Recent Publications
Wei Liu, Jun Li, Yitao Tang, Yining Zhao, Chaozhong Liu, Meiyi Song, Zhenlin Ju, Shwetha V. Kumar, Yiling Lu, Rehan Akbani, Gordon B. Mills & Han Liang. DrBioRight 2.0: an LLM-powered bioinformatics chatbot for large-scale cancer functional proteomics analysis
Ran Zhang, Mu Yang, Jacob Schreiber, Diana R. O’Day, James M. A. Turne, Jay Shendure, William Stafford Noble, Christine M. Disteche, and Xinxian Deng. Cross‑species imputation and comparison of single‑cell transcriptomic profiles
Brian Gural, Logan Kirkland, Abigail Hockett, Peyton Sandroni, Jiandong Zhang, Manuel Rosa-Garrido, Samantha K. Swift, Douglas J. Chapski, Michael A. Flinn, Caitlin C. O’Meara, Thomas M. Vondriska, Michaela Patterson, Brian C. Jensen, Christoph D. Rau. Published in PLOS Genetics July 24, 2025. Novel insights into post-myocardial infarction cardiac remodeling through algorithmic detection of cell-type composition shifts
Tamir TY, Chaudhary S, Li AX, Trojan SE, Flower CT, Vo P, Cui Y, Davis JC, Mukkamala RS, Venditti FN, Hillis AL, Toker A, Vander Heiden MG, Spinelli JB, Kennedy NJ, Davis RJ, White FM. Published in bioRxiv 2024 Aug 29. Structural and systems characterization of phosphorylation on metabolic enzymes identifies sex-specific metabolic reprogramming in obesity. 
Can Chen, Chen Liao, and Yang-Yu Liu published in Nature April 2023 Paper: Teasing out missing reactions in genome-scale metabolic networks through hypergraph learning 
Can Chen, Xu-Wen Wang, and Yang-Yu Liu published in arXiv online publication 2312.07737v2 on February 8, 2024: Stability of Ecological Systems: A Theoretical Review
