Skip to main content
UNC Cortical Thickness logo UNCCorticalThickness UNC Cortical Thickness Analysis based on ITK
ShapeToolsIcon ShapeTools (SPHARM shape analysis) The SPHARM shape analysis toolset is used for doing local statistical shape analysis. ITK based.
FiberTrackingIcon FiberTracking The FT tool is a cross-platform system to explore diffusion tensor images and to reconstruct fiber tracts:
arrow.gif Platform independent
arrow.gif Fiber tracts between ROI
arrow.gif FA and ADC generation
DTICheckerIcon DTIChecker DTIChecker is a program to check and correct DTI images
arrow.gif Slice artifacts detection
arrow.gif Motion artifacts detection and correction
arrow.gif Average creation
MeshValmetIcon MeshValmet MeshValmet surface difference evaluation tool
itkEMSIcon itkEMS itkEMS is a program to segment brain tissue
arrow.gif Multi channel support
arrow.gif Fast EM segmentation
arrow.gif XML support for parameters
FiberViewerIcon FiberViewer Fiber Viewer is a program to analyze fibers extracted from the Fiber Tracking tool. It provides:
arrow.gif Several methods for clustering
arrow.gif Tools for manipulate fibers
arrow.gif Methods to analyse FA and ADC along fibers
ImagineIcon Imagine Program which create dynamic pipeline
arrow.gif Up to 20 filters (included affine registration and fluid warping)
arrow.gif Easy to use and to parametrize
arrow.gif Wizard assistant for running pipeline automatically
IntensityRescalerIcon IntensityRescaler Program which rescale image in intensity
arrow.gif Intensity rescaling based on segmentation
arrow.gif User can define regions dynamically
arrow.gif Automatic transfert function generation
DofviewIcon DofView DofView is a tool used to analysis Deformation Field created by the WarpTool or AtlasBuilder software.
arrow.gif Several measurement: Jacobian, Divergence …
arrow.gif Convert Linux/Solaris DoF to Windows (Imagine) DOF
arrow.gif 3D display of the deformation field
Byu2voxIcon Byu2vox Byu2Vox is a program that convert a BYU surface to a voxel volume.
arrow.gifSpecification of the bounding box
arrow.gifMulti-images processing (batch mode)
IrisIcon Iris IRIS is intended help doctors to create 3D models of structures within the brain:
arrow.gif Displays the data in 4 windows.
arrow.gif Build a 3D model of a structure from any volumetric data set
arrow.gif Drawing tools
SnapIcon Snap Snake Automatic Partitioning:
arrow.gifRegion-probability snake (competition snake).
arrow.gif Propagation snake stopping at region discontinuities.
arrow.gif Region of interest painting.
ValmetIcon Valmet Valmet is a tool to improve segmentations. Valmet used several algorithms to compare segmentations in 2D and 3D:
arrow.gif Complex algortihms implemented
arrow.gif Dynamic 2D and 3D vizualisation
arrow.gif Differences color display along the surface
ImconvertIcon Imconvert Program which convert .gipl .hdr .raw . v0 .mha images
arrow.gif Select input/output type
arrow.gif Select patient orientation
arrow.gif Graphic user interface (very usefull under Windows)