoty, G., Zhang, L., Becker-Dreps, S., Azcarate-Peril, M. A., Jiang, X., and Yuan, L. (2019) Enhanced GII.4 human norovirus infection in gnotobiotic pigs transplanted with a human gut microbiota. J. Gen. Virology Vol 100, Issue 11
  2. Travanty, N. V., Ponnusamy, L., Kakumanu, M., Nicholson, W., and Apperson C. S. (2019) Diversity and structure of the bacterial microbiome of the American dog tick, Dermacentor variabilis, is dominated by the endosymbiont Francisella . Symbiosis https://doi.org/10.1007/s13199-019-00642-2
  3. Divaris, K., Shungin, D., Rodriguez-Cortes, A., Basta, P. V., Roach, J., Cho, H., Wu, D., Ferreira Zandona, A. G., Ginnis, J., Ramamoorthy, S., Kinchen, J. M., Kwintkiewicz, J., Butz, N., Ribeiro, A. A., and Azcarate-Peril, M. A. (2019) The supragingival biofilm in early childhood caries: clinical and laboratory protocols and bioinformatics pipelines supporting oral metagenomics, metatranscriptomics and metabolomics studies of the oral microbiome. Methods in Molecular Biology, vol 1922. doi:10.1007/978-1-4939-9012-2_40.
  4. Guadamuro, Lucía, M Andrea Azcárate-Peril, Rafael Tojo, Baltasar Mayo, Susana Delgado 2019. “Use of High Throughput Amplicon Sequencing and Ethidium Monoazide Dye to Track Microbiota Changes in an Equol-Producing Menopausal Woman Receiving a Long-Term Isoflavones Treatment.” AIMS Microbiology 5 (1): 102–16. doi:10.3934/microbiol.2019.1.102.
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  8. Mason, M. R. (2019). Microbiological analysis of a humanized oral microbiome murine model (Order No. 13858579). Available from Dissertations & Theses @ University of North Carolina at Chapel Hill; ProQuest Dissertations & Theses Global. (2241701294). Retrieved from http://libproxy.lib.unc.edu/login?url=https://search.proquest.com/docview/2241701294?accountid=14244
  9. Gao, W., Salzwedel, A. P., Carlson, A. L., Xia, K., Azcarate-Peril, M. A., Styner, M. A., Thompson, A. L., Geng, X., Goldman, B. D., Gilmore, J. H. and R. C. Knickmeyer (2019) “Gut microbiome and brain functional connectivity in infants-a preliminary study focusing on the amygdala” Psychopharmacology  https://doi.org/10.1007/s00213-018-5161-8
  10. Pérez-Díaz, I. M., J. S. Hayes, E. Medina, A. M. Weber, N. Butz, A. N. Dickey, Z. Lu and M. A. Azcarate-Peril (2019). “Assessment of the non-lactic acid bacteria microbiota in fresh cucumbers and commercially fermented cucumber pickles brined with 6% NaCl.” Food Microbiology Volume 77, Pages 10-20
  1. Ponnusamy, L., Wilcox, A. C., Roe, R. M., Davidson, S. A., Linsuwanon, P., Schuster, A. L., Richards, A. L., Meshnick, S. R. and Apperson, C. S. (2018) Bacterial microbiome of the chigger mite Leptotrombidium imphalum varies by life stage and infection with the scrub typhus pathogen Orientia tsutsugamushi PloS One https://doi.org/10.1371/journal.pone.0208327.
  2. Ho, N. T., Li, F., Lee-Sarwar, K. A., Tun, H. M., Brown, B., Pannaraj, P. S., Bender, J. M., Azad, M. B., Thompson, A. L., Weiss, S. T. , Azcarate-Peril, M. A., Litonjua, A. A., Kozyrskyj, A. L., Jaspan, H. B., Aldrovandi, G. M. and Kuhn, L. (2018) Meta-analysis of effects of exclusive breastfeeding on infant gut microbiota across populations Nature Communications Volume 9, Article number: 4169
  3. Li, Y., Dugyala, S. R., Ptacek T. S., Gilmore, J. H. and F. Frohlich (2018) Maternal immune activation alters adult behavior, gut microbiome and juvenile brain oscillations in ferrets Sep-Oct; 5(5): ENEURO.0313-18.2018.
