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Marsico Lung Institute Publications for October & November 2024

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Marsico Lung Institute faculty, postdoc, student, and collaborator publications for August and September 2024 included papers appearing in NPJ Digital Medicine, The Lancet – Respiratory Mecicine, and The Journal of Clinical Investigation. Check out the full list below:

  1. Arjomandi M, Zeng S, Barjaktarevic I, Bleecker ER, Bowler RP, Criner GJ, Comellas AP, Couper DJ, Curtis JL, Dransfield MT, Drummond MB, Fortis S, Han MK, Hansel NN, Hoffman EA, Kaner RJ, Kanner RE, Krishnan JA, Labaki W, Ortega VE, Peters SP, Rennard SI, Cooper CB, Tashkin DP, Paine R 3rd, Woodruff PG. Phenotypes and Trajectories of Tobacco-exposed Persons with Preserved Spirometry: Insights from Lung Volumes. Ann Am Thorac Soc. 2024 Nov 25. doi: 10.1513/AnnalsATS.202405-527OC. Epub ahead of print. PMID: 39586032.
  2. Bathgate CJ, Smith ED, Murphy NH, Quittner AL, Riekert KA, Goralski JL, Holm KE. Coping and learning to Manage Stress with cystic fibrosis (CALM): A multisite telehealth randomized controlled trial to reduce depression and anxiety symptoms in adults with cystic fibrosis. J Cyst Fibros. 2024 Nov 24:S1569-1993(24)01810-1. doi: 10.1016/j.jcf.2024.11.002. Epub ahead of print. PMID: 39581781.
  3. Gardner RA, Ferkol TW, Davis SD, Rosenfeld M, Sagel SD, Dell SD, Milla CE, Li L, Lin FC, Sullivan KM, Zariwala MA, Knowles MR, Leigh MW; Genetic Disorders of Mucociliary Clearance Consortium. Therapies Used by Children With Primary Ciliary Dyskinesia: A Natural History Study. Pediatr Pulmonol. 2024 Nov 22:e27412. doi: 10.1002/ppul.27412. Epub ahead of print. PMID: 39575633.
  4. Hagood JS. A Developmental Step Along the ‘Omics Journey. Am J Respir Cell Mol Biol. 2024 Nov 20. doi: 10.1165/rcmb.2024-0524ED. Epub ahead of print. PMID: 39565183.
  5. Esther CR Jr, Rua M, Chen H, Cromwell E, Setoguchi S. Process and validity of linking cystic fibrosis patient registry with national Medicaid databases. J Cyst Fibros. 2024 Nov 19:S1569-1993(24)01805-8. doi: 10.1016/j.jcf.2024.10.012. Epub ahead of print. PMID: 39567301.
  6. Heavner SF, Kumar VK, Anderson W, Al-Hakim T, Dasher P, Armaignac DL, Clermont G, Cobb JP, Manion S, Remy KE, Reuter-Rice K, Haendel M. Critical Data for Critical Care: A Primer on Leveraging Electronic Health Record Data for Research From Society of Critical Care Medicine’s Panel on Data Sharing and Harmonization. Crit Care Explor. 2024 Nov 15;6(11):e1179. doi: 10.1097/CCE.0000000000001179. PMID: 39559555; PMCID: PMC11573330.
  7. Le Souëf PN, Adachi Y, Anastasiou E, Ansotegui IJ, Badellino HA, Banzon T, Beltrán CP, D’Amato G, El-Sayed ZA, Gómez RM, Hossny E, Kalayci Ö, Morais-Almeida M, Nieto-Garcia A, Peden DB, Phipatanakul W, Wang JY, Wan IJ, Wong G, Xepapadaki P, Papadopoulos NG. Global change, climate change, and asthma in children: Direct and indirect effects – A WAO Pediatric Asthma Committee Report. World Allergy Organ J. 2024 Nov 8;17(11):100988. doi: 10.1016/j.waojou.2024.100988. PMID: 39582513; PMCID: PMC11584610.
