Department of Genetics faculty and collaborators published sixteen papers between July 23 and August 5.
Genome-wide Association Study of Susceptibility to Particulate Matter-Associated QT Prolongation.
Gondalia R, Avery CL, Napier MD, Méndez-Giráldez R, Stewart JD, Sitlani CM, Li Y, Wilhelmsen KC, Duan Q, Roach J, North KE, Reiner AP, Zhang ZM, Tinker LF, Yanosky JD, Liao D, Whitsel EA.
Environ Health Perspect. 2017 Jun 8;125(6):067002. doi: 10.1289/EHP347.
PMID: 28749367
O’Flanagan CH, Rossi EL, McDonell SB, Chen X, Tsai YH, Parker JS, Usary J, Perou CM, Hursting SD.
NPJ Breast Cancer. 2017 Jul 17;3:26. doi: 10.1038/s41523-017-0027-5. eCollection 2017.
PMID: 28748213
Sequencing and de novo assembly of 150 genomes from Denmark as a population reference.
Maretty L, Jensen JM, Petersen B, Sibbesen JA, Liu S, Villesen P, Skov L, Belling K, Theil Have C, Izarzugaza JMG, Grosjean M, Bork-Jensen J, Grove J, Als TD, Huang S, Chang Y, Xu R, Ye W, Rao J, Guo X, Sun J, Cao H, Ye C, van Beusekom J, Espeseth T, Flindt E, Friborg RM, Halager AE, Le Hellard S, Hultman CM, Lescai F, Li S, Lund O, Løngren P, Mailund T, Matey-Hernandez ML, Mors O, Pedersen CNS, Sicheritz-Pontén T, Sullivan P, Syed A, Westergaard D, Yadav R, Li N, Xu X, Hansen T, Krogh A, Bolund L, Sørensen TIA, Pedersen O, Gupta R, Rasmussen S, Besenbacher S, Børglum AD, Wang J, Eiberg H, Kristiansen K, Brunak S, Schierup MH.
Nature. 2017 Jul 26. doi: 10.1038/nature23264. [Epub ahead of print]
PMID: 28746312
Horikoshi M, Pasquali L, Wiltshire S, Huyghe JR, Mahajan A, Asimit JL, Ferreira T, Locke AE, Robertson NR, Wang X, Sim X, Fujita H, Hara K, Young R, Zhang W, Choi S, Chen H, Kaur I, Takeuchi F, Fontanillas P, Thuillier D, Yengo L, Below JE, Tam CH, Wu Y, Abecasis G, Altshuler D, Bell GI, Blangero J, Burtt NP, Duggirala R, Florez JC, Hanis CL, Seielstad M, Atzmon G, Chan JC, Ma RC, Froguel P, Wilson JG, Bharadwaj D, Dupuis J, Meigs JB, Cho YS, Park T, Kooner JS, Chambers JC, Saleheen D, Kadowaki T, Tai ES, Mohlke KL, Cox NJ, Ferrer J, Zeggini E, Kato N, Teo YY, Boehnke M, McCarthy MI, Morris AP; T2D-GENES Consortium.
Hum Mol Genet. 2016 May 15;25(10):2070-2081. Epub 2016 Feb 23.
PMID: 26911676
Lewis MA, Stine A, Paquin RS, Mansfield C, Wood D, Rini C, Roche MI, Powell CM, Berg JS, Bailey DB Jr.
Genet Med. 2017 Aug 3. doi: 10.1038/gim.2017.93. [Epub ahead of print]
PMID: 28771249
Correcting nucleotide-specific biases in high-throughput sequencing data.
Wang JR, Quach B, Furey TS.
BMC Bioinformatics. 2017 Aug 1;18(1):357. doi: 10.1186/s12859-017-1766-x.
PMID: 28764645
Genome-wide association analysis identifies common variants influencing infant brain volumes.
Xia K, Zhang J, Ahn M, Jha S, Crowley JJ, Szatkiewicz J, Li T, Zou F, Zhu H, Hibar D, Thompson P; ENIGMA Consortium, Sullivan PF, Styner M, Gilmore JH, Knickmeyer RC.