  4. Truax, A. D., Chen, L., Tam, J. W., Cheng, N., Guo, H., Koblansky, A. A., Chou, W., Wilson, J. E., Brickey, W. J., Petrucelli, A., Liu, R., Cooper, D. E., Koenigsknecht, M. J., Young, V. B., Netea, M. G., Stienstra, R., Sartor, R. B., Montgomery, S. A., Coleman, R. A. and J. P.-Y. Ting (2018) The inhibitory innate immune sensor NLRP12 maintains a threshold against obesity by regulating gut microbiota homeostasis Cell Host & Microbe Volume 24, Issue 3, 12 September 2018, Pages 364-378.e6.
  5. Xu, J. and H. S. Seifert (2018) Analysis of pilin antigenic variation in Neisseria meningitidis by next-generation sequencing J Bacteriol 200:e00465-18. https://doi.org/10.1128/JB .00465-18
  6. Ulici, V., K. L. Kelley, M. A. Azcarate-Peril, R. J. Cleveland, R. B. Sartor, T. A. Schwartz and R. F. Loeser (2018). “Osteoarthritis induced by destabilization of the medial meniscus is reduced in germ-free mice.” Osteoarthritis and carilage.  Volume 26, Issue 8, August 2018, Pages 1098-1109
  7. Thoemmes, M. S., F. A. Stewart, R. A. Hernandez-Aguilar, M. A. Bertone, D. A. Baltzegar, R. J. Borski, N. Cohen, K. P. Coyle, A. K. Piel and R. R. Dunn (2018). “Ecology of sleeping: the microbial and arthropod associates of chimpanzee beds.” Royal Society open science 5(5): 180382.
  8. Robinson, J., F. N. Anike, W. Willies and O. Isikhuemhen (2018). “Medicinal Mushrooms Supplements Alters Chicken Intestinal Microbiome.” Int J Med Mushrooms. 2018;20(7):685-693. doi: 10.1615/IntJMedMushrooms.2018026969.
  9. Ramos-Garcia, A. A., V. Shankar, C. A. Saski, T. Hsiang and D. L. Freedman (2018). “Draft Genome Sequence of the 1, 4-Dioxane-Degrading Bacterium Pseudonocardia dioxanivorans BERK-1.” Genome announcements 6(14): e00207-00218.
  10. Lee, M. K., M. U. Carnes, N. Butz, M. A. Azcarate-Peril, M. Richards, D. M. Umbach, P. S. Thorne, L. E. B. Freeman, S. D. Peddada and S. J. London (2018). “Exposures Related to House Dust Microbiota in a US Farming Population.” Environmental Health Perspectives (Online) 126(6).
  11. Koudelka, G. B., J. W. Arnold and D. Chakraborty (2018). “Evolution of STEC virulence: Insights from the antipredator activities of Shiga toxin producing E. coli.” International Journal of Medical Microbiology.
  12. Smid, M. C., N. M. Ricks, A. Panzer, A. N. Mccoy, M. A. Azcarate-Peril, T. O. Keku and K. A. Boggess (2018). “Maternal gut microbiome biodiversity in pregnancy.” American journal of perinatology 35(01): 024-030.
  13. Ho, N. T., F. Li, K. A. Lee-Sarwar, H. M. Tun, B. Brown, P. S. Pannaraj, J. M. Bender, M. B. Azad, A. L. Thompson and S. T. Weiss (2018). “Effects of exclusive breastfeeding on infant gut microbiota: a meta-analysis across studies and populations.” bioRxiv: 292755.