  8. Heinzelmann K, Fysikopoulos A, Jaquin TJ, Peper-Gabriel JK, Hansbauer EM, Grüner S, Prassler J, Wurzenberger C, Kennedy JGC, Snead JY, Wrennall JA, Heinig K, Wurzenberger C, Bel Aiba RS, Tarran R, Livraghi-Butrico A, Fitzgerald MF, Anderson GP, Rothe C, Matschiner G, Olwill SA, Hagner M. Pulmonary-delivered Anticalin Jagged-1 antagonists reduce experimental airway mucus hyperproduction and obstruction. Am J Physiol Lung Cell Mol Physiol. 2024 Nov 5. doi: 10.1152/ajplung.00059.2024. Epub ahead of print. PMID: 39499257.
  9. Lehmann M, Krishnan R, Sucre J, Kulkarni HS, Pineda RH, Anderson C, Banovich NE, Behrsing HP, Dean CH, Haak A, Gosens R, Kaminski N, Zagorska A, Koziol-White C, Metcalf JP, Kim YH, Loebel C, Neptune E, Noel A, Raghu G, Sewald K, Sharma A, Suki B, Sperling A, Tatler A, Turner S, Rosas IO, van Ry P, Wille T, Randell SH, Pryhuber G, Rojas M, Bourke J, Königshoff M. Precision Cut Lung Slices: Emerging Tools for Preclinical and Translational Lung Research. An Official American Thoracic Society Workshop Report. Am J Respir Cell Mol Biol. 2024 Nov 5. doi: 10.1165/rcmb.2024-0479ST. Epub ahead of print. PMID: 39499861.
  10. O’Lenick CR, Cleland SE, Neas LM, Turner MW, Mcinroe EM, Hill KL, Ghio AJ, Rebuli ME, Jaspers I, Rappold AG. Impact of Heat on Respiratory Hospitalizations among Older Adults in 120 Large US Urban Areas. Ann Am Thorac Soc. 2024 Nov 5. doi: 10.1513/AnnalsATS.202405-470OC. Epub ahead of print. PMID: 39499766.
  11. Sines B, Morrison CB, Donaldson JM, Ahmad A, Krishnamurthy A, Peden DB, Ehre C. Asthma and COVID-19: Unveiling Outcome Disparities and Treatment Impact Based on Distinct Endotypes. Ann Am Thorac Soc. 2024 Nov 5. doi: 10.1513/AnnalsATS.202405-507OC. Epub ahead of print. PMID: 39499775.
  12. Smyth T, Payton A, Hickman E, Rager JE, Jaspers I. Leveraging a comprehensive unbiased RNAseq database to characterize human monocyte-derived macrophage gene expression profiles within commonly employed in vitro polarization methods. Sci Rep. 2024 Nov 5;14(1):26753. doi: 10.1038/s41598-024-78000-6. PMID: 39500943; PMCID: PMC11538326.
  13. Vigeland CL, Link JD, Beggs HS, Alwarawrah Y, Ehrmann BM, Dang H, Doerschuk CM. Alveolar and Bone Marrow-derived Macrophages Differ in Metabolism and Glutamine Utilization. Am J Respir Cell Mol Biol. 2024 Nov 5. doi: 10.1165/rcmb.2023-0249OC. Epub ahead of print. PMID: 39499818.
  14. Gentzsch M, Esther CR Jr, Ribeiro CMP. Airway inflammation enhances the effectiveness of elexacaftor-tezacaftor-ivacaftor therapy for cystic fibrosis and CFTRN1303K mutation. Lancet Respir Med. 2024 Nov;12(11):e67. doi: 10.1016/S2213-2600(24)00305-9. PMID: 39395437.
  15. Goriounova AS, Flori Sassano M, Wrennall JA, Tarran R. ELD607 specifically traffics Orai1 to the lysosome leading to inhibition of store operated calcium entry. Cell Calcium. 2024 Nov;123:102945. doi: 10.1016/j.ceca.2024.102945. PMID: 39191091.
  16. Pickles RJ, Chen G, Randell SH. Enhanced susceptibility of pediatric airway epithelium to respiratory syncytial virus infection. J Clin Invest. 2024 Nov 1;134(21):e185689. doi: 10.1172/JCI185689. PMID: 39484717; PMCID: PMC11527439.
