Department of Genetics Publications for September 10th – 23rd, 2023

Department of Genetics faculty, postdocs, students and collaborators published 7 papers during September 10th – 23rd, 2023.

 

Chromatin loop dynamics during cellular differentiation are associated with changes to both anchor and internal regulatory features. 

Bond ML, Davis ES, Quiroga IY, Dey A, Kiran M, Love MI, Won H, Phanstiel DH.

Genome Res. 2023 Sep 12. doi: 10.1101/gr.277397.122. Online ahead of print.

PMID: 37699658

 

Single-Cell Transcriptional and Epigenetic Profiles of Male Breast Cancer Nominate Salient Cancer-Specific Enhancers. 

Kim H, Wisniewska K, Regner MJ, Thennavan A, Spanheimer PM, Franco HL.

Int J Mol Sci. 2023 Aug 22;24(17):13053. doi: 10.3390/ijms241713053.

PMID: 37685859 Free PMC article.

 

Two unrelated fetuses with ITPR1 missense variants and fetal hydrops. 

Harris S, Putra M, Gilmore KL, Vora NL.

Prenat Diagn. 2023 Sep 13. doi: 10.1002/pd.6439. Online ahead of print.

PMID: 37705153

 

Asynchronous functional linear regression models for longitudinal data in reproducing kernel Hilbert space. 

Li T, Zhu H, Li T, Zhu H.

Biometrics. 2023 Sep;79(3):1880-1895. doi: 10.1111/biom.13767. Epub 2022 Oct 17.

PMID: 36205584

 

Comprehensive evaluation of methods for differential expression analysis of metatranscriptomics data. 

Cho H, Qu Y, Liu C, Tang B, Lyu R, Lin BM, Roach J, Azcarate-Peril MA, Aguiar Ribeiro A, Love MI, Divaris K, Wu D.

Brief Bioinform. 2023 Sep 20;24(5):bbad279. doi: 10.1093/bib/bbad279.

PMID: 37738402

 

Functional characterization of Alzheimer’s disease genetic variants in microglia. 

Yang X, Wen J, Yang H, Jones IR, Zhu X, Liu W, Li B, Clelland CD, Luo W, Wong MY, Ren X, Cui X, Song M, Liu H, Chen C, Eng N, Ravichandran M, Sun Y, Lee D, Van Buren E, Jiang MZ, Chan CSY, Ye CJ, Perera RM, Gan L, Li Y, Shen Y.

Nat Genet. 2023 Sep 21. doi: 10.1038/s41588-023-01506-8. Online ahead of print.

PMID: 37735198

 

Prenatal versus Postnatal Diagnosis of 22q11.2 Deletion Syndrome: Cardiac and Non-Cardiac Outcomes through 1 Year of Age. 

Freud LR, Galloway S, Crowley TB, Moldenhauer J, Swillen A, Breckpot J, Borrell A, Vora NL, Cuneo B, Hoffman H, Gilbert L, Nowakowska B, Geremek M, Kutkowska-Kaźmierczak A, Vermeesch JR, Devriendt K, Busa T, Sigaudy S, Vigneswaran T, Simpson JM, Dungan J, Gotteiner N, Gloning KP, Digilio MC, Unolt M, Putotto C, Marino B, Repetto G, Fadic M, Garcia-Minaur S, Buil AA, Thomas MA, Fruitman D, Beecroft T, Hui PW, Oskarsdottir S, Bradshaw R, Criebaum A, Norton ME, Lee T, Geiger M, Dunnington L, Isaac J, Wilkins-Haug L, Hunter L, Izzi C, Toscano M, Ghi T, McGlynn J, Grati FR, Emanuel BS, Gaiser K, Gaynor JW, Goldmuntz E, McGinn DE, Schindewolf E, Tran O, Zackai EH, Yan Q, Bassett A, Wapner R, McDonald-McGinn DM.

Am J Obstet Gynecol. 2023 Sep 15:S0002-9378(23)00611-7. doi: 10.1016/j.ajog.2023.09.005. Online ahead of print.

PMID: 37717890