  14. Jones, R. B., X. Zhu, E. Moan, H. J. Murff, R. M. Ness, D. L. Seidner, S. Sun, C. Yu, Q. Dai, A. A. Fodor, M. A. Azcarate-Peril and M. J. Shrubsole (2018). “Inter-niche and inter-individual variation in gut microbial community assessment using stool, rectal swab, and mucosal samples.” Scientific reports 8(1): 4139.
  15. Carlson, A. L., K. Xia, M. A. Azcarate-Peril, B. D. Goldman, M. Ahn, M. A. Styner, A. L. Thompson, X. Geng, J. H. Gilmore and R. C. Knickmeyer (2018). “Infant gut microbiome associated with cognitive development.” Biological psychiatry 83(2): 148-159.
  16. Azcarate-Peril, M. A., N. Butz, M. B. Cadenas, M. Koci, A. Ballou, M. Mendoza, R. Ali and H. Hassan (2018). “An Attenuated Salmonella enterica Serovar Typhimurium Strain and Galacto-Oligosaccharides Accelerate Clearance of Salmonella Infections in Poultry through Modifications to the Gut Microbiome.” Applied and environmental microbiology 84(5): e02526-02517.
  17. Arnold, J. W., J. B. Sympson, J. Roach, J. Kwintkiewicz and M. A. Azcarate-Peril (2018). “Intra-species genomic and physiological variability impact stress resistance in strains of probiotic potential.” Frontiers in microbiology 9: 242.
  1. Houck, K. M. (2017). Early Life Effects of a Dual Burden Environment: Childhood Intestinal Health and Immune Function in Galápagos, Ecuador, The University of North Carolina at Chapel Hill.
  2. Zhai, Y. and I. Pérez‐Díaz (2017). “Fermentation Cover Brine Reformulation for Cucumber Processing with Low Salt to Reduce Bloater Defect.” Journal of food science 82(12): 2987-2996.
  3. Whitham, J. M., M. J. Schulte, B. G. Bobay, J. M. Bruno-Barcena, M. S. Chinn, M. C. Flickinger, J. J. Pawlak and A. M. Grunden (2017). “Characterization of Clostridium ljungdahlii OTA1: a non-autotrophic hyper ethanol-producing strain.” Applied microbiology and biotechnology 101(4): 1615-1630.
  4. Westmoreland, L. S., J. N. Niemuth, H. S. Gracz and M. K. Stoskopf (2017). “Altered acrylic acid concentrations in hard and soft corals exposed to deteriorating water conditions.” FACETS.
  5. Walker, M. Y., S. Pratap, J. H. Southerland, C. Farmer-Dixon, L. Kesavalu and P. Gangula (2017). “Role of oral and gut microbiome in nitric oxide mediated colon motility.” Nitric Oxide.
  6. Stepper, P., G. Kungulovski, R. Z. Jurkowska, T. Chandra, F. Krueger, R. Reinhardt, W. Reik, A. Jeltsch and T. P. Jurkowski (2017). “Efficient targeted DNA methylation with chimeric dCas9–Dnmt3a–Dnmt3L methyltransferase.” Nucleic acids research 45(4): 1703-1713.
  7. Sanz‐Martin, I., J. Doolittle‐Hall, R. Teles, M. Patel, G. Belibasakis, C. Hämmerle, R. Jung and F. Teles (2017). “Exploring the microbiome of healthy and diseased peri‐implant sites using Illumina Sequencing.” Journal of Clinical Periodontology.
  8. Sandoval-Espinola, W., M. Chinn, M. Thon and J. Bruno-Bárcena (2017). “Evidence of mixotrophic carbon-capture by n-butanol-producer Clostridium beijerinckii.” Scientific reports 7(1): 12759.
  9. Romano-Keeler, J., M. A. Azcarate-Peril, J.-H. Weitkamp, J. C. Slaughter, W. H. McDonald, S. Meng, M. S. Latuga and J. L. Wynn (2017). “Oral colostrum priming shortens hospitalization without changing the immunomicrobial milieu.” Journal of Perinatology 37(1): 36-41.