  17. Burnim M, Putcha N, LaFon D, Woo H, Azar A, Groenke L, Stampfli M, Schaub A, Fawzy A, Balasubramanian A, Fedarko N, Cooper CB, Bowler RP, Comellas A, Krishnan JA, Han MK, Couper D, Peters SP, Drummond MB, O’Neal W, Paine R, Criner G, Martinez FJ, Curtis JL, Barr G, Huang YJ, Woodruff P, Dransfield M, Hansel NN. Serum Immunoglobulin G Levels Are Associated with Risk for Exacerbations: An Analysis of SPIROMICS. Am J Respir Crit Care Med. 2024 Oct 23. doi: 10.1164/rccm.202311-2184OC. Epub ahead of print. PMID: 39441116.
  18. Muhlebach MS, Shields T, Shah KK, Ansar M, Virella-Lowell I, Zhou JJ, LiPuma JJ, Saiman L. Assessing effectiveness of cleaning and disinfection of equipment and environmental surfaces in cystic fibrosis clinics using an ATP assay. Infect Control Hosp Epidemiol. 2024 Oct 23:1-6. doi: 10.1017/ice.2024.102. Epub ahead of print. PMID: 39439036.
  19. McPeek MK, Gomez JC, Martin JR, Iannone MA, Dang H, Doerschuk CM. Leukocyte kinetics and bacterial clearance during S. pneumoniae pneumonia and contributions of ICAM-1. Am J Physiol Lung Cell Mol Physiol. 2024 Oct 22. doi: 10.1152/ajplung.00039.2024. Epub ahead of print. PMID: 39437756.
  20. O’Neil ST, Madlock-Brown C, Wilkins KJ, McGrath BM, Davis HE, Assaf GS, Wei H, Zareie P, French ET, Loomba J, McMurry JA, Zhou A, Chute CG, Moffitt RA, Pfaff ER, Yoo YJ, Leese P, Chew RF, Lieberman M, Haendel MA; N3C and RECOVER Consortia. Finding Long-COVID: temporal topic modeling of electronic health records from the N3C and RECOVER programs. NPJ Digit Med. 2024 Oct 21;7(1):296. doi: 10.1038/s41746-024-01286-3. PMID: 39433942; PMCID: PMC11494196.
  21. Konstantinidis I, Zou RH, Papageorgiou SN, Ronit A, Drummond MB, Kunisaki KM, Crothers K, Nouraie SM, Morris A. Effect of HIV on Lung Function and Structure: A Systematic Review and Meta-analysis. Ann Am Thorac Soc. 2024 Oct 17. doi: 10.1513/AnnalsATS.202404-384OC. Epub ahead of print. PMID: 39417747.
  22. Toro S, Anagnostopoulos AV, Bello SM, Blumberg K, Cameron R, Carmody L, Diehl AD, Dooley DM, Duncan WD, Fey P, Gaudet P, Harris NL, Joachimiak MP, Kiani L, Lubiana T, Munoz-Torres MC, O’Neil S, Osumi-Sutherland D, Puig-Barbe A, Reese JT, Reiser L, Robb SM, Ruemping T, Seager J, Sid E, Stefancsik R, Weber M, Wood V, Haendel MA, Mungall CJ. Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI). J Biomed Semantics. 2024 Oct 17;15(1):19. doi: 10.1186/s13326-024-00320-3. PMID: 39415214; PMCID: PMC11484368.
  23. Hernandez NP, Rawls A, Chen J, Zhang X, Wang Y, Gao X, Parisien M, Karaky M, Meloto CB, Montagna F, Dang H, Pan Y, Zhao Y, McLean S, Linnstaedt S, Diatchenko L, Nackley AG. miR-374 family is a key regulator of chronic primary pain onset. Pain Rep. 2024 Oct 16;9(6):e1199. doi: 10.1097/PR9.0000000000001199. PMID: 39430682; PMCID: PMC11487220.
  24. Powell MZ, Goralski JL, Ceppe AS, Donaldson SH, Sowa NA. Prevalence and predictors of substance use in adults with cystic fibrosis: A single-center retrospective review. Gen Hosp Psychiatry. 2024 Oct 16:S0163-8343(24)00214-7. doi: 10.1016/j.genhosppsych.2024.10.009. Epub ahead of print. PMID: 39490334.