Transl Psychiatry. 2017 Aug 1;7(8):e1188. doi: 10.1038/tp.2017.159.
PMID: 28763065
Strande NT, Riggs ER, Buchanan AH, Ceyhan-Birsoy O, DiStefano M, Dwight SS, Goldstein J, Ghosh R, Seifert BA, Sneddon TP, Wright MW, Milko LV, Cherry JM, Giovanni MA, Murray MF, O’Daniel JM, Ramos EM, Santani AB, Scott AF, Plon SE, Rehm HL, Martin CL, Berg JS.
Am J Hum Genet. 2017 Jun 1;100(6):895-906. doi: 10.1016/j.ajhg.2017.04.015. Epub 2017 May 25.
PMID: 28552198
Xu Z, Zhang G, Jin F, Chen M, Furey TS, Sullivan PF, Qin Z, Hu M, Li Y.
Bioinformatics. 2016 Mar 1;32(5):650-6. doi: 10.1093/bioinformatics/btv650. Epub 2015 Nov 4.
PMID: 26543175
APOBEC3B cytidine deaminase targets the non-transcribed strand of tRNA genes in yeast.
Saini N, Roberts SA, Sterling JF, Malc EP, Mieczkowski PA, Gordenin DA.
DNA Repair (Amst). 2017 May;53:4-14. doi: 10.1016/j.dnarep.2017.03.003. Epub 2017 Mar 21
PMID: 28351647
Root microbiota drive direct integration of phosphate stress and immunity.
Castrillo G, Teixeira PJ, Paredes SH, Law TF, de Lorenzo L, Feltcher ME, Finkel OM, Breakfield NW, Mieczkowski P, Jones CD, Paz-Ares J, Dangl JL.
Nature. 2017 Mar 23;543(7646):513-518. doi: 10.1038/nature21417. Epub 2017 Mar 15.
PMID: 28297714
Patel RY, Shah N, Jackson AR, Ghosh R, Pawliczek P, Paithankar S, Baker A, Riehle K, Chen H, Milosavljevic S, Bizon C, Rynearson S, Nelson T, Jarvik GP, Rehm HL, Harrison SM, Azzariti D, Powell B, Babb L, Plon SE, Milosavljevic A; ClinGen Resource.
Genome Med. 2017 Jan 12;9(1):3. doi: 10.1186/s13073-016-0391-z.
PMID: 28081714
Co-occurring Down syndrome and SUCLA2-related mitochondrial depletion syndrome.
Couser NL, Marchuk DS, Smith LD, Arreola A, Kaiser-Rogers KA, Muenzer J, Pandya A, Gucsavas-Calikoglu M, Powell CM.
Am J Med Genet A. 2017 Jul 27. doi: 10.1002/ajmg.a.38351. [Epub ahead of print]
PMID: 28749033
Crowther AJ, Ocasio JK, Fang F, Meidinger J, Wu J, Deal AM, Chang SX, Yuan H, Schmid R, Davis I, Gershon TR.
Cancer Res. 2016 Jun 1;76(11):3211-23. doi: 10.1158/0008-5472.CAN-15-0025. Epub 2016 Apr 13.
PMID: 27197166
Leung JY, Kim WY.
Cancer Discov. 2017 Aug;7(8):802-804. doi: 10.1158/2159-8290.CD-17-0610.
PMID: 28765116
Lamellipodia are crucial for haptotactic sensing and response.
King SJ, Asokan SB, Haynes EM, Zimmerman SP, Rotty JD, Alb JG Jr, Tagliatela A, Blake DR, Lebedeva IP, Marston D, Johnson HE, Parsons M, Sharpless NE, Kuhlman B, Haugh JM, Bear JE.
J Cell Sci. 2016 Jun 15;129(12):2329-42. doi: 10.1242/jcs.184507. Epub 2016 May 12.
PMID: 27173494