  10. Ribeiro, A. A., M. A. Azcarate-Peril, M. B. Cadenas, N. Butz, B. J. Paster, T. Chen, E. Bair and R. R. Arnold (2017). “The oral bacterial microbiome of occlusal surfaces in children and its association with diet and caries.” PloS one 12(7): e0180621.
  11. Pérez-Díaz, I., J. Hayes, E. Medina, K. Anekella, K. Daughtry, S. Dieck, M. Levi, R. Price, N. Butz and Z. Lu (2017). “Reassessment of the succession of lactic acid bacteria in commercial cucumber fermentations and physiological and genomic features associated with their dominance.” Food microbiology 63: 217-227.
  12. Manderino, L., I. Carroll, M. A. Azcarate-Peril, A. Rochette, L. Heinberg, C. Peat, K. Steffen, J. Mitchell and J. Gunstad (2017). “Preliminary Evidence for an Association Between the Composition of the Gut Microbiome and Cognitive Function in Neurologically Healthy Older Adults.” Journal of the International Neuropsychological Society 23(8): 700-705.
  13. Hughes, R.-A., R. A. Ali, M. A. Mendoza, H. M. Hassan and M. D. Koci (2017). “impact of Dietary galacto-Oligosaccharide (gOs) on chicken’s gut Microbiota, Mucosal gene expression, and Salmonella colonization.” Frontiers in veterinary science 4.
  14. Gray, J., K. Oehrle, G. Worthen, T. Alenghat, J. Whitsett and H. Deshmukh (2017). “Intestinal commensal bacteria mediate lung mucosal immunity and promote resistance of newborn mice to infection.” Science translational medicine 9(376): eaaf9412.
  15. Chen, L., J. E. Wilson, M. J. Koenigsknecht, W.-C. Chou, S. A. Montgomery, A. D. Truax, W. J. Brickey, C. D. Packey, N. Maharshak and G. K. Matsushima (2017). “The intracellular innate immune sensor NLRP12 attenuates colon inflammation by maintaining colonic microbial diversity and promoting protective commensal bacterial growth.” Nature immunology 18(5): 541.
  16. Bartelt, L. A., D. T. Bolick, J. Mayneris-Perxachs, G. L. Kolling, G. L. Medlock, E. I. Zaenker, J. Donowitz, R. V. Thomas-Beckett, A. Rogala and I. M. Carroll (2017). “Cross-modulation of pathogen-specific pathways enhances malnutrition during enteric co-infection with Giardia lamblia and enteroaggregative Escherichia coli.” PLoS pathogens 13(7): e1006471.
  17. Azcarate-Peril, M. A., A. J. Ritter, D. Savaiano, A. Monteagudo-Mera, C. Anderson, S. T. Magness and T. R. Klaenhammer (2017). “Impact of short-chain galactooligosaccharides on the gut microbiome of lactose-intolerant individuals.” Proceedings of the National Academy of Sciences: 201606722.
  18. Arnold, J. W., A. Monteagudo-Mera, E. Altermann, M. B. Cadenas, A. L. Thompson and M. A. Azcarate-Peril (2017). “Genome Sequences of Potential Probiotic Lactobacillus rhamnosus Isolates from Human Infants.” Genome announcements 5(14): e00107-00117.
  19. Anderson, J. R., I. Carroll, M. A. Azcarate-Peril, A. D. Rochette, L. J. Heinberg, C. Peat, K. Steffen, L. M. Manderino, J. Mitchell and J. Gunstad (2017). “A preliminary examination of gut microbiota, sleep, and cognitive flexibility in healthy older adults.” Sleep Medicine 38: 104-107.
  20. Allali, I., J. W. Arnold, J. Roach, M. B. Cadenas, N. Butz, H. M. Hassan, M. Koci, A. Ballou, M. Mendoza and R. Ali (2017). “A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome.” BMC microbiology 17(1): 194.