  25. Danis D, Bamshad MJ, Bridges Y, Caballero-Oteyza A, Cacheiro P, Carmody LC, Chimirri L, Chong JX, Coleman B, Dalgleish R, Freeman PJ, Graefe ASL, Groza T, Hansen P, Jacobsen JOB, Klocperk A, Kusters M, Ladewig MS, Marcello AJ, Mattina T, Mungall CJ, Munoz-Torres MC, Reese JT, Rehburg F, Reis BCS, Schuetz C, Smedley D, Strauss T, Chandrabose Sundaramurthi J, Thun S, Wissink K, Wagstaff JF, Zocche D, Haendel MA, Robinson PN. A corpus of GA4GH phenopackets: case-level phenotyping for genomic diagnostics and discovery. HGG Adv. 2024 Oct 10:100371. doi: 10.1016/j.xhgg.2024.100371. Epub ahead of print. PMID: 39394689. PMCID: PMC11564936.
  26. Noah TL, Alexis NE, Bennett WD, Hernandez ML, Burbank AJ, Li H, Zhou H, Jaspers I, Peden DB. Effect of prednisone on woodsmoke-induced sputum inflammation in healthy volunteers: A randomized, placebo-controlled pilot study. J Allergy Clin Immunol Glob. 2024 Oct 10;4(1):100347. doi: 10.1016/j.jacig.2024.100347. PMID: 39524042; PMCID: PMC11546454.
  27. Muhlebach MS, She J, Zhang EY, Cogen JD, Kosorok MR. Changes in factors associated with inhaled antibiotic prescriptions for people with cystic fibrosis over time in the U.S. J Cyst Fibros. 2024 Oct 9:S1569-1993(24)01785-5. doi: 10.1016/j.jcf.2024.09.017. Epub ahead of print. PMID: 39389810.
  28. Ghosh A, Rogers KL Jr, Gallant SC, Kim YH, Rager JE, Gilmour MI, Randell SH, Jaspers I. Effects of simulated smoke condensate generated from combustion of selected military burn pit contents on human airway epithelial cells. Part Fibre Toxicol. 2024 Oct 8;21(1):41. doi: 10.1186/s12989-024-00604-7. PMID: 39380034; PMCID: PMC11460082.
  29. Koller BH, Jania LA, Li H, Barker WT, Melander RJ, Melander C. Adjuvants restore colistin sensitivity in mouse models of highly colistin-resistant isolates, limiting bacterial proliferation and dissemination. Antimicrob Agents Chemother. 2024 Oct 8;68(10):e0067124. doi: 10.1128/aac.00671-24. PMID: 39194205; PMCID: PMC11459950.
  30. Beaman MM, Yin W, Smith AJ, Sears PR, Leigh MW, Ferkol TW, Kearney B, Olivier KN, Kimple AJ, Clarke S, Huggins E, Nading E, Jung SH, Iyengar AK, Zou X, Dang H, Barrera A, Majoros WH, Rehder CW, Reddy TE, Ostrowski LE, Allen AS, Knowles MR, Zariwala MA, Crawford GE. Promoter Deletion Leading to Allele Specific Expression in a Genetically Unsolved Case of Primary Ciliary Dyskinesia. Am J Med Genet A. 2024 Oct 4:e63880. doi: 10.1002/ajmg.a.63880. Epub ahead of print. PMID: 39364610.
  31. Rogers K, Jaspers I. ToxPoint: Waste incineration management of plastic materials-an issue of increasing global public health importance. Toxicol Sci. 2024 Oct 4:kfae111. doi: 10.1093/toxsci/kfae111. Epub ahead of print. PMID: 39365924.
  32. Ling H, Raraigh KS, Pugh EW, Aksit MA, Zhang P, Pace RG, Faino AV, Bamshad MJ, Gibson RL, O’Neal W, Knowles MR, Blackman SM, Cutting GR; CF Genome Project. Genetic modifiers of body mass index in individuals with cystic fibrosis. Am J Hum Genet. 2024 Oct 3;111(10):2203-2218. doi: 10.1016/j.ajhg.2024.08.004. PMID: 39260370. PMCID: PMC11480786.

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