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UNCCorticalThickness |
UNC Cortical Thickness Analysis based on ITK |
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ShapeTools (SPHARM shape analysis) |
The SPHARM shape analysis toolset is used for doing local statistical shape analysis. ITK based. |
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FiberTracking |
The FT tool is a cross-platform system to explore diffusion tensor images and to reconstruct fiber tracts:
 Platform independent
Fiber tracts between ROI
FA and ADC generation |
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DTIChecker |
DTIChecker is a program to check and correct DTI images
Slice artifacts detection
Motion artifacts detection and correction
Average creation |
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MeshValmet |
MeshValmet surface difference evaluation tool |
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itkEMS |
itkEMS is a program to segment brain tissue
Multi channel support
Fast EM segmentation
XML support for parameters |
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FiberViewer |
Fiber Viewer is a program to analyze fibers extracted from the Fiber Tracking tool. It provides:
Several methods for clustering
Tools for manipulate fibers
Methods to analyse FA and ADC along fibers |
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Imagine |
Program which create dynamic pipeline
Up to 20 filters (included affine registration and fluid warping)
Easy to use and to parametrize
Wizard assistant for running pipeline automatically |
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IntensityRescaler |
Program which rescale image in intensity
Intensity rescaling based on segmentation
User can define regions dynamically
Automatic transfert function generation |
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DofView |
DofView is a tool used to analysis Deformation Field created by the WarpTool or AtlasBuilder software.
Several measurement: Jacobian, Divergence …
Convert Linux/Solaris DoF to Windows (Imagine) DOF
3D display of the deformation field |
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Byu2vox |
Byu2Vox is a program that convert a BYU surface to a voxel volume.
Specification of the bounding box
Multi-images processing (batch mode) |
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Iris |
IRIS is intended help doctors to create 3D models of structures within the brain:
Displays the data in 4 windows.
Build a 3D model of a structure from any volumetric data set
Drawing tools |
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Snap |
Snake Automatic Partitioning:
Region-probability snake (competition snake).
Propagation snake stopping at region discontinuities.
Region of interest painting. |
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Valmet |
Valmet is a tool to improve segmentations. Valmet used several algorithms to compare segmentations in 2D and 3D:
Complex algortihms implemented
Dynamic 2D and 3D vizualisation
Differences color display along the surface |
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Imconvert |
Program which convert .gipl .hdr .raw . v0 .mha images
Select input/output type
Select patient orientation
Graphic user interface (very usefull under Windows) |