  1. Yang, T., L. M. Nigro, T. Gutierrez, S. B. Joye, R. Highsmith and A. Teske (2016). “Pulsed blooms and persistent oil-degrading bacterial populations in the water column during and after the Deepwater Horizon blowout.” Deep Sea Research Part II: Topical Studies in Oceanography 129: 282-291.
  2. Vanucci, S., F. Guidi, R. Pistocchi and R. A. Long (2016). “Phylogenetic structure of bacterial assemblages co-occurring with Ostreopsis cf. ovata bloom.” Harmful algae 55: 259-271.
  3. Twitchell, E. L., C. Tin, K. Wen, H. Zhang, S. Becker-Dreps, M. A. Azcarate-Peril, S. Vilchez, G. Li, A. Ramesh and M. Weiss (2016). “Modeling human enteric dysbiosis and rotavirus immunity in gnotobiotic pigs.” Gut pathogens 8(1): 51.
  4. Noar, J. D. (2016). “Aerobic Hydrogen Production in Azotobacter vinelandii: Genetics, Physiology, and Optimization.”
  5. Monteagudo-Mera, A., J. Arthur, C. Jobin, T. Keku, J. Bruno-Barcena and M. Azcarate-Peril (2016). “High purity galacto-oligosaccharides enhance specific Bifidobacterium species and their metabolic activity in the mouse gut microbiome.” Beneficial microbes 7(2): 247-264.
  6. Mideo, N., J. A. Bailey, N. J. Hathaway, B. Ngasala, D. L. Saunders, C. Lon, O. Kharabora, A. Jamnik, S. Balasubramanian and A. Björkman (2016). “A deep sequencing tool for partitioning clearance rates following antimalarial treatment in polyclonal infections.” Evolution, medicine, and public health 2016(1): 21-36.
  7. Medina, E., I. M. Pérez‐Díaz, F. Breidt, J. Hayes, W. Franco, N. Butz and M. A. Azcarate‐Peril (2016). “Bacterial Ecology of Fermented Cucumber Rising pH Spoilage as Determined by Nonculture‐Based Methods.” Journal of food science 81(1).
  8. Grogan, K. E., G. J. McGinnis, M. L. Sauther, F. P. Cuozzo and C. M. Drea (2016). “Next-generation genotyping of hypervariable loci in many individuals of a non-model species: technical and theoretical implications.” BMC genomics 17(1): 204.
  9. Fromen, C. A., T. B. Rahhal, G. R. Robbins, M. P. Kai, T. W. Shen, J. C. Luft and J. M. DeSimone (2016). “Nanoparticle surface charge impacts distribution, uptake and lymph node trafficking by pulmonary antigen-presenting cells.” Nanomedicine: Nanotechnology, Biology and Medicine 12(3): 677-687.
  10. Dagher, S. F. and J. M. Bruno-Barcena (2016). “A novel N-terminal region of the membrane β-hexosyltransferase: its role in secretion of soluble protein by Pichia pastoris.” Microbiology 162(1): 23-34.
  11. Arnold, J. W., J. Roach and M. A. Azcarate-Peril (2016). “Emerging technologies for gut microbiome research.” Trends in microbiology 24(11): 887-901.
  1. Wong, S. M. (2015). Assembly of intestinal microbiota is determined by host development, diet, and environment, The University of North Carolina at Chapel Hill.
  2. Whitham, J. M. (2015). Identifying Genetic Targets and Growth Conditions for Higher Ethanol Production by the Synthesis Gas Fermenting Bacterium Clostridium ljungdahlii, North Carolina State University.
  3. Venema, K. and A. P. do Carmo (2015). Probiotics and prebiotics, Caister Academic Press.
  4. Van Treuren, W., L. Ponnusamy, R. J. Brinkerhoff, A. Gonzalez, C. M. Parobek, J. J. Juliano, T. G. Andreadis, R. C. Falco, L. B. Ziegler and N. Hathaway (2015). “Variation in the microbiota of Ixodes ticks with regard to geography, species, and sex.” Applied and environmental microbiology 81(18): 6200-6209.
  5. Tzanetakis, G. N., M. A. Azcarate-Peril, S. Zachaki, P. Panopoulos, E. G. Kontakiotis, P. N. Madianos and K. Divaris (2015). “Comparison of bacterial community composition of primary and persistent endodontic infections using pyrosequencing.” Journal of endodontics 41(8): 1226-1233.
  6. Thompson, A. L., A. Monteagudo-Mera, M. B. Cadenas, M. L. Lampl and M. Azcarate-Peril (2015). “Milk-and solid-feeding practices and daycare attendance are associated with differences in bacterial diversity, predominant communities, and metabolic and immune function of the infant gut microbiome.” Frontiers in cellular and infection microbiology 5.
  7. Seidel, D., K. Hicks, S. Taddeo, M. Azcarate-Peril, R. Carroll and N. Turner (2015). “Dried plums modify colon microbiota composition and spatial distribution, and protect against chemically-induced carcinogenesis.” The FASEB Journal 29(1 Supplement): 394.397.
  8. Rodgers-Vieira, E. A., Z. Zhang, A. C. Adrion, A. Gold and M. D. Aitken (2015). “Identification of anthraquinone-degrading bacteria in soil contaminated with polycyclic aromatic hydrocarbons.” Applied and environmental microbiology 81(11): 3775-3781.
  9. Ritchie, L. E., S. S. Taddeo, B. R. Weeks, F. Lima, S. A. Bloomfield, M. A. Azcarate-Peril, S. R. Zwart, S. M. Smith and N. D. Turner (2015). “Space environmental factor impacts upon murine colon microbiota and mucosal homeostasis.” PloS one 10(6): e0125792.
  10. Ritchie, L. E., J. M. Sturino, R. J. Carroll, L. W. Rooney, M. A. Azcarate-Peril and N. D. Turner (2015). “Polyphenol-rich sorghum brans alter colon microbiota and impact species diversity and species richness after multiple bouts of dextran sodium sulfate-induced colitis.” FEMS microbiology ecology 91(3).
  11. Reina, L., I. Pérez-Díaz, F. Breidt, M. A. Azcarate-Peril, E. Medina and N. Butz (2015). “Characterization of the microbial diversity in yacon spontaneous fermentation at 20° C.” International journal of food microbiology 203: 35-40.
  12. Piccini, C. and J. García-Alonso (2015). “Bacterial diversity patterns of the intertidal biofilm in urban beaches of Río de la Plata.” Marine pollution bulletin 91(2): 476-482.
  13. Noar, J., T. Loveless, J. L. Navarro-Herrero, J. W. Olson and J. M. Bruno-Bárcena (2015). “Aerobic hydrogen production via nitrogenase in Azotobacter vinelandii CA6.” Applied and environmental microbiology 81(13): 4507-4516.
  14. Kleiman, S. C., H. J. Watson, E. C. Bulik-Sullivan, E. Y. Huh, L. M. Tarantino, C. M. Bulik and I. M. Carroll (2015). “The intestinal microbiota in acute anorexia nervosa and during renourishment: relationship to depression, anxiety, and eating disorder psychopathology.” Psychosomatic medicine 77(9): 969.
  15. Keys, J. R., S. Zhou, J. A. Anderson, J. J. Eron Jr, L. A. Rackoff, C. Jabara and R. Swanstrom (2015). “Primer ID informs next-generation sequencing platforms and reveals preexisting drug resistance mutations in the HIV-1 reverse transcriptase coding domain.” AIDS research and human retroviruses 31(6): 658-668.
  16. Fraga, M., S. Fernández, C. Cajarville, M. Martínez, J. A. Abin-Carriquiry and P. Zunino (2015). “In vitro modulation of rumen microbiota and fermentation by native microorganisms isolated from the rumen of a fed-exclusively-on-pasture bovine.” Annals of microbiology 65(4): 2355-2362.
  17. Fraga, M. (2015). “Modulación de la microbiota y la fermentación ruminal con microorganismos ruminales nativos.”
  18. Douglas, G. L., M. A. Azcarate‐Peril and T. R. Klaenhammer (2015). “Genomic Evolution of Lactic Acid Bacteria: From Single Gene Function to the Pan‐genome.” Biotechnology of Lactic Acid Bacteria: Novel Applications: 32.
  19. Bruno-Barcena, J. M. and M. A. Azcarate-Peril (2015). “Galacto-oligosaccharides and colorectal cancer: feeding our intestinal probiome.” Journal of functional foods 12: 92-108.
  20. Becker-Dreps, S., I. Allali, A. Monteagudo, S. Vilchez, M. G. Hudgens, E. T. Rogawski, I. M. Carroll, L. E. Zambrana, F. Espinoza and M. A. Azcarate-Peril (2015). “Gut microbiome composition in young nicaraguan children during diarrhea episodes and recovery.” The American journal of tropical medicine and hygiene 93(6): 1187-1193.
  21. Bahr, S., B. Tyler, N. Wooldridge, B. Butcher, T. Burns, L. Teesch, C. Oltman, M. Azcarate-Peril, J. Kirby and C. Calarge (2015). “Use of the second-generation antipsychotic, risperidone, and secondary weight gain are associated with an altered gut microbiota in children.” Translational psychiatry 5(10): e652.
  22. Bahr, S. (2015). Characterization of risperidone-induced weight gain mediated by alterations of the gut microbiome and suppression of host energy expenditure, The University of Iowa.
  23. Allali, I., S. Delgado, P. I. Marron, A. Astudillo, J. J. Yeh, H. Ghazal, S. Amzazi, T. Keku and M. A. Azcarate-Peril (2015). “Gut microbiome compositional and functional differences between tumor and non-tumor adjacent tissues from cohorts from the US and Spain.” Gut microbes 6(3): 161-172.
  1. Yang, T. (2014). Microbial community dynamics of the Deepwater horizon oil spill, The University of North Carolina at Chapel Hill.
  2. Xu, Y. (2014). Interaction of dietary coarse corn with litter conditions on broiler live performance and gastrointestinal tract function, North Carolina State University.
  3. Ponnusamy, L., A. Gonzalez, W. Van Treuren, S. Weiss, C. M. Parobek, J. J. Juliano, R. Knight, R. M. Roe, C. S. Apperson and S. R. Meshnick (2014). “Diversity of Rickettsiales in the microbiome of the lone star tick, Amblyomma americanum.” Applied and environmental microbiology 80(1): 354-359.
  4. McKay, L. J. (2014). Microbial ecology of a manmade oil spill in the Gulf of Mexico and a natural, hydrothermal oil seep in the Gulf of California, The University of North Carolina at Chapel Hill.
  5. Ibarbalz, F. M., M. V. Pérez, E. L. Figuerola and L. Erijman (2014). “The bias associated with amplicon sequencing does not affect the quantitative assessment of bacterial community dynamics.” PloS one 9(6): e99722.
  6. Grogan, K. E. (2014). Exploring the Impacts of Major Histocompatibility Complex Variation on Fitness in the Ring-tailed Lemur (Lemur catta): Parasite Resistance, Survival, Mate Choice and Olfactory Ornamentation, and Reproduction, Duke University.
  7. Deshmukh, H. S., Y. Liu, O. R. Menkiti, J. Mei, N. Dai, C. E. O’leary, P. M. Oliver, J. K. Kolls, J. N. Weiser and G. S. Worthen (2014). “The microbiota regulates neutrophil homeostasis and host resistance to Escherichia coli K1 sepsis in neonatal mice.” Nature medicine 20(5): 524-530.
  8. Cardman, Z. (2014). Active prokaryotic communities along a thermally and geochemically variable transect in Guaymas Basin hydrothermal sediments, The University of North Carolina at Chapel Hill.
  1. Wong, S., T. Waldrop, S. Summerfelt, J. Davidson, F. Barrows, P. B. Kenney, T. Welch, G. D. Wiens, K. Snekvik and J. F. Rawls (2013). “Aquacultured rainbow trout (Oncorhynchus mykiss) possess a large core intestinal microbiota that is resistant to variation in diet and rearing density.” Applied and environmental microbiology 79(16): 4974-4984.
  2. Sofi, M. H., R. R. Gudi, S. Karumuthil-Melethil, N. Perez, B. M. Johnson and C. Vasu (2013). “pH of drinking water influences the composition of gut microbiome and type 1 diabetes incidence.” Diabetes: DB_130981.
  3. Sandoval-Espinola, W. J., S. T. Makwana, M. S. Chinn, M. R. Thon, M. A. Azcárate-Peril and J. M. Bruno-Barcena (2013). “Comparative phenotypic analysis and genome sequence of Clostridium beijerinckii SA-1, an offspring of NCIMB 8052.” Microbiology 159(12): 2558-2570.
  4. Resistant, C. I. M. T. I. (2013). “Aquacultured Rainbow Trout.”
  5. Noar, J. D. and J. M. Bruno-Bárcena (2013). “Complete genome sequences of Azotobacter vinelandii wild-type strain CA and tungsten-tolerant mutant strain CA6.” Genome announcements 1(3): e00313-00313.
  6. Menon, R., S. E. Watson, L. N. Thomas, C. D. Allred, A. Dabney, M. A. Azcarate-Peril and J. M. Sturino (2013). “Diet complexity and estrogen receptor β-status affect the composition of the murine intestinal microbiota.” Applied and environmental microbiology: AEM. 01182-01113.
  7. McCoy, A. N., F. Araujo-Perez, A. Azcarate-Peril, J. J. Yeh, R. S. Sandler and T. O. Keku (2013). “Fusobacterium is associated with colorectal adenomas.” PloS one 8(1): e53653.
  8. Keku, T. O., A. N. McCoy and A. M. Azcarate-Peril (2013). “Fusobacterium spp. and colorectal cancer: cause or consequence?” Trends in microbiology 21(10): 506-508.
  9. Devine, A. A., A. Gonzalez, K. E. Speck, R. Knight, M. Helmrath, P. K. Lund and M. A. Azcarate-Peril (2013). “Impact of ileocecal resection and concomitant antibiotics on the microbiome of the murine jejunum and colon.” PLoS One 8(8): e73140.
  10. Dagher, S. F., M. A. Azcarate-Peril and J. M. Bruno-Bárcena (2013). “Heterologous Expression of a Bioactive β-Hexosyltransferase, an Enzyme Producer of Prebiotics, from Sporobolomyces singularis.” Applied and environmental microbiology 79(4): 1241-1249.
  11. Carper, D. L. (2013). A comparative study of the bacterial communities in California vernal pools.
  12. Bruno-Barcena, J. M., M. S. Chinn and A. M. Grunden (2013). “Genome sequence of the autotrophic acetogen Clostridium autoethanogenum JA1-1 strain DSM 10061, a producer of ethanol from carbon monoxide.” Genome announcements 1(4): e00628-00613.

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Azcarate-Peril, M. A., D. M. Foster, M. B. Cadenas, M. R. Stone, S. K. Jacobi, S. H. Stauffer, A. Pease and J. L. Gookin (2011). “Acute necrotizing enterocolitis of preterm piglets is characterized by dysbiosis of ileal mucosa-associated bacteria.” Gut microbes 2(4): 234-243.
  1. Montero, D. V. B. (2010). Nutritional influences on the ultra-structural development of the small intestinal epithelium of the perinatal turkey embryo and poultry, North Carolina State University.
  2. Goicoechea, S. M., B. Bednarski, C. Stack, D. W. Cowan, K. Volmar, L. Thorne, E. Cukierman, A. K. Rustgi, T. Brentnall and R. F. Hwang (2010). “Isoform-specific upregulation of palladin in human and murine pancreas tumors.” PloS one 5(4): e10347.